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Magnesium in PDB 7pvl: Crystal Structure of Mycobacterium Hassiacum Glucosyl-3- Phosphoglycerate Synthase at pH 8.5 - Apo Form

Enzymatic activity of Crystal Structure of Mycobacterium Hassiacum Glucosyl-3- Phosphoglycerate Synthase at pH 8.5 - Apo Form

All present enzymatic activity of Crystal Structure of Mycobacterium Hassiacum Glucosyl-3- Phosphoglycerate Synthase at pH 8.5 - Apo Form:
2.4.1.266;

Protein crystallography data

The structure of Crystal Structure of Mycobacterium Hassiacum Glucosyl-3- Phosphoglycerate Synthase at pH 8.5 - Apo Form, PDB code: 7pvl was solved by A.Silva, D.Nunes-Costa, P.J.Barbosa Pereira, S.Macedo-Ribeiro, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 48.15 / 1.43
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 71.03, 89.909, 95.634, 90, 90, 90
R / Rfree (%) 14.8 / 18.1

Other elements in 7pvl:

The structure of Crystal Structure of Mycobacterium Hassiacum Glucosyl-3- Phosphoglycerate Synthase at pH 8.5 - Apo Form also contains other interesting chemical elements:

Chlorine (Cl) 2 atoms

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Crystal Structure of Mycobacterium Hassiacum Glucosyl-3- Phosphoglycerate Synthase at pH 8.5 - Apo Form (pdb code 7pvl). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 3 binding sites of Magnesium where determined in the Crystal Structure of Mycobacterium Hassiacum Glucosyl-3- Phosphoglycerate Synthase at pH 8.5 - Apo Form, PDB code: 7pvl:
Jump to Magnesium binding site number: 1; 2; 3;

Magnesium binding site 1 out of 3 in 7pvl

Go back to Magnesium Binding Sites List in 7pvl
Magnesium binding site 1 out of 3 in the Crystal Structure of Mycobacterium Hassiacum Glucosyl-3- Phosphoglycerate Synthase at pH 8.5 - Apo Form


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of Mycobacterium Hassiacum Glucosyl-3- Phosphoglycerate Synthase at pH 8.5 - Apo Form within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg402

b:34.6
occ:0.57
 OE2 A:GLU51 2.0 26.8 1.0
O A:HOH569 2.1 31.6 1.0
O A:HOH850 2.1 39.6 1.0
O A:HOH591 2.3 32.7 1.0
O A:HOH712 2.3 45.4 1.0
O A:HOH562 2.4 33.8 1.0
CD A:GLU51 3.0 23.1 1.0
OE1 A:GLU51 3.3 23.3 1.0
O A:LEU49 4.0 16.3 1.0
O A:HOH572 4.1 20.7 1.0
O A:HOH871 4.2 52.2 1.0
CG A:GLU51 4.3 19.3 1.0
OD2 A:ASP133 4.6 23.4 1.0
O A:ASN50 4.6 17.2 1.0
CB A:ASP133 4.7 17.4 1.0

Magnesium binding site 2 out of 3 in 7pvl

Go back to Magnesium Binding Sites List in 7pvl
Magnesium binding site 2 out of 3 in the Crystal Structure of Mycobacterium Hassiacum Glucosyl-3- Phosphoglycerate Synthase at pH 8.5 - Apo Form


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Crystal Structure of Mycobacterium Hassiacum Glucosyl-3- Phosphoglycerate Synthase at pH 8.5 - Apo Form within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg403

b:35.5
occ:1.00
 O A:HOH575 2.1 28.1 1.0
O A:HOH846 2.1 46.1 1.0
O A:HOH531 2.2 31.8 1.0
O A:HOH857 2.2 29.9 1.0
O A:HOH858 2.2 40.7 1.0
O A:HOH510 3.8 37.7 1.0
O A:HOH574 3.9 19.3 1.0
O A:HOH705 4.2 35.7 1.0
OE1 A:GLU85 4.2 21.2 1.0
OE2 A:GLU85 4.2 20.6 1.0
O A:HOH865 4.3 40.3 1.0
O A:SER80 4.5 19.6 1.0
CD A:GLU85 4.6 18.6 1.0
CA A:GLY79 4.7 15.8 1.0
O A:HOH612 4.8 28.8 1.0
C A:GLY79 5.0 15.3 1.0

Magnesium binding site 3 out of 3 in 7pvl

Go back to Magnesium Binding Sites List in 7pvl
Magnesium binding site 3 out of 3 in the Crystal Structure of Mycobacterium Hassiacum Glucosyl-3- Phosphoglycerate Synthase at pH 8.5 - Apo Form


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of Crystal Structure of Mycobacterium Hassiacum Glucosyl-3- Phosphoglycerate Synthase at pH 8.5 - Apo Form within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg404

b:41.1
occ:1.00
 O A:HOH798 2.1 38.4 1.0
O A:HOH538 2.1 34.2 1.0
O A:GLY67 4.0 20.3 1.0
O A:HOH537 4.1 30.8 1.0
C A:GLY67 4.8 18.2 1.0

Reference:

A.Silva, D.Nunes-Costa, N.Empadinhas, P.J.Barbosa Pereira, S.Macedo-Ribeiro. Crystal Structure of Mycobacterium Hassiacum Glucosyl-3-Phosphoglycerate Synthase at pH 8.5 - Apo Form To Be Published.
Page generated: Thu Oct 3 04:47:59 2024

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