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Magnesium in PDB 7q21: III2-IV2 Respiratory Supercomplex From Corynebacterium Glutamicum

Enzymatic activity of III2-IV2 Respiratory Supercomplex From Corynebacterium Glutamicum

All present enzymatic activity of III2-IV2 Respiratory Supercomplex From Corynebacterium Glutamicum:
7.1.1.8; 7.1.1.9;

Other elements in 7q21:

The structure of III2-IV2 Respiratory Supercomplex From Corynebacterium Glutamicum also contains other interesting chemical elements:

Calcium (Ca) 2 atoms
Copper (Cu) 6 atoms
Iron (Fe) 16 atoms

Magnesium Binding Sites:

The binding sites of Magnesium atom in the III2-IV2 Respiratory Supercomplex From Corynebacterium Glutamicum (pdb code 7q21). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the III2-IV2 Respiratory Supercomplex From Corynebacterium Glutamicum, PDB code: 7q21:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in 7q21

Go back to Magnesium Binding Sites List in 7q21
Magnesium binding site 1 out of 2 in the III2-IV2 Respiratory Supercomplex From Corynebacterium Glutamicum


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of III2-IV2 Respiratory Supercomplex From Corynebacterium Glutamicum within 5.0Å range:
probe atom residue distance (Å) B Occ
G:Mg404

b:29.1
occ:1.00
OE1 G:GLU287 2.7 33.7 1.0
CD G:GLU287 3.6 32.9 1.0
OD1 D:ASP391 3.7 44.1 1.0
CB D:ASP391 3.9 40.9 1.0
CG D:ASP391 4.0 44.2 1.0
OE2 G:GLU287 4.1 33.8 1.0
OD2 G:ASP256 4.2 40.2 1.0
O G:ALA286 4.3 30.9 1.0
CE2 D:TYR155 4.3 40.8 1.0
OD1 G:ASP256 4.5 42.4 1.0
CG2 D:VAL318 4.5 38.3 1.0
OH D:TYR155 4.7 40.8 1.0
CG G:ASP256 4.8 41.0 1.0
CG G:GLU287 4.8 31.4 1.0
OD2 D:ASP391 4.9 46.4 1.0
CB G:GLU287 4.9 30.1 1.0
CZ D:TYR155 4.9 40.1 1.0
CA G:GLU287 5.0 29.2 1.0

Magnesium binding site 2 out of 2 in 7q21

Go back to Magnesium Binding Sites List in 7q21
Magnesium binding site 2 out of 2 in the III2-IV2 Respiratory Supercomplex From Corynebacterium Glutamicum


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of III2-IV2 Respiratory Supercomplex From Corynebacterium Glutamicum within 5.0Å range:
probe atom residue distance (Å) B Occ
d:Mg602

b:38.1
occ:1.00
OD1 d:ASP391 2.4 62.0 1.0
OE1 g:GLU287 2.6 40.6 1.0
CG d:ASP391 3.4 61.9 1.0
OD2 g:ASP256 3.4 53.9 1.0
CD g:GLU287 3.6 40.0 1.0
OD2 d:ASP391 3.7 62.5 1.0
CE2 d:TYR155 3.7 37.7 1.0
OH d:TYR155 4.0 37.8 1.0
CZ d:TYR155 4.3 37.5 1.0
CG g:ASP256 4.3 53.6 1.0
OD1 g:ASP256 4.3 53.3 1.0
OE2 g:GLU287 4.4 40.0 1.0
CG g:GLU287 4.5 38.8 1.0
OH g:TYR258 4.6 54.3 1.0
CD2 d:TYR155 4.7 37.0 1.0
CB d:ASP391 4.7 58.7 1.0
CG2 d:VAL318 4.8 48.0 1.0

Reference:

A.Moe, T.Kovalova, S.Krol, D.J.Yanofsky, M.Bott, D.Sjostrand, J.L.Rubinstein, M.Hogbom, P.Brzezinski. The Respiratory Supercomplex From C. Glutamicum. Structure V. 30 338 2022.
ISSN: ISSN 0969-2126
PubMed: 34910901
DOI: 10.1016/J.STR.2021.11.008
Page generated: Thu Oct 3 04:57:04 2024

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