Magnesium in PDB 7q7c: Room Temperature Structure of the Human Serine/Threonine Kinase 17B (STK17B/DRAK2) in Complex with Adp at Atmospheric Pressure

Enzymatic activity of Room Temperature Structure of the Human Serine/Threonine Kinase 17B (STK17B/DRAK2) in Complex with Adp at Atmospheric Pressure

All present enzymatic activity of Room Temperature Structure of the Human Serine/Threonine Kinase 17B (STK17B/DRAK2) in Complex with Adp at Atmospheric Pressure:
2.7.11.1;

Protein crystallography data

The structure of Room Temperature Structure of the Human Serine/Threonine Kinase 17B (STK17B/DRAK2) in Complex with Adp at Atmospheric Pressure, PDB code: 7q7c was solved by J.Lieske, S.Guenther, S.Saouane, A.Meents, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 47.98 / 2.85
Space group P 41 2 2
Cell size a, b, c (Å), α, β, γ (°) 84.44, 84.44, 116.61, 90, 90, 90
R / Rfree (%) 20.7 / 23.8

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Room Temperature Structure of the Human Serine/Threonine Kinase 17B (STK17B/DRAK2) in Complex with Adp at Atmospheric Pressure (pdb code 7q7c). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Room Temperature Structure of the Human Serine/Threonine Kinase 17B (STK17B/DRAK2) in Complex with Adp at Atmospheric Pressure, PDB code: 7q7c:

Magnesium binding site 1 out of 1 in 7q7c

Go back to Magnesium Binding Sites List in 7q7c
Magnesium binding site 1 out of 1 in the Room Temperature Structure of the Human Serine/Threonine Kinase 17B (STK17B/DRAK2) in Complex with Adp at Atmospheric Pressure


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Room Temperature Structure of the Human Serine/Threonine Kinase 17B (STK17B/DRAK2) in Complex with Adp at Atmospheric Pressure within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg401

b:81.0
occ:1.00
 O A:HOH505 2.2 76.5 1.0
O3B A:ADP402 2.3 81.9 1.0
O A:HOH502 2.5 78.8 1.0
OD1 A:ASN163 2.7 68.7 1.0
O1A A:ADP402 2.8 79.5 1.0
H5'1 A:ADP402 3.0 100.1 1.0
OD2 A:ASP179 3.1 74.5 1.0
HD21 A:ASN163 3.2 84.4 1.0
O A:HOH506 3.5 76.5 1.0
CG A:ASN163 3.5 68.3 1.0
PB A:ADP402 3.6 77.4 1.0
ND2 A:ASN163 3.7 70.4 1.0
HO3' A:ADP402 3.7 101.7 1.0
PA A:ADP402 3.9 76.5 1.0
C5' A:ADP402 4.0 83.4 1.0
O1B A:ADP402 4.0 82.2 1.0
HE2 A:LYS160 4.1 106.8 1.0
HB3 A:GLN162 4.1 93.6 1.0
O3A A:ADP402 4.1 76.5 1.0
O3' A:ADP402 4.1 84.8 1.0
CG A:ASP179 4.3 75.5 1.0
HB2 A:GLN162 4.4 93.6 1.0
H5'2 A:ADP402 4.4 100.1 1.0
HB2 A:ASP179 4.4 88.5 1.0
H3' A:ADP402 4.5 98.8 1.0
O5' A:ADP402 4.5 80.4 1.0
HD22 A:ASN163 4.5 84.4 1.0
HZ1 A:LYS160 4.6 109.4 1.0
C3' A:ADP402 4.7 82.3 1.0
CB A:GLN162 4.7 78.0 1.0
O2B A:ADP402 4.8 79.4 1.0
HA A:ASN163 4.8 79.5 1.0
C4' A:ADP402 4.8 81.7 1.0
HZ2 A:LYS160 4.8 109.4 1.0
CB A:ASP179 4.9 73.8 1.0
O A:GLN162 4.9 75.4 1.0
CE A:LYS160 4.9 89.0 1.0
CB A:ASN163 4.9 65.2 1.0
NZ A:LYS160 5.0 91.2 1.0

Reference:

J.Lieske, S.Saouane, S.Guenther, J.Meyer, T.Pakendorf, B.Reime, A.Burkhardt, E.Crosas, J.Hakanpaeae, K.Stachnik, J.Sieg, M.Rarey, M.H.Abdellatif, A.G.Gabdulkhakov, G.K.Selikhanov, H.N.Chapman, A.Meents. Room Temperature Structure of the Human Serine/Threonine Kinase 17B (STK17B/DRAK2) in Complex with Adp at Atmospheric Pressure To Be Published.
Page generated: Thu Apr 6 19:31:53 2023

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