Magnesium in PDB 7q7d: Room Temperature Structure of the Human Serine/Threonine Kinase 17B (STK17B/DRAK2) in Complex with Atp/Adp at 111 Mpa Helium Gas Pressure in A Sapphire Capillary

Enzymatic activity of Room Temperature Structure of the Human Serine/Threonine Kinase 17B (STK17B/DRAK2) in Complex with Atp/Adp at 111 Mpa Helium Gas Pressure in A Sapphire Capillary

All present enzymatic activity of Room Temperature Structure of the Human Serine/Threonine Kinase 17B (STK17B/DRAK2) in Complex with Atp/Adp at 111 Mpa Helium Gas Pressure in A Sapphire Capillary:
2.7.11.1;

Protein crystallography data

The structure of Room Temperature Structure of the Human Serine/Threonine Kinase 17B (STK17B/DRAK2) in Complex with Atp/Adp at 111 Mpa Helium Gas Pressure in A Sapphire Capillary, PDB code: 7q7d was solved by J.Lieske, S.Guenther, S.Saouane, A.Meents, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 39.46 / 2.60
Space group P 41 2 2
Cell size a, b, c (Å), α, β, γ (°) 83.89, 83.89, 116.26, 90, 90, 90
R / Rfree (%) 19.2 / 23.5

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Room Temperature Structure of the Human Serine/Threonine Kinase 17B (STK17B/DRAK2) in Complex with Atp/Adp at 111 Mpa Helium Gas Pressure in A Sapphire Capillary (pdb code 7q7d). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Room Temperature Structure of the Human Serine/Threonine Kinase 17B (STK17B/DRAK2) in Complex with Atp/Adp at 111 Mpa Helium Gas Pressure in A Sapphire Capillary, PDB code: 7q7d:

Magnesium binding site 1 out of 1 in 7q7d

Go back to Magnesium Binding Sites List in 7q7d
Magnesium binding site 1 out of 1 in the Room Temperature Structure of the Human Serine/Threonine Kinase 17B (STK17B/DRAK2) in Complex with Atp/Adp at 111 Mpa Helium Gas Pressure in A Sapphire Capillary


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Room Temperature Structure of the Human Serine/Threonine Kinase 17B (STK17B/DRAK2) in Complex with Atp/Adp at 111 Mpa Helium Gas Pressure in A Sapphire Capillary within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg402

b:65.9
occ:1.00
 O A:HOH510 2.0 65.8 1.0
O1B A:ATP401 2.2 65.5 0.6
O1B A:ATP401 2.2 65.5 0.4
OD2 A:ASP179 2.3 55.6 1.0
O A:HOH513 2.3 64.3 1.0
OD1 A:ASN163 2.4 54.5 1.0
O1A A:ATP401 2.5 58.8 0.4
O1A A:ATP401 2.5 58.9 0.6
HD21 A:ASN163 3.0 63.7 1.0
CG A:ASN163 3.3 53.7 1.0
CG A:ASP179 3.4 54.0 1.0
ND2 A:ASN163 3.5 53.0 1.0
PB A:ATP401 3.5 68.4 0.6
PB A:ATP401 3.6 68.8 0.4
HB2 A:ASP179 3.7 63.0 1.0
H5'2 A:ATP401 3.7 66.8 0.4
PA A:ATP401 3.8 55.3 0.4
H5'2 A:ATP401 3.8 66.9 0.6
PA A:ATP401 3.8 59.9 0.6
O3A A:ATP401 3.9 61.2 0.6
O3A A:ATP401 4.0 61.3 0.4
CB A:ASP179 4.0 52.5 1.0
HD2 A:LYS160 4.1 90.0 1.0
O2B A:ATP401 4.1 66.0 0.6
HB3 A:ASP179 4.2 63.0 1.0
HO3' A:ATP401 4.2 66.9 0.6
HZ1 A:LYS160 4.2 99.2 1.0
O A:HOH512 4.2 61.5 1.0
HO3' A:ATP401 4.2 67.0 0.4
HD22 A:ASN163 4.3 63.7 1.0
OD1 A:ASP179 4.4 54.1 1.0
O3B A:ATP401 4.5 69.2 0.4
H3' A:ATP401 4.5 66.8 0.4
OD2 A:ASP158 4.5 61.1 1.0
H3' A:ATP401 4.5 66.8 0.6
O2B A:ATP401 4.6 66.3 0.4
C5' A:ATP401 4.6 55.6 0.4
O5' A:ATP401 4.6 57.7 0.4
HZ2 A:LYS160 4.6 99.2 1.0
O3' A:ATP401 4.7 55.7 0.6
C5' A:ATP401 4.7 55.7 0.6
HA A:ASN163 4.7 63.0 1.0
O3' A:ATP401 4.7 55.8 0.4
CB A:ASN163 4.7 53.0 1.0
O3B A:ATP401 4.7 68.3 0.6
O2G A:ATP401 4.8 73.3 0.6
O5' A:ATP401 4.8 58.1 0.6
HB3 A:GLN162 4.8 63.0 1.0
HB2 A:GLN162 4.8 63.0 1.0
O2A A:ATP401 4.8 57.3 0.6
O2A A:ATP401 4.8 57.4 0.4
NZ A:LYS160 4.9 82.6 1.0

Reference:

J.Lieske, S.Saouane, S.Guenther, J.Meyer, T.Pakendorf, B.Reime, A.Burkhardt, E.Crosas, J.Hakanpaeae, K.Stachnik, J.Sieg, M.Rarey, M.H.Abdellatif, A.G.Gabdulkhakov, G.K.Selikhanov, H.N.Chapman, A.Meents. Fixed-Target High-Pressure Macromolecular Crystallography To Be Published.
Page generated: Thu Apr 6 19:31:53 2023

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