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Magnesium in PDB 7q7e: Room Temperature Structure of the Human Serine/Threonine Kinase 17B (STK17B/DRAK2) in Complex with Atp/Adp at Atmospheric Pressure in A Sapphire Capillary After High Helium Gas Pressure Release

Enzymatic activity of Room Temperature Structure of the Human Serine/Threonine Kinase 17B (STK17B/DRAK2) in Complex with Atp/Adp at Atmospheric Pressure in A Sapphire Capillary After High Helium Gas Pressure Release

All present enzymatic activity of Room Temperature Structure of the Human Serine/Threonine Kinase 17B (STK17B/DRAK2) in Complex with Atp/Adp at Atmospheric Pressure in A Sapphire Capillary After High Helium Gas Pressure Release:
2.7.11.1;

Protein crystallography data

The structure of Room Temperature Structure of the Human Serine/Threonine Kinase 17B (STK17B/DRAK2) in Complex with Atp/Adp at Atmospheric Pressure in A Sapphire Capillary After High Helium Gas Pressure Release, PDB code: 7q7e was solved by J.Lieske, S.Guenther, S.Saouane, A.Meents, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 48.12 / 2.85
Space group P 41 2 2
Cell size a, b, c (Å), α, β, γ (°) 84.24, 84.24, 117.26, 90, 90, 90
R / Rfree (%) 18.6 / 23.9

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Room Temperature Structure of the Human Serine/Threonine Kinase 17B (STK17B/DRAK2) in Complex with Atp/Adp at Atmospheric Pressure in A Sapphire Capillary After High Helium Gas Pressure Release (pdb code 7q7e). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Room Temperature Structure of the Human Serine/Threonine Kinase 17B (STK17B/DRAK2) in Complex with Atp/Adp at Atmospheric Pressure in A Sapphire Capillary After High Helium Gas Pressure Release, PDB code: 7q7e:

Magnesium binding site 1 out of 1 in 7q7e

Go back to Magnesium Binding Sites List in 7q7e
Magnesium binding site 1 out of 1 in the Room Temperature Structure of the Human Serine/Threonine Kinase 17B (STK17B/DRAK2) in Complex with Atp/Adp at Atmospheric Pressure in A Sapphire Capillary After High Helium Gas Pressure Release


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Room Temperature Structure of the Human Serine/Threonine Kinase 17B (STK17B/DRAK2) in Complex with Atp/Adp at Atmospheric Pressure in A Sapphire Capillary After High Helium Gas Pressure Release within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg402

b:57.4
occ:1.00
OD1 A:ASN163 2.1 52.8 1.0
O1B A:ATP401 2.4 61.6 0.3
OD2 A:ASP179 2.4 56.7 1.0
O1A A:ATP401 2.5 61.2 0.7
O1B A:ATP401 2.5 62.6 0.7
O A:HOH510 2.5 60.6 1.0
O1A A:ATP401 2.6 61.0 0.3
O A:HOH502 2.9 59.3 1.0
O A:HOH509 3.1 58.2 1.0
CG A:ASN163 3.1 51.7 1.0
HD21 A:ASN163 3.1 62.9 1.0
H5'2 A:ATP401 3.3 73.7 0.3
H5'2 A:ATP401 3.4 74.7 0.7
CG A:ASP179 3.5 56.5 1.0
ND2 A:ASN163 3.5 52.4 1.0
HB2 A:ASP179 3.6 65.4 1.0
PB A:ATP401 3.6 61.5 0.3
H3' A:ATP401 3.7 73.5 0.3
PA A:ATP401 3.7 60.2 0.7
PA A:ATP401 3.7 60.1 0.3
PB A:ATP401 3.7 61.7 0.7
H3' A:ATP401 3.8 73.7 0.7
O3A A:ATP401 3.8 60.1 0.3
HE3 A:LYS160 3.9 84.6 1.0
O3A A:ATP401 3.9 59.3 0.7
CB A:ASP179 4.0 54.5 1.0
HB3 A:ASP179 4.1 65.4 1.0
O3' A:ATP401 4.2 64.0 0.7
C5' A:ATP401 4.2 61.4 0.3
O3' A:ATP401 4.2 62.5 0.3
HO3' A:ATP401 4.2 76.8 0.7
C5' A:ATP401 4.2 62.3 0.7
HO3' A:ATP401 4.3 75.0 0.3
C3' A:ATP401 4.3 61.3 0.3
HD22 A:ASN163 4.4 62.9 1.0
C3' A:ATP401 4.4 61.4 0.7
O2B A:ATP401 4.4 60.4 0.3
HA A:ASN163 4.4 59.4 1.0
O2B A:ATP401 4.5 59.9 0.7
CB A:ASN163 4.5 49.9 1.0
HB3 A:GLN162 4.5 70.0 1.0
O5' A:ATP401 4.5 59.8 0.3
O5' A:ATP401 4.5 58.8 0.7
OD1 A:ASP179 4.6 58.3 1.0
HB2 A:GLN162 4.7 70.0 1.0
OD2 A:ASP158 4.7 56.6 1.0
H5'1 A:ATP401 4.8 73.7 0.3
HB3 A:ASN163 4.8 59.9 1.0
O3B A:ATP401 4.8 62.9 0.3
CE A:LYS160 4.8 70.5 1.0
O2A A:ATP401 4.8 59.3 0.7
C4' A:ATP401 4.9 61.4 0.3
CA A:ASN163 4.9 49.5 1.0
H5'1 A:ATP401 4.9 74.7 0.7
O2A A:ATP401 4.9 59.9 0.3
O A:GLN162 4.9 55.7 1.0
C4' A:ATP401 4.9 61.8 0.7
O3B A:ATP401 4.9 63.6 0.7
HZ1 A:LYS160 5.0 88.2 1.0
HE2 A:LYS160 5.0 84.6 1.0
O2G A:ATP401 5.0 62.5 0.7

Reference:

J.Lieske, S.Saouane, S.Guenther, J.Meyer, T.Pakendorf, B.Reime, A.Burkhardt, E.Crosas, J.Hakanpaeae, K.Stachnik, J.Sieg, M.Rarey, M.H.Abdellatif, A.G.Gabdulkhakov, G.K.Selikhanov, H.N.Chapman, A.Meents. Fixed-Target High-Pressure Macromolecular Crystallography To Be Published.
Page generated: Thu Oct 3 04:59:12 2024

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