Magnesium in PDB 7qc0: Crystal Structure of Cadmium Translocating P-Type Atpase

The structure of Crystal Structure of Cadmium Translocating P-Type Atpase, PDB code: 7qc0 was solved by C.Groenberg, Q.Hu, K.Wang, P.Gourdon, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	47.27 / 3.11
Space group	P 21 21 2
Cell size a, b, c (Å), α, β, γ (°)	89.028, 94.532, 128.774, 90, 90, 90
R / Rfree (%)	24.5 / 26.8

The structure of Crystal Structure of Cadmium Translocating P-Type Atpase also contains other interesting chemical elements:

Fluorine

(F)

3 atoms

The binding sites of Magnesium atom in the Crystal Structure of Cadmium Translocating P-Type Atpase (pdb code 7qc0). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Crystal Structure of Cadmium Translocating P-Type Atpase, PDB code: 7qc0:

Magnesium binding site 1 out of 1 in the Crystal Structure of Cadmium Translocating P-Type Atpase


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of Cadmium Translocating P-Type Atpase within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg702 b:83.2 occ:1.00 F3 A:BEF701 1.9 88.0 1.0 O A:HOH805 2.0 87.0 1.0 OD2 A:ASP369 2.1 92.1 1.0 OD1 A:ASP571 2.1 92.4 1.0 O A:THR371 2.5 90.3 1.0 CG A:ASP369 3.1 92.8 1.0 BE A:BEF701 3.1 86.3 1.0 CG A:ASP571 3.1 94.1 1.0 OD2 A:ASP571 3.4 102.0 1.0 OD1 A:ASP369 3.4 93.4 1.0 C A:THR371 3.6 85.7 1.0 OD2 A:ASP575 3.7 97.8 1.0 F2 A:BEF701 4.0 80.1 1.0 CB A:THR371 4.1 85.7 1.0 F1 A:BEF701 4.1 83.1 1.0 CA A:THR371 4.2 80.6 1.0 N A:THR371 4.2 86.7 1.0 O A:GLY207 4.2 91.5 1.0 N A:GLY572 4.3 78.4 1.0 OD1 A:ASN574 4.4 88.7 1.0 CB A:ASP369 4.4 92.7 1.0 CB A:ASP571 4.5 90.4 1.0 CA A:GLY207 4.5 78.5 1.0 N A:ASP571 4.6 90.5 1.0 CG2 A:THR371 4.6 85.2 1.0 CA A:GLY572 4.6 93.8 1.0 C A:ASP571 4.7 90.4 1.0 CG A:ASP575 4.7 91.5 1.0 N A:GLY372 4.7 83.3 1.0 CA A:ASP571 4.8 90.1 1.0 OG1 A:THR373 4.8 85.6 1.0 C A:GLY207 4.9 80.2 1.0 OD1 A:ASP575 5.0 88.9 1.0

C.Gronberg, Q.Hu, D.R.Mahato, E.Longhin, N.Salustros, A.Duelli, P.Lyu, V.Bagenholm, J.Eriksson, K.U.Rao, D.I.Henderson, G.Meloni, M.Andersson, T.Croll, G.Godaly, K.Wang, P.Gourdon. Structure and Ion-Release Mechanism of P Ib-4 -Type Atpases. Elife V. 10 2021.
ISSN: ESSN 2050-084X
PubMed: 34951590
DOI: 10.7554/ELIFE.73124