Magnesium in PDB 7qdx: Bacterial Impdh Chimera
Enzymatic activity of Bacterial Impdh Chimera
All present enzymatic activity of Bacterial Impdh Chimera:
1.1.1.205;
Protein crystallography data
The structure of Bacterial Impdh Chimera, PDB code: 7qdx
was solved by
G.Labesse,
M.Gelin,
H.Munier-Lehmann,
A.Gedeon,
A.Haouz,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
Resolution Low / High (Å)
|
47.05 /
2.90
|
Space group
|
I 4
|
Cell size a, b, c (Å), α, β, γ (°)
|
109.27,
109.27,
176.26,
90,
90,
90
|
R / Rfree (%)
|
20.1 /
26.7
|
Magnesium Binding Sites:
The binding sites of Magnesium atom in the Bacterial Impdh Chimera
(pdb code 7qdx). This binding sites where shown within
5.0 Angstroms radius around Magnesium atom.
In total 4 binding sites of Magnesium where determined in the
Bacterial Impdh Chimera, PDB code: 7qdx:
Jump to Magnesium binding site number:
1;
2;
3;
4;
Magnesium binding site 1 out
of 4 in 7qdx
Go back to
Magnesium Binding Sites List in 7qdx
Magnesium binding site 1 out
of 4 in the Bacterial Impdh Chimera
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 1 of Bacterial Impdh Chimera within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Mg601
b:63.3
occ:1.00
|
O1B
|
A:ATP603
|
1.5
|
80.6
|
1.0
|
O1B
|
A:ATP604
|
2.1
|
69.8
|
1.0
|
O3G
|
A:ATP604
|
2.5
|
66.8
|
1.0
|
O1G
|
A:ATP603
|
2.7
|
75.5
|
1.0
|
O3G
|
A:ATP603
|
2.8
|
77.3
|
1.0
|
PB
|
A:ATP603
|
2.9
|
81.4
|
1.0
|
O1G
|
A:ATP604
|
3.0
|
66.8
|
1.0
|
PG
|
A:ATP603
|
3.0
|
80.9
|
1.0
|
OE1
|
A:GLU200
|
3.0
|
71.1
|
1.0
|
PG
|
A:ATP604
|
3.1
|
67.6
|
1.0
|
PB
|
A:ATP604
|
3.3
|
66.1
|
1.0
|
O3B
|
A:ATP604
|
3.4
|
67.4
|
1.0
|
O2B
|
A:ATP603
|
3.4
|
76.7
|
1.0
|
O3B
|
A:ATP603
|
3.4
|
79.4
|
1.0
|
MG
|
A:MG602
|
4.0
|
65.9
|
1.0
|
CD
|
A:GLU200
|
4.0
|
73.3
|
1.0
|
O3A
|
A:ATP603
|
4.3
|
80.7
|
1.0
|
O3A
|
A:ATP604
|
4.3
|
68.4
|
1.0
|
O2B
|
A:ATP604
|
4.4
|
62.9
|
1.0
|
NZ
|
A:LYS201
|
4.4
|
75.2
|
1.0
|
O2G
|
A:ATP603
|
4.5
|
78.1
|
1.0
|
O2G
|
A:ATP604
|
4.6
|
67.4
|
1.0
|
CG
|
A:GLU200
|
4.7
|
73.0
|
1.0
|
O2A
|
A:ATP603
|
4.8
|
84.6
|
1.0
|
OE2
|
A:GLU200
|
4.9
|
76.8
|
1.0
|
O1A
|
A:ATP603
|
4.9
|
79.9
|
1.0
|
PA
|
A:ATP603
|
5.0
|
85.3
|
1.0
|
|
Magnesium binding site 2 out
of 4 in 7qdx
Go back to
Magnesium Binding Sites List in 7qdx
Magnesium binding site 2 out
of 4 in the Bacterial Impdh Chimera
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 2 of Bacterial Impdh Chimera within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Mg602
b:65.9
occ:1.00
|
O1G
|
A:ATP603
|
1.8
|
75.5
|
1.0
|
O1G
|
B:ATP603
|
2.2
|
68.4
|
1.0
|
O1G
|
A:ATP604
|
2.5
|
66.8
|
1.0
|
O
|
B:HOH707
|
2.7
|
67.4
|
1.0
|
OE2
|
A:GLU200
|
2.9
|
76.8
|
1.0
|
PG
|
A:ATP603
|
2.9
|
80.9
|
1.0
|
O2G
|
A:ATP603
|
3.2
|
78.1
|
1.0
|
OE1
|
A:GLU200
|
3.2
|
71.1
|
1.0
|
PG
|
B:ATP603
|
3.3
|
61.4
|
1.0
|
CD
|
A:GLU200
|
3.4
|
73.3
|
1.0
|
O3G
|
A:ATP603
|
3.6
|
77.3
|
1.0
|
O3G
|
B:ATP603
|
3.6
|
64.4
|
1.0
|
O2G
|
B:ATP603
|
3.8
|
60.5
|
1.0
|
PG
|
A:ATP604
|
3.9
|
67.6
|
1.0
|
MG
|
A:MG601
|
4.0
|
63.3
|
1.0
|
O3B
|
A:ATP603
|
4.4
|
79.4
|
1.0
|
O3G
|
A:ATP604
|
4.5
|
66.8
|
1.0
|
MG
|
B:MG602
|
4.6
|
61.4
|
1.0
|
O3B
|
B:ATP603
|
4.6
|
65.0
|
1.0
|
CG
|
A:GLU200
|
4.7
|
73.0
|
1.0
|
O1B
|
A:ATP603
|
4.8
|
80.6
|
1.0
|
O2G
|
A:ATP604
|
4.8
|
67.4
|
1.0
|
NH2
|
B:ARG156
|
4.9
|
65.3
|
1.0
|
O3B
|
A:ATP604
|
4.9
|
67.4
|
1.0
|
|
Magnesium binding site 3 out
of 4 in 7qdx
Go back to
Magnesium Binding Sites List in 7qdx
Magnesium binding site 3 out
of 4 in the Bacterial Impdh Chimera
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 3 of Bacterial Impdh Chimera within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Mg601
b:55.6
occ:1.00
|
O1G
|
B:ATP604
|
2.1
|
69.5
|
0.9
|
O2B
|
B:ATP604
|
2.2
|
64.3
|
0.9
|
O2G
|
B:ATP603
|
2.5
|
60.5
|
1.0
|
O3G
|
B:ATP603
|
2.6
|
64.4
|
1.0
|
O1B
|
B:ATP603
|
2.7
|
62.3
|
1.0
|
OE1
|
B:GLU200
|
2.8
|
63.4
|
1.0
|
PG
|
B:ATP603
|
2.9
|
61.4
|
1.0
|
PG
|
B:ATP604
|
3.2
|
76.3
|
0.9
|
O3B
|
B:ATP603
|
3.2
|
65.0
|
1.0
|
PB
|
B:ATP604
|
3.4
|
67.8
|
0.9
|
PB
|
B:ATP603
|
3.5
|
65.8
|
1.0
|
O3B
|
B:ATP604
|
3.5
|
69.8
|
0.9
|
MG
|
B:MG602
|
3.5
|
61.4
|
1.0
|
CD
|
B:GLU200
|
3.7
|
61.7
|
1.0
|
O3G
|
B:ATP604
|
3.8
|
68.6
|
0.9
|
OE2
|
B:GLU200
|
3.8
|
63.5
|
1.0
|
O
|
B:HOH707
|
3.9
|
67.4
|
1.0
|
O3A
|
B:ATP604
|
4.3
|
71.9
|
0.9
|
O1G
|
B:ATP603
|
4.4
|
68.4
|
1.0
|
NZ
|
B:LYS201
|
4.4
|
61.1
|
1.0
|
O1B
|
B:ATP604
|
4.5
|
70.1
|
0.9
|
O2G
|
B:ATP604
|
4.5
|
69.5
|
0.9
|
O3A
|
B:ATP603
|
4.6
|
59.1
|
1.0
|
O2B
|
B:ATP603
|
4.6
|
63.6
|
1.0
|
|
Magnesium binding site 4 out
of 4 in 7qdx
Go back to
Magnesium Binding Sites List in 7qdx
Magnesium binding site 4 out
of 4 in the Bacterial Impdh Chimera
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 4 of Bacterial Impdh Chimera within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Mg602
b:61.4
occ:1.00
|
O3G
|
B:ATP603
|
2.1
|
64.4
|
1.0
|
O1G
|
B:ATP604
|
2.1
|
69.5
|
0.9
|
O2G
|
A:ATP604
|
2.4
|
67.4
|
1.0
|
OE2
|
B:GLU200
|
2.6
|
63.5
|
1.0
|
O
|
B:HOH707
|
3.0
|
67.4
|
1.0
|
PG
|
B:ATP604
|
3.1
|
76.3
|
0.9
|
PG
|
A:ATP604
|
3.2
|
67.6
|
1.0
|
O2G
|
B:ATP604
|
3.3
|
69.5
|
0.9
|
O1G
|
A:ATP604
|
3.5
|
66.8
|
1.0
|
MG
|
B:MG601
|
3.5
|
55.6
|
1.0
|
PG
|
B:ATP603
|
3.6
|
61.4
|
1.0
|
CD
|
B:GLU200
|
3.6
|
61.7
|
1.0
|
O3G
|
A:ATP604
|
3.6
|
66.8
|
1.0
|
OE1
|
B:GLU200
|
3.9
|
63.4
|
1.0
|
O3G
|
B:ATP604
|
4.0
|
68.6
|
0.9
|
O2G
|
B:ATP603
|
4.3
|
60.5
|
1.0
|
O1G
|
B:ATP603
|
4.3
|
68.4
|
1.0
|
NH2
|
A:ARG156
|
4.4
|
63.5
|
1.0
|
O3B
|
B:ATP604
|
4.5
|
69.8
|
0.9
|
O3B
|
B:ATP603
|
4.5
|
65.0
|
1.0
|
MG
|
A:MG602
|
4.6
|
65.9
|
1.0
|
O3B
|
A:ATP604
|
4.6
|
67.4
|
1.0
|
CG
|
B:GLU200
|
4.9
|
58.7
|
1.0
|
|
Reference:
A.Gedeon,
G.Labesse,
M.Gelin,
H.Munier-Lehmann,
A.Gedeon,
A.Haouz.
N/A N/A.
Page generated: Thu Oct 3 05:05:19 2024
|