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Magnesium in PDB 7qtm: Transition State Analogue of Small G Protein in Complex with Relevant Gap

Enzymatic activity of Transition State Analogue of Small G Protein in Complex with Relevant Gap

All present enzymatic activity of Transition State Analogue of Small G Protein in Complex with Relevant Gap:
3.6.5.2;

Protein crystallography data

The structure of Transition State Analogue of Small G Protein in Complex with Relevant Gap, PDB code: 7qtm was solved by P.Baumann, Y.Jin, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 55.31 / 2.25
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 73.632, 66.604, 76.463, 90, 95.02, 90
R / Rfree (%) 22 / 30.4

Other elements in 7qtm:

The structure of Transition State Analogue of Small G Protein in Complex with Relevant Gap also contains other interesting chemical elements:

Fluorine (F) 10 atoms

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Transition State Analogue of Small G Protein in Complex with Relevant Gap (pdb code 7qtm). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 4 binding sites of Magnesium where determined in the Transition State Analogue of Small G Protein in Complex with Relevant Gap, PDB code: 7qtm:
Jump to Magnesium binding site number: 1; 2; 3; 4;

Magnesium binding site 1 out of 4 in 7qtm

Go back to Magnesium Binding Sites List in 7qtm
Magnesium binding site 1 out of 4 in the Transition State Analogue of Small G Protein in Complex with Relevant Gap


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Transition State Analogue of Small G Protein in Complex with Relevant Gap within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mg202

b:25.8
occ:1.00
 MG B:MGF202 0.0 25.8 1.0
F3 B:MGF202 1.8 22.1 1.0
F1 B:MGF202 1.8 27.3 1.0
F2 B:MGF202 1.8 23.1 1.0
O B:HOH305 1.9 27.1 1.0
O3B B:GDP201 2.2 32.9 1.0
PB B:GDP201 3.4 33.1 1.0
MG B:MG203 3.6 32.1 1.0
F1 B:F2Y34 3.7 36.4 1.0
O2B B:GDP201 3.7 26.6 1.0
NE2 B:GLN63 3.8 30.9 1.0
OE1 B:GLN63 3.8 28.8 1.0
N B:THR37 4.0 28.8 1.0
N B:ALA15 4.0 31.4 1.0
O B:HOH309 4.1 25.2 1.0
NZ B:LYS18 4.1 35.8 1.0
OH B:F2Y34 4.2 39.7 1.0
CA B:PRO36 4.2 31.7 1.0
N B:GLY62 4.3 29.8 1.0
CD B:GLN63 4.3 29.6 1.0
O1B B:GDP201 4.3 34.7 1.0
CA B:GLY14 4.4 31.2 1.0
O B:HOH301 4.4 22.6 1.0
O B:THR37 4.5 31.3 1.0
CB B:PRO36 4.5 31.1 1.0
CE B:LYS18 4.6 39.1 1.0
C B:PRO36 4.6 29.3 1.0
CB B:THR37 4.6 28.4 1.0
O3A B:GDP201 4.7 33.8 1.0
C B:GLY14 4.7 32.2 1.0
CE1 B:F2Y34 4.8 39.7 1.0
CA B:THR37 4.8 28.7 1.0
OG1 B:THR37 4.9 28.7 1.0
CA B:ALA61 4.9 29.9 1.0
CZ B:F2Y34 5.0 41.8 1.0
CA B:GLY62 5.0 32.4 1.0
CA B:ALA15 5.0 32.7 1.0

Magnesium binding site 2 out of 4 in 7qtm

Go back to Magnesium Binding Sites List in 7qtm
Magnesium binding site 2 out of 4 in the Transition State Analogue of Small G Protein in Complex with Relevant Gap


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Transition State Analogue of Small G Protein in Complex with Relevant Gap within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mg203

b:32.1
occ:1.00
 F1 B:MGF202 1.9 27.3 1.0
OG1 B:THR19 2.0 35.2 1.0
O2B B:GDP201 2.1 26.6 1.0
O B:HOH309 2.2 25.2 1.0
O B:HOH301 2.2 22.6 1.0
OG1 B:THR37 2.3 28.7 1.0
CB B:THR37 3.0 28.4 1.0
CB B:THR19 3.1 33.6 1.0
PB B:GDP201 3.3 33.1 1.0
MG B:MGF202 3.6 25.8 1.0
O3B B:GDP201 3.7 32.9 1.0
OD2 B:ASP59 3.8 32.9 1.0
N B:THR37 3.8 28.8 1.0
O2A B:GDP201 3.9 34.9 1.0
N B:THR19 4.0 34.0 1.0
CA B:THR37 4.1 28.7 1.0
CA B:THR19 4.1 36.8 1.0
CG2 B:THR37 4.1 27.0 1.0
OD1 B:ASP59 4.1 28.8 1.0
CG2 B:THR19 4.2 34.5 1.0
CG B:ASP59 4.3 30.6 1.0
O1B B:GDP201 4.3 34.7 1.0
O B:HOH304 4.3 20.0 1.0
F1 B:F2Y34 4.3 36.4 1.0
O3A B:GDP201 4.5 33.8 1.0
PA B:GDP201 4.6 32.4 1.0
F2 B:MGF202 4.6 23.1 1.0
O B:HOH305 4.7 27.1 1.0
O B:VAL35 4.7 34.0 1.0
O B:THR60 4.7 24.0 1.0
O1A B:GDP201 4.8 30.7 1.0
F3 B:MGF202 4.9 22.1 1.0
CE B:LYS18 4.9 39.1 1.0
C B:PRO36 4.9 29.3 1.0
O B:HOH303 5.0 26.2 1.0
CB B:LYS18 5.0 38.9 1.0

Magnesium binding site 3 out of 4 in 7qtm

Go back to Magnesium Binding Sites List in 7qtm
Magnesium binding site 3 out of 4 in the Transition State Analogue of Small G Protein in Complex with Relevant Gap


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of Transition State Analogue of Small G Protein in Complex with Relevant Gap within 5.0Å range:
probe atom residue distance (Å) B Occ
I:Mg202

b:26.1
occ:1.00
 MG I:MGF202 0.0 26.1 1.0
F1 I:MGF202 1.9 29.5 1.0
F2 I:MGF202 1.9 21.0 1.0
F3 I:MGF202 1.9 22.9 1.0
O I:HOH320 2.0 33.2 1.0
O3B I:GDP201 2.3 26.8 1.0
MG I:MG203 3.4 30.6 1.0
F1 I:F2Y34 3.5 45.4 1.0
PB I:GDP201 3.5 25.5 1.0
NE2 I:GLN63 3.6 33.3 1.0
O I:HOH309 3.7 27.4 1.0
O1B I:GDP201 3.7 23.3 1.0
NZ I:LYS18 3.9 30.1 1.0
N I:THR37 4.0 32.1 1.0
N I:GLY62 4.0 26.3 1.0
OE1 I:GLN63 4.1 35.4 1.0
OH I:F2Y34 4.2 44.7 1.0
O I:HOH302 4.2 19.0 1.0
N I:ALA15 4.2 30.4 1.0
CD I:GLN63 4.2 31.0 1.0
CA I:PRO36 4.3 31.0 1.0
O2B I:GDP201 4.4 29.1 1.0
O I:THR37 4.4 28.7 1.0
CA I:GLY14 4.4 28.5 1.0
CE I:LYS18 4.6 33.0 1.0
CB I:PRO36 4.6 30.6 1.0
C I:PRO36 4.6 31.0 1.0
CE1 I:F2Y34 4.6 43.7 1.0
CB I:THR37 4.7 35.1 1.0
CA I:GLY62 4.8 28.5 1.0
CA I:ALA61 4.8 26.8 1.0
CA I:THR37 4.8 31.4 1.0
OG1 I:THR37 4.8 34.0 1.0
O3A I:GDP201 4.8 28.1 1.0
C I:GLY14 4.9 28.9 1.0
O I:THR60 4.9 26.2 1.0
CZ I:F2Y34 4.9 44.6 1.0
C I:ALA61 4.9 26.0 1.0

Magnesium binding site 4 out of 4 in 7qtm

Go back to Magnesium Binding Sites List in 7qtm
Magnesium binding site 4 out of 4 in the Transition State Analogue of Small G Protein in Complex with Relevant Gap


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 4 of Transition State Analogue of Small G Protein in Complex with Relevant Gap within 5.0Å range:
probe atom residue distance (Å) B Occ
I:Mg203

b:30.6
occ:1.00
 F1 I:MGF202 1.8 29.5 1.0
O I:HOH309 2.0 27.4 1.0
O1B I:GDP201 2.1 23.3 1.0
OG1 I:THR19 2.1 35.1 1.0
O I:HOH302 2.2 19.0 1.0
OG1 I:THR37 2.4 34.0 1.0
CB I:THR37 3.1 35.1 1.0
CB I:THR19 3.2 34.7 1.0
PB I:GDP201 3.3 25.5 1.0
MG I:MGF202 3.4 26.1 1.0
O3B I:GDP201 3.6 26.8 1.0
O2A I:GDP201 3.8 27.5 1.0
N I:THR37 3.8 32.1 1.0
OD1 I:ASP59 3.8 29.4 1.0
N I:THR19 4.0 35.0 1.0
OD2 I:ASP59 4.0 31.3 1.0
CA I:THR37 4.1 31.4 1.0
F1 I:F2Y34 4.1 45.4 1.0
CA I:THR19 4.1 37.1 1.0
CG2 I:THR37 4.1 34.9 1.0
CG2 I:THR19 4.2 34.2 1.0
CG I:ASP59 4.3 30.2 1.0
O2B I:GDP201 4.3 29.1 1.0
O I:HOH320 4.4 33.2 1.0
F2 I:MGF202 4.4 21.0 1.0
O I:HOH303 4.5 29.5 1.0
O3A I:GDP201 4.5 28.1 1.0
O I:THR60 4.5 26.2 1.0
PA I:GDP201 4.6 26.0 1.0
F3 I:MGF202 4.7 22.9 1.0
NZ I:LYS18 4.8 30.1 1.0
CB I:LYS18 4.8 34.3 1.0
O I:VAL35 4.9 32.7 1.0
CE I:LYS18 4.9 33.0 1.0
C I:PRO36 4.9 31.0 1.0
O1A I:GDP201 5.0 26.3 1.0

Reference:

P.Baumann, Y.Jin. Transition State Analogue of Small G Protein in Complex with Relevant Gap To Be Published.
Page generated: Thu Oct 3 07:01:18 2024

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