Magnesium in PDB 7qvi: Fiber-Forming Rubisco Derived From Ancestral Sequence Reconstruction and Rational Engineering
Magnesium Binding Sites:
Pages:
>>> Page 1 <<<
Page 2, Binding sites: 11 -
16;
Binding sites:
The binding sites of Magnesium atom in the Fiber-Forming Rubisco Derived From Ancestral Sequence Reconstruction and Rational Engineering
(pdb code 7qvi). This binding sites where shown within
5.0 Angstroms radius around Magnesium atom.
In total 16 binding sites of Magnesium where determined in the
Fiber-Forming Rubisco Derived From Ancestral Sequence Reconstruction and Rational Engineering, PDB code: 7qvi:
Jump to Magnesium binding site number:
1;
2;
3;
4;
5;
6;
7;
8;
9;
10;
Magnesium binding site 1 out
of 16 in 7qvi
Go back to
Magnesium Binding Sites List in 7qvi
Magnesium binding site 1 out
of 16 in the Fiber-Forming Rubisco Derived From Ancestral Sequence Reconstruction and Rational Engineering
 Mono view
 Stereo pair view
|
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 1 of Fiber-Forming Rubisco Derived From Ancestral Sequence Reconstruction and Rational Engineering within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Mg502
b:71.7
occ:1.00
|
O6
|
A:CAP501
|
2.0
|
73.5
|
1.0
|
|
O2
|
A:CAP501
|
2.1
|
73.5
|
1.0
|
|
OQ1
|
A:KCX187
|
2.1
|
71.7
|
1.0
|
|
O3
|
A:CAP501
|
2.2
|
73.5
|
1.0
|
|
OE1
|
A:GLU190
|
2.4
|
73.3
|
1.0
|
|
OD1
|
A:ASP189
|
2.5
|
71.9
|
1.0
|
|
C2
|
A:CAP501
|
2.6
|
73.5
|
1.0
|
|
C
|
A:CAP501
|
2.7
|
73.5
|
1.0
|
|
C3
|
A:CAP501
|
2.9
|
73.5
|
1.0
|
|
CX
|
A:KCX187
|
3.2
|
71.7
|
1.0
|
|
CG
|
A:ASP189
|
3.4
|
71.9
|
1.0
|
|
CD
|
A:GLU190
|
3.6
|
73.3
|
1.0
|
|
OQ2
|
A:KCX187
|
3.6
|
71.7
|
1.0
|
|
ND2
|
B:ASN109
|
3.7
|
74.8
|
1.0
|
|
C4
|
A:CAP501
|
3.8
|
73.5
|
1.0
|
|
NE2
|
A:HIS280
|
3.8
|
71.0
|
1.0
|
|
OD2
|
A:ASP189
|
3.9
|
71.9
|
1.0
|
|
O7
|
A:CAP501
|
4.0
|
73.5
|
1.0
|
|
CG2
|
A:THR159
|
4.0
|
67.7
|
1.0
|
|
N
|
A:GLU190
|
4.1
|
73.3
|
1.0
|
|
C1
|
A:CAP501
|
4.1
|
73.5
|
1.0
|
|
OG1
|
A:THR159
|
4.2
|
67.7
|
1.0
|
|
OE2
|
A:GLU190
|
4.2
|
73.3
|
1.0
|
|
NZ
|
A:KCX187
|
4.3
|
71.7
|
1.0
|
|
NZ
|
A:LYS161
|
4.4
|
69.6
|
1.0
|
|
CB
|
A:ASP189
|
4.5
|
71.9
|
1.0
|
|
O1
|
A:CAP501
|
4.5
|
73.5
|
1.0
|
|
CE1
|
A:HIS280
|
4.5
|
71.0
|
1.0
|
|
CB
|
A:GLU190
|
4.6
|
73.3
|
1.0
|
|
C5
|
A:CAP501
|
4.6
|
73.5
|
1.0
|
|
CA
|
A:ASP189
|
4.6
|
71.9
|
1.0
|
|
CB
|
A:THR159
|
4.7
|
67.7
|
1.0
|
|
CG
|
A:GLU190
|
4.7
|
73.3
|
1.0
|
|
CD2
|
A:HIS280
|
4.7
|
71.0
|
1.0
|
|
CE
|
A:LYS163
|
4.7
|
73.7
|
1.0
|
|
O4
|
A:CAP501
|
4.9
|
73.5
|
1.0
|
|
C
|
A:ASP189
|
4.9
|
71.9
|
1.0
|
|
CG
|
B:ASN109
|
4.9
|
74.8
|
1.0
|
|
CA
|
A:GLU190
|
5.0
|
73.3
|
1.0
|
|
Magnesium binding site 2 out
of 16 in 7qvi
Go back to
Magnesium Binding Sites List in 7qvi
Magnesium binding site 2 out
of 16 in the Fiber-Forming Rubisco Derived From Ancestral Sequence Reconstruction and Rational Engineering
 Mono view
 Stereo pair view
|
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 2 of Fiber-Forming Rubisco Derived From Ancestral Sequence Reconstruction and Rational Engineering within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Mg502
b:86.5
occ:1.00
|
O7
|
B:CAP501
|
2.1
|
91.5
|
1.0
|
|
OE1
|
B:GLU190
|
2.1
|
85.3
|
1.0
|
|
O2
|
B:CAP501
|
2.2
|
91.5
|
1.0
|
|
OD1
|
B:ASP189
|
2.2
|
87.0
|
1.0
|
|
O3
|
B:CAP501
|
2.2
|
91.5
|
1.0
|
|
OQ2
|
B:KCX187
|
2.3
|
86.7
|
1.0
|
|
C2
|
B:CAP501
|
2.8
|
91.5
|
1.0
|
|
C
|
B:CAP501
|
2.8
|
91.5
|
1.0
|
|
C3
|
B:CAP501
|
3.0
|
91.5
|
1.0
|
|
CX
|
B:KCX187
|
3.2
|
86.7
|
1.0
|
|
CD
|
B:GLU190
|
3.2
|
85.3
|
1.0
|
|
CG
|
B:ASP189
|
3.4
|
87.0
|
1.0
|
|
OQ1
|
B:KCX187
|
3.5
|
86.7
|
1.0
|
|
OE2
|
B:GLU190
|
3.7
|
85.3
|
1.0
|
|
NE2
|
B:HIS280
|
3.9
|
82.5
|
1.0
|
|
OD2
|
B:ASP189
|
3.9
|
87.0
|
1.0
|
|
C4
|
B:CAP501
|
4.0
|
91.5
|
1.0
|
|
O6
|
B:CAP501
|
4.0
|
91.5
|
1.0
|
|
N
|
B:GLU190
|
4.1
|
85.3
|
1.0
|
|
NZ
|
B:LYS161
|
4.1
|
88.8
|
1.0
|
|
CG2
|
B:THR159
|
4.2
|
90.2
|
1.0
|
|
C1
|
B:CAP501
|
4.2
|
91.5
|
1.0
|
|
CE
|
B:LYS163
|
4.4
|
88.7
|
1.0
|
|
NZ
|
B:KCX187
|
4.4
|
86.7
|
1.0
|
|
ND2
|
A:ASN109
|
4.5
|
87.8
|
1.0
|
|
CG
|
B:GLU190
|
4.5
|
85.3
|
1.0
|
|
CB
|
B:ASP189
|
4.5
|
87.0
|
1.0
|
|
CA
|
B:ASP189
|
4.6
|
87.0
|
1.0
|
|
C5
|
B:CAP501
|
4.6
|
91.5
|
1.0
|
|
CB
|
B:GLU190
|
4.6
|
85.3
|
1.0
|
|
CE1
|
B:HIS280
|
4.6
|
82.5
|
1.0
|
|
O1
|
B:CAP501
|
4.6
|
91.5
|
1.0
|
|
NZ
|
B:LYS163
|
4.8
|
88.7
|
1.0
|
|
CD2
|
B:HIS280
|
4.8
|
82.5
|
1.0
|
|
C
|
B:ASP189
|
4.9
|
87.0
|
1.0
|
|
Magnesium binding site 3 out
of 16 in 7qvi
Go back to
Magnesium Binding Sites List in 7qvi
Magnesium binding site 3 out
of 16 in the Fiber-Forming Rubisco Derived From Ancestral Sequence Reconstruction and Rational Engineering
 Mono view
 Stereo pair view
|
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 3 of Fiber-Forming Rubisco Derived From Ancestral Sequence Reconstruction and Rational Engineering within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Mg502
b:71.7
occ:1.00
|
OE1
|
C:GLU190
|
2.0
|
71.6
|
1.0
|
|
O2
|
C:CAP501
|
2.0
|
74.0
|
1.0
|
|
O3
|
C:CAP501
|
2.0
|
74.0
|
1.0
|
|
OQ1
|
C:KCX187
|
2.2
|
71.7
|
1.0
|
|
O6
|
C:CAP501
|
2.2
|
74.0
|
1.0
|
|
C2
|
C:CAP501
|
2.6
|
74.0
|
1.0
|
|
C
|
C:CAP501
|
2.8
|
74.0
|
1.0
|
|
C3
|
C:CAP501
|
2.8
|
74.0
|
1.0
|
|
OD1
|
C:ASP189
|
2.9
|
71.0
|
1.0
|
|
CD
|
C:GLU190
|
3.0
|
71.6
|
1.0
|
|
CX
|
C:KCX187
|
3.2
|
71.7
|
1.0
|
|
OE2
|
C:GLU190
|
3.5
|
71.6
|
1.0
|
|
OQ2
|
C:KCX187
|
3.6
|
71.7
|
1.0
|
|
C4
|
C:CAP501
|
3.8
|
74.0
|
1.0
|
|
CG2
|
C:THR159
|
3.8
|
66.7
|
1.0
|
|
CG
|
C:ASP189
|
4.0
|
71.0
|
1.0
|
|
NE2
|
C:HIS280
|
4.0
|
70.8
|
1.0
|
|
O7
|
C:CAP501
|
4.0
|
74.0
|
1.0
|
|
N
|
C:GLU190
|
4.1
|
71.6
|
1.0
|
|
C1
|
C:CAP501
|
4.1
|
74.0
|
1.0
|
|
NZ
|
C:LYS161
|
4.1
|
68.0
|
1.0
|
|
OG1
|
C:THR159
|
4.2
|
66.7
|
1.0
|
|
CG
|
C:GLU190
|
4.3
|
71.6
|
1.0
|
|
NZ
|
C:KCX187
|
4.4
|
71.7
|
1.0
|
|
CB
|
C:GLU190
|
4.4
|
71.6
|
1.0
|
|
O1
|
C:CAP501
|
4.5
|
74.0
|
1.0
|
|
C5
|
C:CAP501
|
4.5
|
74.0
|
1.0
|
|
CB
|
C:THR159
|
4.5
|
66.7
|
1.0
|
|
OD2
|
C:ASP189
|
4.6
|
71.0
|
1.0
|
|
CA
|
C:ASP189
|
4.6
|
71.0
|
1.0
|
|
CD2
|
C:HIS280
|
4.7
|
70.8
|
1.0
|
|
ND2
|
D:ASN109
|
4.8
|
76.6
|
1.0
|
|
CE1
|
C:HIS280
|
4.8
|
70.8
|
1.0
|
|
C
|
C:ASP189
|
4.9
|
71.0
|
1.0
|
|
CA
|
C:GLU190
|
4.9
|
71.6
|
1.0
|
|
CB
|
C:ASP189
|
4.9
|
71.0
|
1.0
|
|
O4
|
C:CAP501
|
5.0
|
74.0
|
1.0
|
|
Magnesium binding site 4 out
of 16 in 7qvi
Go back to
Magnesium Binding Sites List in 7qvi
Magnesium binding site 4 out
of 16 in the Fiber-Forming Rubisco Derived From Ancestral Sequence Reconstruction and Rational Engineering
 Mono view
 Stereo pair view
|
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 4 of Fiber-Forming Rubisco Derived From Ancestral Sequence Reconstruction and Rational Engineering within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
D:Mg502
b:91.8
occ:1.00
|
O2
|
D:CAP501
|
2.0
|
94.2
|
1.0
|
|
OE1
|
D:GLU190
|
2.1
|
87.7
|
1.0
|
|
O3
|
D:CAP501
|
2.1
|
94.2
|
1.0
|
|
O7
|
D:CAP501
|
2.2
|
94.2
|
1.0
|
|
OD1
|
D:ASP189
|
2.5
|
88.5
|
1.0
|
|
OQ1
|
D:KCX187
|
2.6
|
88.4
|
1.0
|
|
C2
|
D:CAP501
|
2.6
|
94.2
|
1.0
|
|
C
|
D:CAP501
|
2.8
|
94.2
|
1.0
|
|
CD
|
D:GLU190
|
2.8
|
87.7
|
1.0
|
|
C3
|
D:CAP501
|
2.9
|
94.2
|
1.0
|
|
OE2
|
D:GLU190
|
2.9
|
87.7
|
1.0
|
|
NZ
|
D:LYS163
|
3.3
|
90.9
|
1.0
|
|
CG
|
D:ASP189
|
3.6
|
88.5
|
1.0
|
|
CX
|
D:KCX187
|
3.6
|
88.4
|
1.0
|
|
ND2
|
C:ASN109
|
3.7
|
90.5
|
1.0
|
|
OQ2
|
D:KCX187
|
3.9
|
88.4
|
1.0
|
|
OD2
|
D:ASP189
|
4.0
|
88.5
|
1.0
|
|
O6
|
D:CAP501
|
4.0
|
94.2
|
1.0
|
|
C4
|
D:CAP501
|
4.0
|
94.2
|
1.0
|
|
NZ
|
D:LYS161
|
4.1
|
91.6
|
1.0
|
|
C1
|
D:CAP501
|
4.1
|
94.2
|
1.0
|
|
CG
|
D:GLU190
|
4.2
|
87.7
|
1.0
|
|
NE2
|
D:HIS280
|
4.3
|
85.0
|
1.0
|
|
N
|
D:GLU190
|
4.4
|
87.7
|
1.0
|
|
C5
|
D:CAP501
|
4.5
|
94.2
|
1.0
|
|
O1
|
D:CAP501
|
4.5
|
94.2
|
1.0
|
|
CG
|
C:ASN109
|
4.7
|
90.5
|
1.0
|
|
CB
|
D:GLU190
|
4.8
|
87.7
|
1.0
|
|
CE1
|
D:HIS280
|
4.8
|
85.0
|
1.0
|
|
NZ
|
D:KCX187
|
4.8
|
88.4
|
1.0
|
|
CE
|
D:LYS163
|
4.8
|
90.9
|
1.0
|
|
CG2
|
D:THR159
|
4.8
|
90.5
|
1.0
|
|
CB
|
D:ASP189
|
4.8
|
88.5
|
1.0
|
|
OG1
|
D:THR159
|
4.9
|
90.5
|
1.0
|
|
CA
|
D:ASP189
|
4.9
|
88.5
|
1.0
|
|
Magnesium binding site 5 out
of 16 in 7qvi
Go back to
Magnesium Binding Sites List in 7qvi
Magnesium binding site 5 out
of 16 in the Fiber-Forming Rubisco Derived From Ancestral Sequence Reconstruction and Rational Engineering
 Mono view
 Stereo pair view
|
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 5 of Fiber-Forming Rubisco Derived From Ancestral Sequence Reconstruction and Rational Engineering within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
E:Mg502
b:74.4
occ:1.00
|
OE1
|
E:GLU190
|
2.0
|
72.2
|
1.0
|
|
O2
|
E:CAP501
|
2.1
|
75.2
|
1.0
|
|
O6
|
E:CAP501
|
2.1
|
75.2
|
1.0
|
|
O3
|
E:CAP501
|
2.1
|
75.2
|
1.0
|
|
OQ1
|
E:KCX187
|
2.4
|
71.7
|
1.0
|
|
OD1
|
E:ASP189
|
2.6
|
71.3
|
1.0
|
|
C2
|
E:CAP501
|
2.6
|
75.2
|
1.0
|
|
C
|
E:CAP501
|
2.7
|
75.2
|
1.0
|
|
C3
|
E:CAP501
|
2.9
|
75.2
|
1.0
|
|
CD
|
E:GLU190
|
3.0
|
72.2
|
1.0
|
|
CX
|
E:KCX187
|
3.4
|
71.7
|
1.0
|
|
OE2
|
E:GLU190
|
3.4
|
72.2
|
1.0
|
|
CG
|
E:ASP189
|
3.5
|
71.3
|
1.0
|
|
OQ2
|
E:KCX187
|
3.8
|
71.7
|
1.0
|
|
C4
|
E:CAP501
|
3.8
|
75.2
|
1.0
|
|
NE2
|
E:HIS280
|
3.8
|
71.6
|
1.0
|
|
ND2
|
F:ASN109
|
3.9
|
75.4
|
1.0
|
|
CG2
|
E:THR159
|
4.0
|
68.7
|
1.0
|
|
O7
|
E:CAP501
|
4.0
|
75.2
|
1.0
|
|
OD2
|
E:ASP189
|
4.0
|
71.3
|
1.0
|
|
NZ
|
E:LYS161
|
4.1
|
68.2
|
1.0
|
|
C1
|
E:CAP501
|
4.1
|
75.2
|
1.0
|
|
N
|
E:GLU190
|
4.2
|
72.2
|
1.0
|
|
CG
|
E:GLU190
|
4.3
|
72.2
|
1.0
|
|
OG1
|
E:THR159
|
4.4
|
68.7
|
1.0
|
|
NZ
|
E:KCX187
|
4.5
|
71.7
|
1.0
|
|
C5
|
E:CAP501
|
4.5
|
75.2
|
1.0
|
|
O1
|
E:CAP501
|
4.5
|
75.2
|
1.0
|
|
CD2
|
E:HIS280
|
4.6
|
71.6
|
1.0
|
|
CB
|
E:GLU190
|
4.6
|
72.2
|
1.0
|
|
CB
|
E:ASP189
|
4.6
|
71.3
|
1.0
|
|
CA
|
E:ASP189
|
4.7
|
71.3
|
1.0
|
|
CB
|
E:THR159
|
4.7
|
68.7
|
1.0
|
|
NZ
|
E:LYS163
|
4.7
|
71.3
|
1.0
|
|
CE1
|
E:HIS280
|
4.8
|
71.6
|
1.0
|
|
CE
|
E:LYS163
|
4.9
|
71.3
|
1.0
|
|
C
|
E:ASP189
|
5.0
|
71.3
|
1.0
|
|
Magnesium binding site 6 out
of 16 in 7qvi
Go back to
Magnesium Binding Sites List in 7qvi
Magnesium binding site 6 out
of 16 in the Fiber-Forming Rubisco Derived From Ancestral Sequence Reconstruction and Rational Engineering
 Mono view
 Stereo pair view
|
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 6 of Fiber-Forming Rubisco Derived From Ancestral Sequence Reconstruction and Rational Engineering within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
F:Mg502
b:90.9
occ:1.00
|
O2
|
F:CAP501
|
2.1
|
93.9
|
1.0
|
|
O3
|
F:CAP501
|
2.1
|
93.9
|
1.0
|
|
O7
|
F:CAP501
|
2.1
|
93.9
|
1.0
|
|
OD1
|
F:ASP189
|
2.4
|
87.9
|
1.0
|
|
C2
|
F:CAP501
|
2.7
|
93.9
|
1.0
|
|
OE1
|
F:GLU190
|
2.7
|
86.6
|
1.0
|
|
OQ2
|
F:KCX187
|
2.7
|
87.9
|
1.0
|
|
C
|
F:CAP501
|
2.8
|
93.9
|
1.0
|
|
C3
|
F:CAP501
|
2.9
|
93.9
|
1.0
|
|
CG
|
F:ASP189
|
3.0
|
87.9
|
1.0
|
|
OD2
|
F:ASP189
|
3.0
|
87.9
|
1.0
|
|
OE2
|
F:GLU190
|
3.2
|
86.6
|
1.0
|
|
CD
|
F:GLU190
|
3.3
|
86.6
|
1.0
|
|
CX
|
F:KCX187
|
3.7
|
87.9
|
1.0
|
|
NZ
|
F:LYS161
|
3.8
|
91.5
|
1.0
|
|
OQ1
|
F:KCX187
|
3.9
|
87.9
|
1.0
|
|
C4
|
F:CAP501
|
3.9
|
93.9
|
1.0
|
|
NZ
|
F:LYS163
|
4.0
|
86.7
|
1.0
|
|
ND2
|
E:ASN109
|
4.0
|
90.0
|
1.0
|
|
O6
|
F:CAP501
|
4.0
|
93.9
|
1.0
|
|
C1
|
F:CAP501
|
4.1
|
93.9
|
1.0
|
|
CG2
|
F:THR159
|
4.3
|
91.9
|
1.0
|
|
CB
|
F:ASP189
|
4.4
|
87.9
|
1.0
|
|
C5
|
F:CAP501
|
4.4
|
93.9
|
1.0
|
|
N
|
F:GLU190
|
4.5
|
86.6
|
1.0
|
|
O1
|
F:CAP501
|
4.5
|
93.9
|
1.0
|
|
NE2
|
F:HIS280
|
4.6
|
84.7
|
1.0
|
|
CE1
|
F:HIS280
|
4.6
|
84.7
|
1.0
|
|
CE
|
F:LYS163
|
4.6
|
86.7
|
1.0
|
|
CG
|
F:GLU190
|
4.6
|
86.6
|
1.0
|
|
CA
|
F:ASP189
|
4.7
|
87.9
|
1.0
|
|
OG1
|
F:THR159
|
4.8
|
91.9
|
1.0
|
|
NZ
|
F:KCX187
|
4.9
|
87.9
|
1.0
|
|
CE
|
F:LYS161
|
4.9
|
91.5
|
1.0
|
|
CB
|
F:THR159
|
5.0
|
91.9
|
1.0
|
|
Magnesium binding site 7 out
of 16 in 7qvi
Go back to
Magnesium Binding Sites List in 7qvi
Magnesium binding site 7 out
of 16 in the Fiber-Forming Rubisco Derived From Ancestral Sequence Reconstruction and Rational Engineering
 Mono view
 Stereo pair view
|
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 7 of Fiber-Forming Rubisco Derived From Ancestral Sequence Reconstruction and Rational Engineering within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
G:Mg502
b:73.0
occ:1.00
|
OE1
|
G:GLU190
|
2.0
|
71.5
|
1.0
|
|
O2
|
G:CAP501
|
2.0
|
72.7
|
1.0
|
|
O6
|
G:CAP501
|
2.0
|
72.7
|
1.0
|
|
OD1
|
G:ASP189
|
2.1
|
68.5
|
1.0
|
|
O3
|
G:CAP501
|
2.4
|
72.7
|
1.0
|
|
OQ1
|
G:KCX187
|
2.5
|
71.7
|
1.0
|
|
C2
|
G:CAP501
|
2.7
|
72.7
|
1.0
|
|
C
|
G:CAP501
|
2.7
|
72.7
|
1.0
|
|
CD
|
G:GLU190
|
2.8
|
71.5
|
1.0
|
|
OE2
|
G:GLU190
|
3.0
|
71.5
|
1.0
|
|
C3
|
G:CAP501
|
3.0
|
72.7
|
1.0
|
|
CG
|
G:ASP189
|
3.2
|
68.5
|
1.0
|
|
CX
|
G:KCX187
|
3.5
|
71.7
|
1.0
|
|
OD2
|
G:ASP189
|
3.6
|
68.5
|
1.0
|
|
NZ
|
G:LYS161
|
3.9
|
67.7
|
1.0
|
|
OQ2
|
G:KCX187
|
3.9
|
71.7
|
1.0
|
|
O7
|
G:CAP501
|
3.9
|
72.7
|
1.0
|
|
C4
|
G:CAP501
|
4.0
|
72.7
|
1.0
|
|
N
|
G:GLU190
|
4.0
|
71.5
|
1.0
|
|
CG2
|
G:THR159
|
4.0
|
66.0
|
1.0
|
|
C1
|
G:CAP501
|
4.1
|
72.7
|
1.0
|
|
CG
|
G:GLU190
|
4.2
|
71.5
|
1.0
|
|
NE2
|
G:HIS280
|
4.3
|
70.8
|
1.0
|
|
ND2
|
H:ASN109
|
4.3
|
76.0
|
1.0
|
|
CB
|
G:ASP189
|
4.4
|
68.5
|
1.0
|
|
CE
|
G:LYS163
|
4.4
|
70.5
|
1.0
|
|
O1
|
G:CAP501
|
4.5
|
72.7
|
1.0
|
|
CA
|
G:ASP189
|
4.5
|
68.5
|
1.0
|
|
CB
|
G:GLU190
|
4.5
|
71.5
|
1.0
|
|
OG1
|
G:THR159
|
4.6
|
66.0
|
1.0
|
|
NZ
|
G:KCX187
|
4.7
|
71.7
|
1.0
|
|
NZ
|
G:LYS163
|
4.8
|
70.5
|
1.0
|
|
C5
|
G:CAP501
|
4.8
|
72.7
|
1.0
|
|
C
|
G:ASP189
|
4.8
|
68.5
|
1.0
|
|
CB
|
G:THR159
|
4.8
|
66.0
|
1.0
|
|
CA
|
G:GLU190
|
4.9
|
71.5
|
1.0
|
|
CE1
|
G:HIS280
|
5.0
|
70.8
|
1.0
|
|
Magnesium binding site 8 out
of 16 in 7qvi
Go back to
Magnesium Binding Sites List in 7qvi
Magnesium binding site 8 out
of 16 in the Fiber-Forming Rubisco Derived From Ancestral Sequence Reconstruction and Rational Engineering
 Mono view
 Stereo pair view
|
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 8 of Fiber-Forming Rubisco Derived From Ancestral Sequence Reconstruction and Rational Engineering within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
H:Mg502
b:87.8
occ:1.00
|
O3
|
H:CAP501
|
2.0
|
92.8
|
1.0
|
|
OD1
|
H:ASP189
|
2.0
|
88.2
|
1.0
|
|
O2
|
H:CAP501
|
2.0
|
92.8
|
1.0
|
|
OE1
|
H:GLU190
|
2.1
|
86.2
|
1.0
|
|
OQ2
|
H:KCX187
|
2.1
|
88.3
|
1.0
|
|
C2
|
H:CAP501
|
2.9
|
92.8
|
1.0
|
|
C3
|
H:CAP501
|
2.9
|
92.8
|
1.0
|
|
O7
|
H:CAP501
|
3.2
|
92.8
|
1.0
|
|
CG
|
H:ASP189
|
3.2
|
88.2
|
1.0
|
|
CD
|
H:GLU190
|
3.3
|
86.2
|
1.0
|
|
CX
|
H:KCX187
|
3.3
|
88.3
|
1.0
|
|
C
|
H:CAP501
|
3.5
|
92.8
|
1.0
|
|
NE2
|
H:HIS280
|
3.6
|
83.0
|
1.0
|
|
NZ
|
H:LYS163
|
3.7
|
88.6
|
1.0
|
|
OD2
|
H:ASP189
|
3.8
|
88.2
|
1.0
|
|
N
|
H:GLU190
|
3.9
|
86.2
|
1.0
|
|
ND2
|
G:ASN109
|
3.9
|
88.8
|
1.0
|
|
OQ1
|
H:KCX187
|
3.9
|
88.3
|
1.0
|
|
OE2
|
H:GLU190
|
4.0
|
86.2
|
1.0
|
|
CG2
|
H:THR159
|
4.2
|
89.8
|
1.0
|
|
NZ
|
H:LYS161
|
4.2
|
88.9
|
1.0
|
|
C4
|
H:CAP501
|
4.2
|
92.8
|
1.0
|
|
CB
|
H:GLU190
|
4.2
|
86.2
|
1.0
|
|
C1
|
H:CAP501
|
4.2
|
92.8
|
1.0
|
|
NZ
|
H:KCX187
|
4.3
|
88.3
|
1.0
|
|
CG
|
H:GLU190
|
4.4
|
86.2
|
1.0
|
|
CE1
|
H:HIS280
|
4.4
|
83.0
|
1.0
|
|
CB
|
H:ASP189
|
4.4
|
88.2
|
1.0
|
|
CA
|
H:ASP189
|
4.4
|
88.2
|
1.0
|
|
CD2
|
H:HIS280
|
4.4
|
83.0
|
1.0
|
|
OG1
|
H:THR159
|
4.6
|
89.8
|
1.0
|
|
C5
|
H:CAP501
|
4.6
|
92.8
|
1.0
|
|
C
|
H:ASP189
|
4.7
|
88.2
|
1.0
|
|
CA
|
H:GLU190
|
4.7
|
86.2
|
1.0
|
|
O1
|
H:CAP501
|
4.7
|
92.8
|
1.0
|
|
O6
|
H:CAP501
|
4.8
|
92.8
|
1.0
|
|
CB
|
H:THR159
|
4.9
|
89.8
|
1.0
|
|
CG
|
G:ASN109
|
5.0
|
88.8
|
1.0
|
|
Magnesium binding site 9 out
of 16 in 7qvi
Go back to
Magnesium Binding Sites List in 7qvi
Magnesium binding site 9 out
of 16 in the Fiber-Forming Rubisco Derived From Ancestral Sequence Reconstruction and Rational Engineering
 Mono view
 Stereo pair view
|
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 9 of Fiber-Forming Rubisco Derived From Ancestral Sequence Reconstruction and Rational Engineering within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
I:Mg502
b:71.7
occ:1.00
|
O2
|
I:CAP501
|
2.0
|
71.7
|
1.0
|
|
OQ1
|
I:KCX187
|
2.1
|
71.7
|
1.0
|
|
O3
|
I:CAP501
|
2.2
|
71.7
|
1.0
|
|
O6
|
I:CAP501
|
2.2
|
71.7
|
1.0
|
|
OD1
|
I:ASP189
|
2.2
|
65.2
|
1.0
|
|
OE1
|
I:GLU190
|
2.3
|
64.1
|
1.0
|
|
C2
|
I:CAP501
|
2.7
|
71.7
|
1.0
|
|
C
|
I:CAP501
|
2.9
|
71.7
|
1.0
|
|
C3
|
I:CAP501
|
2.9
|
71.7
|
1.0
|
|
CX
|
I:KCX187
|
3.3
|
71.7
|
1.0
|
|
CG
|
I:ASP189
|
3.3
|
65.2
|
1.0
|
|
CD
|
I:GLU190
|
3.3
|
64.1
|
1.0
|
|
OE2
|
I:GLU190
|
3.7
|
64.1
|
1.0
|
|
OD2
|
I:ASP189
|
3.8
|
65.2
|
1.0
|
|
OQ2
|
I:KCX187
|
3.8
|
71.7
|
1.0
|
|
C4
|
I:CAP501
|
3.9
|
71.7
|
1.0
|
|
NE2
|
I:HIS280
|
3.9
|
61.5
|
1.0
|
|
NZ
|
I:LYS161
|
4.0
|
66.2
|
1.0
|
|
O7
|
I:CAP501
|
4.1
|
71.7
|
1.0
|
|
ND2
|
J:ASN109
|
4.1
|
67.2
|
1.0
|
|
C1
|
I:CAP501
|
4.1
|
71.7
|
1.0
|
|
N
|
I:GLU190
|
4.2
|
64.1
|
1.0
|
|
CG2
|
I:THR159
|
4.3
|
65.9
|
1.0
|
|
NZ
|
I:KCX187
|
4.3
|
71.7
|
1.0
|
|
CB
|
I:ASP189
|
4.5
|
65.2
|
1.0
|
|
CA
|
I:ASP189
|
4.6
|
65.2
|
1.0
|
|
O1
|
I:CAP501
|
4.6
|
71.7
|
1.0
|
|
CG
|
I:GLU190
|
4.6
|
64.1
|
1.0
|
|
C5
|
I:CAP501
|
4.7
|
71.7
|
1.0
|
|
OG1
|
I:THR159
|
4.7
|
65.9
|
1.0
|
|
CD2
|
I:HIS280
|
4.7
|
61.5
|
1.0
|
|
CE
|
I:LYS163
|
4.8
|
67.2
|
1.0
|
|
CE1
|
I:HIS280
|
4.8
|
61.5
|
1.0
|
|
CB
|
I:GLU190
|
4.8
|
64.1
|
1.0
|
|
C
|
I:ASP189
|
4.9
|
65.2
|
1.0
|
|
O4
|
I:CAP501
|
5.0
|
71.7
|
1.0
|
|
Magnesium binding site 10 out
of 16 in 7qvi
Go back to
Magnesium Binding Sites List in 7qvi
Magnesium binding site 10 out
of 16 in the Fiber-Forming Rubisco Derived From Ancestral Sequence Reconstruction and Rational Engineering
 Mono view
 Stereo pair view
|
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 10 of Fiber-Forming Rubisco Derived From Ancestral Sequence Reconstruction and Rational Engineering within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
J:Mg502
b:71.7
occ:1.00
|
O3
|
J:CAP501
|
2.0
|
71.7
|
1.0
|
|
OE1
|
J:GLU190
|
2.1
|
58.9
|
1.0
|
|
O2
|
J:CAP501
|
2.1
|
71.7
|
1.0
|
|
O7
|
J:CAP501
|
2.3
|
71.7
|
1.0
|
|
OD1
|
J:ASP189
|
2.3
|
58.2
|
1.0
|
|
OQ2
|
J:KCX187
|
2.6
|
71.7
|
1.0
|
|
C2
|
J:CAP501
|
2.7
|
71.7
|
1.0
|
|
C3
|
J:CAP501
|
2.8
|
71.7
|
1.0
|
|
C
|
J:CAP501
|
2.9
|
71.7
|
1.0
|
|
CD
|
J:GLU190
|
3.2
|
58.9
|
1.0
|
|
CG
|
J:ASP189
|
3.4
|
58.2
|
1.0
|
|
NZ
|
J:LYS163
|
3.5
|
59.1
|
1.0
|
|
CX
|
J:KCX187
|
3.6
|
71.7
|
1.0
|
|
OE2
|
J:GLU190
|
3.7
|
58.9
|
1.0
|
|
NZ
|
J:LYS161
|
3.7
|
57.8
|
1.0
|
|
C4
|
J:CAP501
|
3.8
|
71.7
|
1.0
|
|
OD2
|
J:ASP189
|
3.9
|
58.2
|
1.0
|
|
OQ1
|
J:KCX187
|
4.0
|
71.7
|
1.0
|
|
O6
|
J:CAP501
|
4.1
|
71.7
|
1.0
|
|
C1
|
J:CAP501
|
4.2
|
71.7
|
1.0
|
|
N
|
J:GLU190
|
4.2
|
58.9
|
1.0
|
|
NE2
|
J:HIS280
|
4.2
|
60.0
|
1.0
|
|
CG2
|
J:THR159
|
4.2
|
56.7
|
1.0
|
|
OD1
|
I:ASN109
|
4.4
|
61.7
|
1.0
|
|
CG
|
J:GLU190
|
4.5
|
58.9
|
1.0
|
|
CB
|
J:GLU190
|
4.5
|
58.9
|
1.0
|
|
C5
|
J:CAP501
|
4.6
|
71.7
|
1.0
|
|
O1
|
J:CAP501
|
4.6
|
71.7
|
1.0
|
|
CB
|
J:ASP189
|
4.6
|
58.2
|
1.0
|
|
NZ
|
J:KCX187
|
4.7
|
71.7
|
1.0
|
|
CA
|
J:ASP189
|
4.7
|
58.2
|
1.0
|
|
OG1
|
J:THR159
|
4.8
|
56.7
|
1.0
|
|
CE1
|
J:HIS280
|
4.8
|
60.0
|
1.0
|
|
O4
|
J:CAP501
|
4.9
|
71.7
|
1.0
|
|
CE
|
J:LYS163
|
4.9
|
59.1
|
1.0
|
|
Reference:
L.Schulz,
Z.Guo,
J.Zarzycki,
W.Steinchen,
J.M.Schuller,
T.Heimerl,
S.Prinz,
O.Mueller-Cajar,
T.J.Erb,
G.K.A.Hochberg.
Evolution of Increased Complexity and Specificity at the Dawn of Form I Rubiscos. Science V. 378 155 2022.
ISSN: ESSN 1095-9203
PubMed: 36227987
DOI: 10.1126/SCIENCE.ABQ1416
Page generated: Thu Oct 3 07:02:04 2024
|
