Atomistry » Magnesium » PDB 7qsc-7qzu » 7qz2
Atomistry »
  Magnesium »
    PDB 7qsc-7qzu »
      7qz2 »

Magnesium in PDB 7qz2: Crystal Structure of Gacs D1 Domain in Complex with BEF3-

Enzymatic activity of Crystal Structure of Gacs D1 Domain in Complex with BEF3-

All present enzymatic activity of Crystal Structure of Gacs D1 Domain in Complex with BEF3-:
2.7.13.3;

Protein crystallography data

The structure of Crystal Structure of Gacs D1 Domain in Complex with BEF3-, PDB code: 7qz2 was solved by F.Fadel, V.Bassim, T.Botzanowski, V.I.Francis, P.Legrand, S.L.Porter, Y.Bourne, S.Cianferani, F.Vincent, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 44.62 / 1.87
Space group C 2 2 21
Cell size a, b, c (Å), α, β, γ (°) 69.695, 74.016, 93.342, 90, 90, 90
R / Rfree (%) 16.8 / 21.3

Other elements in 7qz2:

The structure of Crystal Structure of Gacs D1 Domain in Complex with BEF3- also contains other interesting chemical elements:

Cadmium (Cd) 3 atoms
Fluorine (F) 6 atoms

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Crystal Structure of Gacs D1 Domain in Complex with BEF3- (pdb code 7qz2). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the Crystal Structure of Gacs D1 Domain in Complex with BEF3-, PDB code: 7qz2:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in 7qz2

Go back to Magnesium Binding Sites List in 7qz2
Magnesium binding site 1 out of 2 in the Crystal Structure of Gacs D1 Domain in Complex with BEF3-


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of Gacs D1 Domain in Complex with BEF3- within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg805

b:15.0
occ:1.00
F1 A:BEF804 1.8 23.4 1.0
OD2 A:ASP715 2.0 16.5 1.0
OD1 A:ASP672 2.0 16.7 1.0
O A:GLN717 2.0 16.1 1.0
O A:HOH954 2.1 19.7 1.0
O A:HOH920 2.1 19.9 1.0
CG A:ASP715 3.0 14.8 1.0
CG A:ASP672 3.0 22.1 1.0
C A:GLN717 3.3 15.2 1.0
BE A:BEF804 3.4 16.1 1.0
OD1 A:ASP715 3.4 19.0 1.0
OD2 A:ASP672 3.5 22.8 1.0
OD1 A:ASP671 3.9 19.6 1.0
CG A:MET718 4.1 15.7 1.0
CA A:GLN717 4.1 19.6 1.0
O A:HOH974 4.2 37.0 1.0
CB A:GLN717 4.2 21.5 1.0
N A:MET718 4.3 16.4 1.0
CB A:ASP715 4.3 12.7 1.0
N A:GLN717 4.3 20.4 1.0
CB A:ASP672 4.3 17.3 1.0
N A:ASP672 4.3 18.6 1.0
F3 A:BEF804 4.4 22.4 1.0
CA A:MET718 4.5 15.8 1.0
F2 A:BEF804 4.6 22.0 1.0
CG A:ASP671 4.6 26.0 1.0
NZ A:LYS770 4.7 29.3 1.0
N A:ASN673 4.8 17.1 1.0
CA A:ASP672 4.8 20.3 1.0
OD2 A:ASP671 4.9 22.6 1.0
CB A:MET718 4.9 14.3 1.0

Magnesium binding site 2 out of 2 in 7qz2

Go back to Magnesium Binding Sites List in 7qz2
Magnesium binding site 2 out of 2 in the Crystal Structure of Gacs D1 Domain in Complex with BEF3-


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Crystal Structure of Gacs D1 Domain in Complex with BEF3- within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mg802

b:16.7
occ:1.00
F2 B:BEF801 1.7 23.4 1.0
O B:HOH960 2.1 20.7 1.0
OD1 B:ASP672 2.1 20.4 1.0
O B:HOH934 2.1 17.4 1.0
OD2 B:ASP715 2.1 18.1 1.0
O B:GLN717 2.1 16.8 1.0
CG B:ASP715 3.1 15.8 1.0
CG B:ASP672 3.1 24.4 1.0
BE B:BEF801 3.3 18.4 1.0
C B:GLN717 3.3 12.6 1.0
OD1 B:ASP715 3.4 19.1 1.0
OD2 B:ASP672 3.5 23.8 1.0
OD1 B:ASP671 4.0 21.8 1.0
CA B:GLN717 4.1 18.6 1.0
O B:HOH980 4.2 39.2 1.0
CB B:GLN717 4.2 25.6 1.0
CG B:MET718 4.2 18.7 1.0
O B:HOH924 4.3 30.5 1.0
N B:GLN717 4.3 16.0 1.0
N B:MET718 4.3 16.7 1.0
F1 B:BEF801 4.4 26.4 1.0
CB B:ASP715 4.4 18.0 1.0
CB B:ASP672 4.4 23.1 1.0
N B:ASP672 4.4 14.9 1.0
O B:HOH942 4.4 34.5 1.0
F3 B:BEF801 4.5 21.9 1.0
O B:HOH1002 4.6 44.6 1.0
CA B:MET718 4.6 17.4 1.0
NZ B:LYS770 4.8 22.5 1.0
CG B:ASP671 4.8 30.6 1.0
N B:ASN673 4.8 23.8 1.0
CA B:ASP672 4.8 19.5 1.0

Reference:

F.Fadel, V.Bassim, T.Botzanowski, V.I.Francis, P.Legrand, S.L.Porter, Y.Bourne, S.Cianferani, F.Vincent. Crystal Structure of Gacs D1 Domain in Complex with BEF3- To Be Published.
Page generated: Thu Oct 3 07:02:49 2024

Last articles

Zn in 9JYW
Zn in 9IR4
Zn in 9IR3
Zn in 9GMX
Zn in 9GMW
Zn in 9JEJ
Zn in 9ERF
Zn in 9ERE
Zn in 9EGV
Zn in 9EGW
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy