Magnesium in PDB 7qz2: Crystal Structure of Gacs D1 Domain in Complex with BEF3-

All present enzymatic activity of Crystal Structure of Gacs D1 Domain in Complex with BEF3-:
2.7.13.3;

The structure of Crystal Structure of Gacs D1 Domain in Complex with BEF3-, PDB code: 7qz2 was solved by F.Fadel, V.Bassim, T.Botzanowski, V.I.Francis, P.Legrand, S.L.Porter, Y.Bourne, S.Cianferani, F.Vincent, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	44.62 / 1.87
Space group	C 2 2 21
Cell size a, b, c (Å), α, β, γ (°)	69.695, 74.016, 93.342, 90, 90, 90
R / Rfree (%)	16.8 / 21.3

The structure of Crystal Structure of Gacs D1 Domain in Complex with BEF3- also contains other interesting chemical elements:

Cadmium	(Cd)	3 atoms
Fluorine	(F)	6 atoms

The binding sites of Magnesium atom in the Crystal Structure of Gacs D1 Domain in Complex with BEF3- (pdb code 7qz2). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the Crystal Structure of Gacs D1 Domain in Complex with BEF3-, PDB code: 7qz2:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in the Crystal Structure of Gacs D1 Domain in Complex with BEF3-


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of Gacs D1 Domain in Complex with BEF3- within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg805 b:15.0 occ:1.00 F1 A:BEF804 1.8 23.4 1.0 OD2 A:ASP715 2.0 16.5 1.0 OD1 A:ASP672 2.0 16.7 1.0 O A:GLN717 2.0 16.1 1.0 O A:HOH954 2.1 19.7 1.0 O A:HOH920 2.1 19.9 1.0 CG A:ASP715 3.0 14.8 1.0 CG A:ASP672 3.0 22.1 1.0 C A:GLN717 3.3 15.2 1.0 BE A:BEF804 3.4 16.1 1.0 OD1 A:ASP715 3.4 19.0 1.0 OD2 A:ASP672 3.5 22.8 1.0 OD1 A:ASP671 3.9 19.6 1.0 CG A:MET718 4.1 15.7 1.0 CA A:GLN717 4.1 19.6 1.0 O A:HOH974 4.2 37.0 1.0 CB A:GLN717 4.2 21.5 1.0 N A:MET718 4.3 16.4 1.0 CB A:ASP715 4.3 12.7 1.0 N A:GLN717 4.3 20.4 1.0 CB A:ASP672 4.3 17.3 1.0 N A:ASP672 4.3 18.6 1.0 F3 A:BEF804 4.4 22.4 1.0 CA A:MET718 4.5 15.8 1.0 F2 A:BEF804 4.6 22.0 1.0 CG A:ASP671 4.6 26.0 1.0 NZ A:LYS770 4.7 29.3 1.0 N A:ASN673 4.8 17.1 1.0 CA A:ASP672 4.8 20.3 1.0 OD2 A:ASP671 4.9 22.6 1.0 CB A:MET718 4.9 14.3 1.0

Magnesium binding site 2 out of 2 in the Crystal Structure of Gacs D1 Domain in Complex with BEF3-


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Crystal Structure of Gacs D1 Domain in Complex with BEF3- within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg802 b:16.7 occ:1.00 F2 B:BEF801 1.7 23.4 1.0 O B:HOH960 2.1 20.7 1.0 OD1 B:ASP672 2.1 20.4 1.0 O B:HOH934 2.1 17.4 1.0 OD2 B:ASP715 2.1 18.1 1.0 O B:GLN717 2.1 16.8 1.0 CG B:ASP715 3.1 15.8 1.0 CG B:ASP672 3.1 24.4 1.0 BE B:BEF801 3.3 18.4 1.0 C B:GLN717 3.3 12.6 1.0 OD1 B:ASP715 3.4 19.1 1.0 OD2 B:ASP672 3.5 23.8 1.0 OD1 B:ASP671 4.0 21.8 1.0 CA B:GLN717 4.1 18.6 1.0 O B:HOH980 4.2 39.2 1.0 CB B:GLN717 4.2 25.6 1.0 CG B:MET718 4.2 18.7 1.0 O B:HOH924 4.3 30.5 1.0 N B:GLN717 4.3 16.0 1.0 N B:MET718 4.3 16.7 1.0 F1 B:BEF801 4.4 26.4 1.0 CB B:ASP715 4.4 18.0 1.0 CB B:ASP672 4.4 23.1 1.0 N B:ASP672 4.4 14.9 1.0 O B:HOH942 4.4 34.5 1.0 F3 B:BEF801 4.5 21.9 1.0 O B:HOH1002 4.6 44.6 1.0 CA B:MET718 4.6 17.4 1.0 NZ B:LYS770 4.8 22.5 1.0 CG B:ASP671 4.8 30.6 1.0 N B:ASN673 4.8 23.8 1.0 CA B:ASP672 4.8 19.5 1.0

F.Fadel, V.Bassim, T.Botzanowski, V.I.Francis, P.Legrand, S.L.Porter, Y.Bourne, S.Cianferani, F.Vincent. Crystal Structure of Gacs D1 Domain in Complex with BEF3- To Be Published.