Magnesium in PDB 7r4h: Phospho-Sting Binding to Adaptor Protein Complex-1

The binding sites of Magnesium atom in the Phospho-Sting Binding to Adaptor Protein Complex-1 (pdb code 7r4h). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the Phospho-Sting Binding to Adaptor Protein Complex-1, PDB code: 7r4h:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in the Phospho-Sting Binding to Adaptor Protein Complex-1


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Phospho-Sting Binding to Adaptor Protein Complex-1 within 5.0Å range: probe atom residue distance (Å) B Occ C:Mg1002 b:147.8 occ:1.00 O3A C:GTP1001 2.1 145.8 1.0 O3G C:GTP1001 2.2 145.4 1.0 O C:LEU25 2.5 145.3 1.0 PB C:GTP1001 3.1 146.3 1.0 O1B C:GTP1001 3.1 146.3 1.0 CE C:LYS30 3.2 133.8 1.0 PA C:GTP1001 3.4 145.6 1.0 PG C:GTP1001 3.4 144.6 1.0 N C:ALA28 3.4 142.7 1.0 CB C:LYS30 3.4 134.1 1.0 O1A C:GTP1001 3.5 145.7 1.0 O3B C:GTP1001 3.7 145.1 1.0 CB C:ALA28 3.7 142.3 1.0 C C:LEU25 3.7 145.2 1.0 N C:ALA27 3.8 148.5 1.0 CA C:ALA28 4.0 142.5 1.0 NZ C:LYS30 4.1 133.7 1.0 N C:LYS30 4.1 135.2 1.0 O1G C:GTP1001 4.1 144.0 1.0 C C:ASP26 4.2 147.3 1.0 CA C:ASP26 4.3 147.2 1.0 CD C:LYS30 4.3 133.4 1.0 O5' C:GTP1001 4.3 145.7 1.0 O2A C:GTP1001 4.4 145.6 1.0 CA C:LYS30 4.4 134.3 1.0 C C:ALA27 4.4 148.5 1.0 CG C:LYS30 4.4 133.6 1.0 N C:GLY29 4.5 148.6 1.0 O2B C:GTP1001 4.5 145.6 1.0 N C:ASP26 4.5 147.1 1.0 CA C:ALA27 4.5 148.5 1.0 C C:ALA28 4.5 142.6 1.0 O2G C:GTP1001 4.5 144.4 1.0 N C:LEU25 4.6 145.1 1.0 CA C:LEU25 4.8 145.2 1.0 O C:ASP26 5.0 147.5 1.0

Magnesium binding site 2 out of 2 in the Phospho-Sting Binding to Adaptor Protein Complex-1


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Phospho-Sting Binding to Adaptor Protein Complex-1 within 5.0Å range: probe atom residue distance (Å) B Occ H:Mg1002 b:81.1 occ:1.00 O2A H:GTP1001 2.1 96.5 1.0 O3A H:GTP1001 2.2 97.1 1.0 PA H:GTP1001 2.5 98.9 1.0 OG1 H:THR45 3.0 98.5 1.0 PB H:GTP1001 3.0 94.8 1.0 O1B H:GTP1001 3.1 95.6 1.0 C5' H:GTP1001 3.1 98.2 1.0 O5' H:GTP1001 3.1 98.4 1.0 OG1 H:THR32 3.4 78.3 1.0 OG1 H:THR31 3.6 74.1 1.0 CB H:THR31 3.6 74.0 1.0 CB H:THR45 3.6 97.9 1.0 O2B H:GTP1001 3.6 95.7 1.0 N H:THR31 3.9 73.6 1.0 O1A H:GTP1001 4.0 97.9 1.0 N H:THR32 4.0 77.0 1.0 CA H:THR31 4.2 73.6 1.0 CG2 H:THR45 4.2 97.2 1.0 C4' H:GTP1001 4.4 98.1 1.0 O3B H:GTP1001 4.4 96.2 1.0 N H:LYS30 4.5 73.1 1.0 N H:GLY29 4.5 79.3 1.0 C H:THR31 4.5 74.2 1.0 O4' H:GTP1001 4.6 97.5 1.0 C H:GLY29 4.7 78.0 1.0 CA H:GLY29 4.7 78.1 1.0 CB H:THR32 4.7 77.6 1.0 O3G H:GTP1001 4.7 97.5 1.0 CG2 H:THR31 4.9 73.7 1.0 O2G H:GTP1001 4.9 95.7 1.0 O H:THR45 4.9 98.2 1.0 C3' H:GTP1001 4.9 97.6 1.0 CA H:THR32 4.9 76.6 1.0 PG H:GTP1001 4.9 96.4 1.0 O H:ILE46 5.0 88.8 1.0 CA H:THR45 5.0 98.4 1.0

Y.Liu, P.Xu, S.Rivara, C.Liu, J.Ricci, X.Ren, J.H.Hurley, A.Ablasser. Clathrin-Associated Ap-1 Controls Termination of Sting Signalling. Nature V. 610 761 2022.
ISSN: ESSN 1476-4687
PubMed: 36261523
DOI: 10.1038/S41586-022-05354-0