Magnesium in PDB 7rb8: Cryo-Em Structure of the Adp State Wild Type Myosin-15-F-Actin Complex

The binding sites of Magnesium atom in the Cryo-Em Structure of the Adp State Wild Type Myosin-15-F-Actin Complex (pdb code 7rb8). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 4 binding sites of Magnesium where determined in the Cryo-Em Structure of the Adp State Wild Type Myosin-15-F-Actin Complex, PDB code: 7rb8:
Jump to Magnesium binding site number: 1; 2; 3; 4;

Magnesium binding site 1 out of 4 in the Cryo-Em Structure of the Adp State Wild Type Myosin-15-F-Actin Complex


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Cryo-Em Structure of the Adp State Wild Type Myosin-15-F-Actin Complex within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg402 b:37.2 occ:1.00 O3B A:ADP401 2.2 43.3 1.0 PB A:ADP401 3.6 43.3 1.0 O2A A:ADP401 3.7 43.3 1.0 O2B A:ADP401 4.0 43.3 1.0 OD1 A:ASP154 4.1 38.1 1.0 NE2 A:GLN137 4.2 38.0 1.0 OD2 A:ASP154 4.4 38.1 1.0 CA A:GLY156 4.4 38.7 1.0 CA A:GLY301 4.4 39.4 1.0 OD2 A:ASP11 4.5 44.5 1.0 O3A A:ADP401 4.5 43.3 1.0 O1B A:ADP401 4.6 43.3 1.0 NZ A:LYS18 4.6 39.3 1.0 PA A:ADP401 4.6 43.3 1.0 CG A:ASP154 4.7 38.1 1.0 CG2 A:VAL339 4.8 41.1 1.0 CD A:GLN137 4.8 38.0 1.0 N A:GLY156 4.8 38.7 1.0

Magnesium binding site 2 out of 4 in the Cryo-Em Structure of the Adp State Wild Type Myosin-15-F-Actin Complex


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Cryo-Em Structure of the Adp State Wild Type Myosin-15-F-Actin Complex within 5.0Å range: probe atom residue distance (Å) B Occ D:Mg1902 b:83.2 occ:1.00 O1B D:ADP1901 2.4 156.1 1.0 NZ D:LYS1305 2.5 150.2 1.0 CE D:LYS1305 2.9 150.2 1.0 OG1 D:THR1306 3.0 153.6 1.0 PB D:ADP1901 3.3 156.1 1.0 O2B D:ADP1901 3.5 156.1 1.0 CG D:LYS1305 3.9 150.2 1.0 CD D:LYS1305 4.0 150.2 1.0 O3B D:ADP1901 4.0 156.1 1.0 CB D:SER1353 4.2 125.5 1.0 OD2 D:ASP1572 4.3 136.1 1.0 CB D:THR1306 4.4 153.6 1.0 ND2 D:ASN1351 4.5 127.8 1.0 OE2 D:GLU1339 4.6 135.0 1.0 O3A D:ADP1901 4.7 156.1 1.0 N D:SER1353 4.8 125.5 1.0 N D:THR1306 4.8 153.6 1.0 ND2 D:ASN1343 4.8 127.8 1.0 OD1 D:ASN1343 4.9 127.8 1.0 CA D:SER1353 5.0 125.5 1.0

Magnesium binding site 3 out of 4 in the Cryo-Em Structure of the Adp State Wild Type Myosin-15-F-Actin Complex


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of Cryo-Em Structure of the Adp State Wild Type Myosin-15-F-Actin Complex within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg402 b:37.2 occ:1.00 O3B B:ADP401 2.2 43.3 1.0 PB B:ADP401 3.6 43.3 1.0 O2A B:ADP401 3.7 43.3 1.0 O2B B:ADP401 4.0 43.3 1.0 OD1 B:ASP154 4.1 38.1 1.0 NE2 B:GLN137 4.2 38.0 1.0 OD2 B:ASP154 4.4 38.1 1.0 CA B:GLY156 4.4 38.7 1.0 CA B:GLY301 4.4 39.4 1.0 OD2 B:ASP11 4.5 44.5 1.0 O3A B:ADP401 4.5 43.3 1.0 O1B B:ADP401 4.6 43.3 1.0 PA B:ADP401 4.6 43.3 1.0 NZ B:LYS18 4.6 39.3 1.0 CG B:ASP154 4.7 38.1 1.0 CG2 B:VAL339 4.8 41.1 1.0 CD B:GLN137 4.8 38.0 1.0 N B:GLY156 4.8 38.7 1.0

Magnesium binding site 4 out of 4 in the Cryo-Em Structure of the Adp State Wild Type Myosin-15-F-Actin Complex


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 4 of Cryo-Em Structure of the Adp State Wild Type Myosin-15-F-Actin Complex within 5.0Å range: probe atom residue distance (Å) B Occ C:Mg402 b:37.2 occ:1.00 O3B C:ADP401 2.2 43.3 1.0 PB C:ADP401 3.6 43.3 1.0 O2A C:ADP401 3.7 43.3 1.0 O2B C:ADP401 4.0 43.3 1.0 OD1 C:ASP154 4.1 38.1 1.0 NE2 C:GLN137 4.2 38.0 1.0 OD2 C:ASP154 4.4 38.1 1.0 CA C:GLY156 4.4 38.7 1.0 CA C:GLY301 4.4 39.4 1.0 OD2 C:ASP11 4.5 44.5 1.0 O3A C:ADP401 4.5 43.3 1.0 O1B C:ADP401 4.6 43.3 1.0 NZ C:LYS18 4.6 39.3 1.0 PA C:ADP401 4.6 43.3 1.0 CG C:ASP154 4.7 38.1 1.0 CG2 C:VAL339 4.8 41.1 1.0 CD C:GLN137 4.8 38.0 1.0 N C:GLY156 4.8 38.7 1.0

R.Gong, F.Jiang, Z.G.Moreland, M.J.Reynolds, P.S.Gurel, A.Shams, M.R.Bowl, J.E.Bird, G.M.Alushin. Structural Basis For Tunable Control of Actin Dynamics By Myosin-15 in Mechanosensory Stereocilia Biorxiv 2021.
DOI: 10.1101/2021.07.09.451843