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Magnesium in PDB 7rb9: Cryo-Em Structure of the Rigor State Jordan Myosin-15-F-Actin Complex

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Cryo-Em Structure of the Rigor State Jordan Myosin-15-F-Actin Complex (pdb code 7rb9). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 3 binding sites of Magnesium where determined in the Cryo-Em Structure of the Rigor State Jordan Myosin-15-F-Actin Complex, PDB code: 7rb9:
Jump to Magnesium binding site number: 1; 2; 3;

Magnesium binding site 1 out of 3 in 7rb9

Go back to Magnesium Binding Sites List in 7rb9
Magnesium binding site 1 out of 3 in the Cryo-Em Structure of the Rigor State Jordan Myosin-15-F-Actin Complex


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Cryo-Em Structure of the Rigor State Jordan Myosin-15-F-Actin Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mg402

b:74.0
occ:1.00
OE1 B:GLN137 2.2 69.7 1.0
O2B B:ADP401 2.3 77.5 1.0
OD2 B:ASP154 2.4 65.7 1.0
CD B:GLN137 3.1 69.7 1.0
CG B:ASP154 3.4 65.7 1.0
NE2 B:GLN137 3.6 69.7 1.0
PB B:ADP401 3.7 77.5 1.0
OD1 B:ASP154 3.8 65.7 1.0
CG B:GLN137 4.2 69.7 1.0
CB B:GLN137 4.2 69.7 1.0
CG2 B:VAL339 4.2 67.1 1.0
O3B B:ADP401 4.3 77.5 1.0
O3A B:ADP401 4.5 77.5 1.0
N B:GLY156 4.6 65.9 1.0
CA B:GLY156 4.6 65.9 1.0
CB B:ASP154 4.7 65.7 1.0
O1B B:ADP401 4.8 77.5 1.0
CE1 B:HIS161 4.8 56.9 1.0

Magnesium binding site 2 out of 3 in 7rb9

Go back to Magnesium Binding Sites List in 7rb9
Magnesium binding site 2 out of 3 in the Cryo-Em Structure of the Rigor State Jordan Myosin-15-F-Actin Complex


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Cryo-Em Structure of the Rigor State Jordan Myosin-15-F-Actin Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg402

b:74.0
occ:1.00
O2B A:ADP401 2.2 77.5 1.0
OD2 A:ASP154 2.3 65.7 1.0
OE1 A:GLN137 2.4 69.7 1.0
CD A:GLN137 3.3 69.7 1.0
CG A:ASP154 3.4 65.7 1.0
PB A:ADP401 3.7 77.5 1.0
OD1 A:ASP154 3.7 65.7 1.0
NE2 A:GLN137 3.8 69.7 1.0
O3B A:ADP401 4.3 77.5 1.0
CG2 A:VAL339 4.3 67.1 1.0
CB A:GLN137 4.4 69.7 1.0
O3A A:ADP401 4.4 77.5 1.0
CG A:GLN137 4.4 69.7 1.0
N A:GLY156 4.4 65.9 1.0
CA A:GLY156 4.4 65.9 1.0
CB A:ASP154 4.7 65.7 1.0
O1B A:ADP401 4.7 77.5 1.0
CE1 A:HIS161 4.8 56.9 1.0

Magnesium binding site 3 out of 3 in 7rb9

Go back to Magnesium Binding Sites List in 7rb9
Magnesium binding site 3 out of 3 in the Cryo-Em Structure of the Rigor State Jordan Myosin-15-F-Actin Complex


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of Cryo-Em Structure of the Rigor State Jordan Myosin-15-F-Actin Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Mg402

b:74.0
occ:1.00
O2B C:ADP401 2.4 77.5 1.0
OE1 C:GLN137 2.5 69.7 1.0
OD2 C:ASP154 2.5 65.7 1.0
OD1 C:ASP154 2.9 65.7 1.0
CG C:ASP154 3.0 65.7 1.0
CD C:GLN137 3.5 69.7 1.0
PB C:ADP401 3.9 77.5 1.0
NE2 C:GLN137 4.1 69.7 1.0
N C:GLY156 4.2 65.9 1.0
CA C:GLY156 4.3 65.9 1.0
CB C:ASP154 4.4 65.7 1.0
CB C:GLN137 4.4 69.7 1.0
CG2 C:VAL339 4.5 67.1 1.0
O3A C:ADP401 4.5 77.5 1.0
CG C:GLN137 4.5 69.7 1.0
CE1 C:HIS161 4.5 56.9 1.0
O3B C:ADP401 4.6 77.5 1.0
O1B C:ADP401 4.9 77.5 1.0
C C:SER155 4.9 63.2 1.0
N C:SER155 5.0 63.2 1.0

Reference:

R.Gong, F.Jiang, Z.G.Moreland, M.J.Reynolds, P.S.Gurel, A.Shams, M.R.Bowl, J.E.Bird, G.M.Alushin. Structural Basis For Tunable Control of Actin Dynamics By Myosin-15 in Mechanosensory Stereocilia Biorxiv 2021.
DOI: 10.1101/2021.07.09.451843
Page generated: Thu Oct 3 07:45:10 2024

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