Magnesium in PDB 7rcv: High-Resolution Structure of Photosystem II From the Mesophilic Cyanobacterium, Synechocystis Sp. Pcc 6803
Enzymatic activity of High-Resolution Structure of Photosystem II From the Mesophilic Cyanobacterium, Synechocystis Sp. Pcc 6803
All present enzymatic activity of High-Resolution Structure of Photosystem II From the Mesophilic Cyanobacterium, Synechocystis Sp. Pcc 6803:
1.10.3.9;
Other elements in 7rcv:
The structure of High-Resolution Structure of Photosystem II From the Mesophilic Cyanobacterium, Synechocystis Sp. Pcc 6803 also contains other interesting chemical elements:
Magnesium Binding Sites:
Magnesium binding site 1 out
of 70 in 7rcv
Go back to
Magnesium Binding Sites List in 7rcv
Magnesium binding site 1 out
of 70 in the High-Resolution Structure of Photosystem II From the Mesophilic Cyanobacterium, Synechocystis Sp. Pcc 6803
![](/pictures/MG/pdb/rc/7rcv-MG-sphere_01.jpg) Mono view
![](/pictures/MG/pdb/rc/7rcv-MG-sphere_01_stereo.jpg) Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 1 of High-Resolution Structure of Photosystem II From the Mesophilic Cyanobacterium, Synechocystis Sp. Pcc 6803 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Mg405
b:2.8
occ:1.00
|
MG
|
A:CLA405
|
0.0
|
2.8
|
1.0
|
ND
|
A:CLA405
|
2.0
|
2.8
|
1.0
|
NB
|
A:CLA405
|
2.1
|
2.8
|
1.0
|
NC
|
A:CLA405
|
2.1
|
2.8
|
1.0
|
NA
|
A:CLA405
|
2.2
|
2.8
|
1.0
|
NE2
|
A:HIS198
|
2.8
|
6.8
|
1.0
|
C4D
|
A:CLA405
|
2.9
|
2.8
|
1.0
|
C4B
|
A:CLA405
|
3.0
|
2.8
|
1.0
|
C1B
|
A:CLA405
|
3.1
|
2.8
|
1.0
|
C1C
|
A:CLA405
|
3.1
|
2.8
|
1.0
|
C1D
|
A:CLA405
|
3.1
|
2.8
|
1.0
|
C4A
|
A:CLA405
|
3.1
|
2.8
|
1.0
|
C1A
|
A:CLA405
|
3.1
|
2.8
|
1.0
|
C4C
|
A:CLA405
|
3.1
|
2.8
|
1.0
|
CHC
|
A:CLA405
|
3.4
|
2.8
|
1.0
|
CHB
|
A:CLA405
|
3.4
|
2.8
|
1.0
|
CHA
|
A:CLA405
|
3.5
|
2.8
|
1.0
|
CHD
|
A:CLA405
|
3.6
|
2.8
|
1.0
|
CD2
|
A:HIS198
|
3.6
|
6.8
|
1.0
|
CE1
|
A:HIS198
|
3.7
|
6.8
|
1.0
|
CE
|
A:MET183
|
3.9
|
10.5
|
1.0
|
C3D
|
A:CLA405
|
4.2
|
2.8
|
1.0
|
CAB
|
D:CLA403
|
4.2
|
1.8
|
1.0
|
C3B
|
A:CLA405
|
4.3
|
2.8
|
1.0
|
C2B
|
A:CLA405
|
4.4
|
2.8
|
1.0
|
C2D
|
A:CLA405
|
4.4
|
2.8
|
1.0
|
C2C
|
A:CLA405
|
4.4
|
2.8
|
1.0
|
C3C
|
A:CLA405
|
4.4
|
2.8
|
1.0
|
C3A
|
A:CLA405
|
4.5
|
2.8
|
1.0
|
C2A
|
A:CLA405
|
4.5
|
2.8
|
1.0
|
CG
|
A:HIS198
|
4.8
|
6.8
|
1.0
|
ND1
|
A:HIS198
|
4.9
|
6.8
|
1.0
|
CHC
|
D:CLA403
|
4.9
|
1.8
|
1.0
|
CBB
|
D:CLA403
|
4.9
|
1.8
|
1.0
|
CBD
|
A:CLA405
|
4.9
|
2.8
|
1.0
|
|
Magnesium binding site 2 out
of 70 in 7rcv
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Magnesium Binding Sites List in 7rcv
Magnesium binding site 2 out
of 70 in the High-Resolution Structure of Photosystem II From the Mesophilic Cyanobacterium, Synechocystis Sp. Pcc 6803
![](/pictures/MG/pdb/rc/7rcv-MG-sphere_02.jpg) Mono view
![](/pictures/MG/pdb/rc/7rcv-MG-sphere_02_stereo.jpg) Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 2 of High-Resolution Structure of Photosystem II From the Mesophilic Cyanobacterium, Synechocystis Sp. Pcc 6803 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Mg406
b:1.9
occ:1.00
|
MG
|
A:CLA406
|
0.0
|
1.9
|
1.0
|
ND
|
A:CLA406
|
2.0
|
1.9
|
1.0
|
NB
|
A:CLA406
|
2.1
|
1.9
|
1.0
|
NC
|
A:CLA406
|
2.1
|
1.9
|
1.0
|
NA
|
A:CLA406
|
2.2
|
1.9
|
1.0
|
O
|
A:HOH609
|
2.9
|
4.3
|
1.0
|
C4D
|
A:CLA406
|
2.9
|
1.9
|
1.0
|
C4B
|
A:CLA406
|
3.0
|
1.9
|
1.0
|
C1C
|
A:CLA406
|
3.1
|
1.9
|
1.0
|
C1B
|
A:CLA406
|
3.1
|
1.9
|
1.0
|
C1D
|
A:CLA406
|
3.1
|
1.9
|
1.0
|
C4A
|
A:CLA406
|
3.1
|
1.9
|
1.0
|
C4C
|
A:CLA406
|
3.2
|
1.9
|
1.0
|
C1A
|
A:CLA406
|
3.2
|
1.9
|
1.0
|
CHC
|
A:CLA406
|
3.4
|
1.9
|
1.0
|
CHB
|
A:CLA406
|
3.4
|
1.9
|
1.0
|
CHA
|
A:CLA406
|
3.5
|
1.9
|
1.0
|
CHD
|
A:CLA406
|
3.5
|
1.9
|
1.0
|
CBB
|
D:PHO402
|
3.8
|
3.6
|
1.0
|
C3D
|
A:CLA406
|
4.1
|
1.9
|
1.0
|
C3B
|
A:CLA406
|
4.3
|
1.9
|
1.0
|
C2D
|
A:CLA406
|
4.4
|
1.9
|
1.0
|
C2B
|
A:CLA406
|
4.4
|
1.9
|
1.0
|
C2C
|
A:CLA406
|
4.4
|
1.9
|
1.0
|
C3C
|
A:CLA406
|
4.4
|
1.9
|
1.0
|
O
|
D:HOH598
|
4.5
|
3.5
|
1.0
|
C3A
|
A:CLA406
|
4.5
|
1.9
|
1.0
|
C2A
|
A:CLA406
|
4.5
|
1.9
|
1.0
|
CE2
|
A:PHE206
|
4.5
|
10.5
|
1.0
|
CG2
|
D:ILE178
|
4.7
|
2.5
|
1.0
|
CBA
|
A:CLA406
|
4.7
|
1.9
|
1.0
|
CBD
|
A:CLA406
|
4.9
|
1.9
|
1.0
|
|
Magnesium binding site 3 out
of 70 in 7rcv
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Magnesium Binding Sites List in 7rcv
Magnesium binding site 3 out
of 70 in the High-Resolution Structure of Photosystem II From the Mesophilic Cyanobacterium, Synechocystis Sp. Pcc 6803
![](/pictures/MG/pdb/rc/7rcv-MG-sphere_03.jpg) Mono view
![](/pictures/MG/pdb/rc/7rcv-MG-sphere_03_stereo.jpg) Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 3 of High-Resolution Structure of Photosystem II From the Mesophilic Cyanobacterium, Synechocystis Sp. Pcc 6803 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Mg408
b:6.6
occ:1.00
|
MG
|
A:CLA408
|
0.0
|
6.6
|
1.0
|
ND
|
A:CLA408
|
2.0
|
6.6
|
1.0
|
NB
|
A:CLA408
|
2.1
|
6.6
|
1.0
|
NC
|
A:CLA408
|
2.1
|
6.6
|
1.0
|
NA
|
A:CLA408
|
2.2
|
6.6
|
1.0
|
NE2
|
A:HIS118
|
2.7
|
4.0
|
1.0
|
C4D
|
A:CLA408
|
2.9
|
6.6
|
1.0
|
C4B
|
A:CLA408
|
3.0
|
6.6
|
1.0
|
C1B
|
A:CLA408
|
3.1
|
6.6
|
1.0
|
C1C
|
A:CLA408
|
3.1
|
6.6
|
1.0
|
C1D
|
A:CLA408
|
3.1
|
6.6
|
1.0
|
C1A
|
A:CLA408
|
3.2
|
6.6
|
1.0
|
C4A
|
A:CLA408
|
3.2
|
6.6
|
1.0
|
C4C
|
A:CLA408
|
3.2
|
6.6
|
1.0
|
CHC
|
A:CLA408
|
3.4
|
6.6
|
1.0
|
CHB
|
A:CLA408
|
3.4
|
6.6
|
1.0
|
CHA
|
A:CLA408
|
3.5
|
6.6
|
1.0
|
CHD
|
A:CLA408
|
3.5
|
6.6
|
1.0
|
CD2
|
A:HIS118
|
3.6
|
4.0
|
1.0
|
CE1
|
A:HIS118
|
3.7
|
4.0
|
1.0
|
CG2
|
I:VAL12
|
3.9
|
9.6
|
1.0
|
C3D
|
A:CLA408
|
4.1
|
6.6
|
1.0
|
CG1
|
I:VAL8
|
4.3
|
9.4
|
1.0
|
C3B
|
A:CLA408
|
4.3
|
6.6
|
1.0
|
C2D
|
A:CLA408
|
4.4
|
6.6
|
1.0
|
C2B
|
A:CLA408
|
4.4
|
6.6
|
1.0
|
C2C
|
A:CLA408
|
4.4
|
6.6
|
1.0
|
C3C
|
A:CLA408
|
4.4
|
6.6
|
1.0
|
C3A
|
A:CLA408
|
4.5
|
6.6
|
1.0
|
C2A
|
A:CLA408
|
4.5
|
6.6
|
1.0
|
CG
|
A:HIS118
|
4.8
|
4.0
|
1.0
|
ND1
|
A:HIS118
|
4.8
|
4.0
|
1.0
|
CBA
|
A:CLA408
|
4.8
|
6.6
|
1.0
|
CBD
|
A:CLA408
|
4.9
|
6.6
|
1.0
|
|
Magnesium binding site 4 out
of 70 in 7rcv
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Magnesium Binding Sites List in 7rcv
Magnesium binding site 4 out
of 70 in the High-Resolution Structure of Photosystem II From the Mesophilic Cyanobacterium, Synechocystis Sp. Pcc 6803
![](/pictures/MG/pdb/rc/7rcv-MG-sphere_04.jpg) Mono view
![](/pictures/MG/pdb/rc/7rcv-MG-sphere_04_stereo.jpg) Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 4 of High-Resolution Structure of Photosystem II From the Mesophilic Cyanobacterium, Synechocystis Sp. Pcc 6803 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Mg601
b:16.2
occ:1.00
|
MG
|
B:CLA601
|
0.0
|
16.2
|
1.0
|
ND
|
B:CLA601
|
2.0
|
16.2
|
1.0
|
NB
|
B:CLA601
|
2.1
|
16.2
|
1.0
|
NC
|
B:CLA601
|
2.1
|
16.2
|
1.0
|
NA
|
B:CLA601
|
2.2
|
16.2
|
1.0
|
O
|
B:HOH703
|
2.9
|
12.7
|
1.0
|
C4D
|
B:CLA601
|
2.9
|
16.2
|
1.0
|
C4B
|
B:CLA601
|
3.0
|
16.2
|
1.0
|
C1B
|
B:CLA601
|
3.1
|
16.2
|
1.0
|
C1C
|
B:CLA601
|
3.1
|
16.2
|
1.0
|
C1D
|
B:CLA601
|
3.1
|
16.2
|
1.0
|
C4C
|
B:CLA601
|
3.2
|
16.2
|
1.0
|
C4A
|
B:CLA601
|
3.2
|
16.2
|
1.0
|
C1A
|
B:CLA601
|
3.2
|
16.2
|
1.0
|
CHC
|
B:CLA601
|
3.4
|
16.2
|
1.0
|
CHB
|
B:CLA601
|
3.4
|
16.2
|
1.0
|
CHA
|
B:CLA601
|
3.5
|
16.2
|
1.0
|
CHD
|
B:CLA601
|
3.6
|
16.2
|
1.0
|
C6
|
H:LMT101
|
3.6
|
25.5
|
1.0
|
C7
|
H:LMT101
|
3.9
|
25.5
|
1.0
|
C8
|
H:LMT101
|
4.1
|
25.5
|
1.0
|
C3D
|
B:CLA601
|
4.2
|
16.2
|
1.0
|
C5
|
H:LMT101
|
4.2
|
25.5
|
1.0
|
O
|
B:TRP185
|
4.3
|
15.1
|
1.0
|
C3B
|
B:CLA601
|
4.3
|
16.2
|
1.0
|
C2D
|
B:CLA601
|
4.4
|
16.2
|
1.0
|
C2B
|
B:CLA601
|
4.4
|
16.2
|
1.0
|
C2C
|
B:CLA601
|
4.4
|
16.2
|
1.0
|
C3C
|
B:CLA601
|
4.4
|
16.2
|
1.0
|
C4
|
H:LMT101
|
4.5
|
25.5
|
1.0
|
C3A
|
B:CLA601
|
4.5
|
16.2
|
1.0
|
C2A
|
B:CLA601
|
4.5
|
16.2
|
1.0
|
CE2
|
B:PHE190
|
4.8
|
8.9
|
1.0
|
CBB
|
B:CLA602
|
5.0
|
6.2
|
1.0
|
CBD
|
B:CLA601
|
5.0
|
16.2
|
1.0
|
CBA
|
B:CLA601
|
5.0
|
16.2
|
1.0
|
|
Magnesium binding site 5 out
of 70 in 7rcv
Go back to
Magnesium Binding Sites List in 7rcv
Magnesium binding site 5 out
of 70 in the High-Resolution Structure of Photosystem II From the Mesophilic Cyanobacterium, Synechocystis Sp. Pcc 6803
![](/pictures/MG/pdb/rc/7rcv-MG-sphere_05.jpg) Mono view
![](/pictures/MG/pdb/rc/7rcv-MG-sphere_05_stereo.jpg) Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 5 of High-Resolution Structure of Photosystem II From the Mesophilic Cyanobacterium, Synechocystis Sp. Pcc 6803 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Mg602
b:6.2
occ:1.00
|
MG
|
B:CLA602
|
0.0
|
6.2
|
1.0
|
ND
|
B:CLA602
|
2.0
|
6.2
|
1.0
|
NB
|
B:CLA602
|
2.1
|
6.2
|
1.0
|
NC
|
B:CLA602
|
2.1
|
6.2
|
1.0
|
NA
|
B:CLA602
|
2.2
|
6.2
|
1.0
|
CD2
|
B:HIS201
|
2.9
|
4.1
|
1.0
|
C4D
|
B:CLA602
|
2.9
|
6.2
|
1.0
|
C4B
|
B:CLA602
|
3.0
|
6.2
|
1.0
|
C1B
|
B:CLA602
|
3.1
|
6.2
|
1.0
|
C1C
|
B:CLA602
|
3.1
|
6.2
|
1.0
|
C1D
|
B:CLA602
|
3.1
|
6.2
|
1.0
|
C4C
|
B:CLA602
|
3.2
|
6.2
|
1.0
|
C4A
|
B:CLA602
|
3.2
|
6.2
|
1.0
|
C1A
|
B:CLA602
|
3.2
|
6.2
|
1.0
|
CZ
|
H:PHE41
|
3.3
|
8.9
|
1.0
|
CHC
|
B:CLA602
|
3.4
|
6.2
|
1.0
|
CHB
|
B:CLA602
|
3.5
|
6.2
|
1.0
|
CHA
|
B:CLA602
|
3.5
|
6.2
|
1.0
|
CHD
|
B:CLA602
|
3.5
|
6.2
|
1.0
|
CG
|
B:HIS201
|
3.8
|
4.1
|
1.0
|
NE2
|
B:HIS201
|
3.9
|
4.1
|
1.0
|
CE2
|
H:PHE41
|
3.9
|
8.9
|
1.0
|
CB
|
B:HIS201
|
4.1
|
4.1
|
1.0
|
C3D
|
B:CLA602
|
4.1
|
6.2
|
1.0
|
C3B
|
B:CLA602
|
4.3
|
6.2
|
1.0
|
C2D
|
B:CLA602
|
4.4
|
6.2
|
1.0
|
C2B
|
B:CLA602
|
4.4
|
6.2
|
1.0
|
CE1
|
H:PHE41
|
4.4
|
8.9
|
1.0
|
C2C
|
B:CLA602
|
4.4
|
6.2
|
1.0
|
C3C
|
B:CLA602
|
4.4
|
6.2
|
1.0
|
C3A
|
B:CLA602
|
4.5
|
6.2
|
1.0
|
C2A
|
B:CLA602
|
4.5
|
6.2
|
1.0
|
CE1
|
B:PHE190
|
4.6
|
8.9
|
1.0
|
CA
|
B:HIS201
|
4.8
|
4.1
|
1.0
|
CBD
|
B:CLA602
|
4.9
|
6.2
|
1.0
|
ND1
|
B:HIS201
|
5.0
|
4.1
|
1.0
|
CE1
|
B:HIS201
|
5.0
|
4.1
|
1.0
|
|
Magnesium binding site 6 out
of 70 in 7rcv
Go back to
Magnesium Binding Sites List in 7rcv
Magnesium binding site 6 out
of 70 in the High-Resolution Structure of Photosystem II From the Mesophilic Cyanobacterium, Synechocystis Sp. Pcc 6803
![](/pictures/MG/pdb/rc/7rcv-MG-sphere_06.jpg) Mono view
![](/pictures/MG/pdb/rc/7rcv-MG-sphere_06_stereo.jpg) Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 6 of High-Resolution Structure of Photosystem II From the Mesophilic Cyanobacterium, Synechocystis Sp. Pcc 6803 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Mg603
b:2.8
occ:1.00
|
MG
|
B:CLA603
|
0.0
|
2.8
|
1.0
|
ND
|
B:CLA603
|
2.0
|
2.8
|
1.0
|
NB
|
B:CLA603
|
2.1
|
2.8
|
1.0
|
NC
|
B:CLA603
|
2.1
|
2.8
|
1.0
|
NA
|
B:CLA603
|
2.2
|
2.8
|
1.0
|
NE2
|
B:HIS202
|
2.8
|
3.8
|
1.0
|
C4D
|
B:CLA603
|
2.9
|
2.8
|
1.0
|
C4B
|
B:CLA603
|
3.0
|
2.8
|
1.0
|
C1B
|
B:CLA603
|
3.1
|
2.8
|
1.0
|
C1C
|
B:CLA603
|
3.1
|
2.8
|
1.0
|
C1D
|
B:CLA603
|
3.1
|
2.8
|
1.0
|
C4C
|
B:CLA603
|
3.1
|
2.8
|
1.0
|
C4A
|
B:CLA603
|
3.2
|
2.8
|
1.0
|
C1A
|
B:CLA603
|
3.2
|
2.8
|
1.0
|
CHC
|
B:CLA603
|
3.4
|
2.8
|
1.0
|
CHB
|
B:CLA603
|
3.4
|
2.8
|
1.0
|
CHA
|
B:CLA603
|
3.5
|
2.8
|
1.0
|
CHD
|
B:CLA603
|
3.5
|
2.8
|
1.0
|
CD2
|
B:HIS202
|
3.6
|
3.8
|
1.0
|
C9
|
B:CLA605
|
3.8
|
4.6
|
1.0
|
CE1
|
B:HIS202
|
3.9
|
3.8
|
1.0
|
C3D
|
B:CLA603
|
4.1
|
2.8
|
1.0
|
C6
|
B:CLA605
|
4.3
|
4.6
|
1.0
|
C3B
|
B:CLA603
|
4.3
|
2.8
|
1.0
|
C2D
|
B:CLA603
|
4.3
|
2.8
|
1.0
|
C2B
|
B:CLA603
|
4.4
|
2.8
|
1.0
|
C2C
|
B:CLA603
|
4.4
|
2.8
|
1.0
|
C3C
|
B:CLA603
|
4.4
|
2.8
|
1.0
|
C5
|
B:CLA605
|
4.4
|
4.6
|
1.0
|
C4
|
B:CLA605
|
4.5
|
4.6
|
1.0
|
C3A
|
B:CLA603
|
4.5
|
2.8
|
1.0
|
C2A
|
B:CLA603
|
4.5
|
2.8
|
1.0
|
C7
|
B:CLA605
|
4.6
|
4.6
|
1.0
|
CE1
|
B:HIS201
|
4.7
|
4.1
|
1.0
|
C8
|
B:CLA605
|
4.8
|
4.6
|
1.0
|
C3
|
B:CLA605
|
4.8
|
4.6
|
1.0
|
CG
|
B:HIS202
|
4.8
|
3.8
|
1.0
|
ND1
|
B:HIS202
|
4.9
|
3.8
|
1.0
|
CBA
|
B:CLA603
|
4.9
|
2.8
|
1.0
|
CBD
|
B:CLA603
|
5.0
|
2.8
|
1.0
|
|
Magnesium binding site 7 out
of 70 in 7rcv
Go back to
Magnesium Binding Sites List in 7rcv
Magnesium binding site 7 out
of 70 in the High-Resolution Structure of Photosystem II From the Mesophilic Cyanobacterium, Synechocystis Sp. Pcc 6803
![](/pictures/MG/pdb/rc/7rcv-MG-sphere_07.jpg) Mono view
![](/pictures/MG/pdb/rc/7rcv-MG-sphere_07_stereo.jpg) Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 7 of High-Resolution Structure of Photosystem II From the Mesophilic Cyanobacterium, Synechocystis Sp. Pcc 6803 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Mg604
b:10.5
occ:1.00
|
MG
|
B:CLA604
|
0.0
|
10.5
|
1.0
|
ND
|
B:CLA604
|
2.0
|
10.5
|
1.0
|
NB
|
B:CLA604
|
2.1
|
10.5
|
1.0
|
NC
|
B:CLA604
|
2.1
|
10.5
|
1.0
|
NA
|
B:CLA604
|
2.2
|
10.5
|
1.0
|
NE2
|
B:HIS455
|
2.7
|
3.4
|
1.0
|
C4D
|
B:CLA604
|
2.9
|
10.5
|
1.0
|
C4B
|
B:CLA604
|
3.0
|
10.5
|
1.0
|
C1B
|
B:CLA604
|
3.1
|
10.5
|
1.0
|
C1C
|
B:CLA604
|
3.1
|
10.5
|
1.0
|
C1D
|
B:CLA604
|
3.1
|
10.5
|
1.0
|
C4A
|
B:CLA604
|
3.2
|
10.5
|
1.0
|
C4C
|
B:CLA604
|
3.2
|
10.5
|
1.0
|
C1A
|
B:CLA604
|
3.2
|
10.5
|
1.0
|
CHC
|
B:CLA604
|
3.4
|
10.5
|
1.0
|
CHB
|
B:CLA604
|
3.4
|
10.5
|
1.0
|
CHA
|
B:CLA604
|
3.5
|
10.5
|
1.0
|
C14
|
B:CLA612
|
3.5
|
4.7
|
1.0
|
CHD
|
B:CLA604
|
3.6
|
10.5
|
1.0
|
CD2
|
B:HIS455
|
3.6
|
3.4
|
1.0
|
CE1
|
B:HIS455
|
3.7
|
3.4
|
1.0
|
C3D
|
B:CLA604
|
4.1
|
10.5
|
1.0
|
C13
|
B:CLA612
|
4.3
|
4.7
|
1.0
|
C3B
|
B:CLA604
|
4.3
|
10.5
|
1.0
|
C2D
|
B:CLA604
|
4.4
|
10.5
|
1.0
|
C2B
|
B:CLA604
|
4.4
|
10.5
|
1.0
|
C2C
|
B:CLA604
|
4.4
|
10.5
|
1.0
|
C3C
|
B:CLA604
|
4.5
|
10.5
|
1.0
|
C15
|
B:CLA612
|
4.5
|
4.7
|
1.0
|
C3A
|
B:CLA604
|
4.5
|
10.5
|
1.0
|
C2A
|
B:CLA604
|
4.5
|
10.5
|
1.0
|
CG
|
B:HIS455
|
4.7
|
3.4
|
1.0
|
ND1
|
B:HIS455
|
4.8
|
3.4
|
1.0
|
CAB
|
B:CLA613
|
4.8
|
10.5
|
1.0
|
CBD
|
B:CLA604
|
4.9
|
10.5
|
1.0
|
|
Magnesium binding site 8 out
of 70 in 7rcv
Go back to
Magnesium Binding Sites List in 7rcv
Magnesium binding site 8 out
of 70 in the High-Resolution Structure of Photosystem II From the Mesophilic Cyanobacterium, Synechocystis Sp. Pcc 6803
![](/pictures/MG/pdb/rc/7rcv-MG-sphere_08.jpg) Mono view
![](/pictures/MG/pdb/rc/7rcv-MG-sphere_08_stereo.jpg) Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 8 of High-Resolution Structure of Photosystem II From the Mesophilic Cyanobacterium, Synechocystis Sp. Pcc 6803 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Mg605
b:4.6
occ:1.00
|
MG
|
B:CLA605
|
0.0
|
4.6
|
1.0
|
ND
|
B:CLA605
|
2.0
|
4.6
|
1.0
|
NB
|
B:CLA605
|
2.1
|
4.6
|
1.0
|
NC
|
B:CLA605
|
2.1
|
4.6
|
1.0
|
NA
|
B:CLA605
|
2.2
|
4.6
|
1.0
|
NE2
|
B:HIS100
|
2.7
|
3.9
|
1.0
|
C4D
|
B:CLA605
|
2.9
|
4.6
|
1.0
|
C4B
|
B:CLA605
|
3.0
|
4.6
|
1.0
|
C1B
|
B:CLA605
|
3.1
|
4.6
|
1.0
|
C1C
|
B:CLA605
|
3.1
|
4.6
|
1.0
|
C1D
|
B:CLA605
|
3.1
|
4.6
|
1.0
|
C4C
|
B:CLA605
|
3.1
|
4.6
|
1.0
|
C1A
|
B:CLA605
|
3.2
|
4.6
|
1.0
|
C4A
|
B:CLA605
|
3.2
|
4.6
|
1.0
|
CHC
|
B:CLA605
|
3.4
|
4.6
|
1.0
|
CHB
|
B:CLA605
|
3.4
|
4.6
|
1.0
|
CHA
|
B:CLA605
|
3.5
|
4.6
|
1.0
|
CHD
|
B:CLA605
|
3.5
|
4.6
|
1.0
|
CD2
|
B:HIS100
|
3.6
|
3.9
|
1.0
|
C2
|
B:CLA604
|
3.7
|
10.5
|
1.0
|
CE1
|
B:HIS100
|
3.8
|
3.9
|
1.0
|
C3D
|
B:CLA605
|
4.2
|
4.6
|
1.0
|
C3B
|
B:CLA605
|
4.3
|
4.6
|
1.0
|
C2D
|
B:CLA605
|
4.4
|
4.6
|
1.0
|
C2B
|
B:CLA605
|
4.4
|
4.6
|
1.0
|
O2A
|
B:CLA604
|
4.4
|
10.5
|
1.0
|
C2C
|
B:CLA605
|
4.4
|
4.6
|
1.0
|
C3C
|
B:CLA605
|
4.4
|
4.6
|
1.0
|
C3A
|
B:CLA605
|
4.5
|
4.6
|
1.0
|
C2A
|
B:CLA605
|
4.5
|
4.6
|
1.0
|
C1
|
B:CLA604
|
4.5
|
10.5
|
1.0
|
C3
|
B:CLA604
|
4.6
|
10.5
|
1.0
|
C5
|
B:CLA604
|
4.7
|
10.5
|
1.0
|
CBA
|
B:CLA605
|
4.8
|
4.6
|
1.0
|
CG
|
B:HIS100
|
4.8
|
3.9
|
1.0
|
ND1
|
B:HIS100
|
4.9
|
3.9
|
1.0
|
CBD
|
B:CLA605
|
4.9
|
4.6
|
1.0
|
|
Magnesium binding site 9 out
of 70 in 7rcv
Go back to
Magnesium Binding Sites List in 7rcv
Magnesium binding site 9 out
of 70 in the High-Resolution Structure of Photosystem II From the Mesophilic Cyanobacterium, Synechocystis Sp. Pcc 6803
![](/pictures/MG/pdb/rc/7rcv-MG-sphere_09.jpg) Mono view
![](/pictures/MG/pdb/rc/7rcv-MG-sphere_09_stereo.jpg) Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 9 of High-Resolution Structure of Photosystem II From the Mesophilic Cyanobacterium, Synechocystis Sp. Pcc 6803 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Mg606
b:8.1
occ:1.00
|
MG
|
B:CLA606
|
0.0
|
8.1
|
1.0
|
ND
|
B:CLA606
|
2.0
|
8.1
|
1.0
|
NB
|
B:CLA606
|
2.1
|
8.1
|
1.0
|
NC
|
B:CLA606
|
2.1
|
8.1
|
1.0
|
NA
|
B:CLA606
|
2.2
|
8.1
|
1.0
|
ND1
|
B:HIS157
|
2.9
|
5.8
|
1.0
|
C4D
|
B:CLA606
|
2.9
|
8.1
|
1.0
|
C4B
|
B:CLA606
|
3.0
|
8.1
|
1.0
|
C1B
|
B:CLA606
|
3.1
|
8.1
|
1.0
|
C1C
|
B:CLA606
|
3.1
|
8.1
|
1.0
|
C1D
|
B:CLA606
|
3.1
|
8.1
|
1.0
|
C4C
|
B:CLA606
|
3.1
|
8.1
|
1.0
|
C4A
|
B:CLA606
|
3.2
|
8.1
|
1.0
|
C1A
|
B:CLA606
|
3.2
|
8.1
|
1.0
|
CHC
|
B:CLA606
|
3.4
|
8.1
|
1.0
|
CHB
|
B:CLA606
|
3.4
|
8.1
|
1.0
|
C7
|
B:LMT624
|
3.5
|
14.7
|
1.0
|
CHA
|
B:CLA606
|
3.5
|
8.1
|
1.0
|
CHD
|
B:CLA606
|
3.5
|
8.1
|
1.0
|
C6
|
B:LMT624
|
3.6
|
14.7
|
1.0
|
C5
|
B:LMT624
|
3.7
|
14.7
|
1.0
|
CE1
|
B:HIS157
|
3.7
|
5.8
|
1.0
|
CG
|
B:HIS157
|
4.0
|
5.8
|
1.0
|
C3D
|
B:CLA606
|
4.2
|
8.1
|
1.0
|
CB
|
B:HIS157
|
4.3
|
5.8
|
1.0
|
C8
|
B:LMT624
|
4.3
|
14.7
|
1.0
|
C3B
|
B:CLA606
|
4.3
|
8.1
|
1.0
|
C2D
|
B:CLA606
|
4.4
|
8.1
|
1.0
|
C2B
|
B:CLA606
|
4.4
|
8.1
|
1.0
|
C2C
|
B:CLA606
|
4.4
|
8.1
|
1.0
|
C3C
|
B:CLA606
|
4.4
|
8.1
|
1.0
|
C3A
|
B:CLA606
|
4.5
|
8.1
|
1.0
|
C2A
|
B:CLA606
|
4.5
|
8.1
|
1.0
|
NE2
|
B:HIS157
|
4.9
|
5.8
|
1.0
|
CBA
|
B:CLA606
|
4.9
|
8.1
|
1.0
|
CBD
|
B:CLA606
|
5.0
|
8.1
|
1.0
|
|
Magnesium binding site 10 out
of 70 in 7rcv
Go back to
Magnesium Binding Sites List in 7rcv
Magnesium binding site 10 out
of 70 in the High-Resolution Structure of Photosystem II From the Mesophilic Cyanobacterium, Synechocystis Sp. Pcc 6803
![](/pictures/MG/pdb/rc/7rcv-MG-sphere_10.jpg) Mono view
![](/pictures/MG/pdb/rc/7rcv-MG-sphere_10_stereo.jpg) Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 10 of High-Resolution Structure of Photosystem II From the Mesophilic Cyanobacterium, Synechocystis Sp. Pcc 6803 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Mg607
b:4.3
occ:1.00
|
MG
|
B:CLA607
|
0.0
|
4.3
|
1.0
|
ND
|
B:CLA607
|
2.0
|
4.3
|
1.0
|
NB
|
B:CLA607
|
2.1
|
4.3
|
1.0
|
NC
|
B:CLA607
|
2.1
|
4.3
|
1.0
|
NA
|
B:CLA607
|
2.2
|
4.3
|
1.0
|
O
|
B:HOH815
|
2.8
|
6.0
|
1.0
|
C4D
|
B:CLA607
|
2.9
|
4.3
|
1.0
|
C4B
|
B:CLA607
|
3.0
|
4.3
|
1.0
|
C1B
|
B:CLA607
|
3.1
|
4.3
|
1.0
|
C1C
|
B:CLA607
|
3.1
|
4.3
|
1.0
|
C1D
|
B:CLA607
|
3.1
|
4.3
|
1.0
|
C4C
|
B:CLA607
|
3.1
|
4.3
|
1.0
|
C1A
|
B:CLA607
|
3.1
|
4.3
|
1.0
|
C4A
|
B:CLA607
|
3.2
|
4.3
|
1.0
|
C12
|
B:LMG621
|
3.2
|
9.4
|
1.0
|
CHC
|
B:CLA607
|
3.4
|
4.3
|
1.0
|
CHB
|
B:CLA607
|
3.4
|
4.3
|
1.0
|
CHA
|
B:CLA607
|
3.5
|
4.3
|
1.0
|
CHD
|
B:CLA607
|
3.5
|
4.3
|
1.0
|
C14
|
B:LMG621
|
3.8
|
9.4
|
1.0
|
C13
|
B:LMG621
|
4.1
|
9.4
|
1.0
|
C3D
|
B:CLA607
|
4.1
|
4.3
|
1.0
|
C15
|
B:LMG621
|
4.2
|
9.4
|
1.0
|
C3B
|
B:CLA607
|
4.3
|
4.3
|
1.0
|
C2D
|
B:CLA607
|
4.4
|
4.3
|
1.0
|
C11
|
B:LMG621
|
4.4
|
9.4
|
1.0
|
C2B
|
B:CLA607
|
4.4
|
4.3
|
1.0
|
C2C
|
B:CLA607
|
4.4
|
4.3
|
1.0
|
C3C
|
B:CLA607
|
4.4
|
4.3
|
1.0
|
C2A
|
B:CLA607
|
4.5
|
4.3
|
1.0
|
C3A
|
B:CLA607
|
4.5
|
4.3
|
1.0
|
O
|
B:HOH763
|
4.5
|
6.8
|
1.0
|
O9
|
B:LMG621
|
4.8
|
9.4
|
1.0
|
SD
|
B:MET37
|
4.8
|
4.6
|
1.0
|
CD2
|
B:PHE61
|
4.8
|
5.2
|
1.0
|
C10
|
B:LMG621
|
4.9
|
9.4
|
1.0
|
CBD
|
B:CLA607
|
4.9
|
4.3
|
1.0
|
|
Reference:
C.J.Gisriel,
J.Wang,
J.Liu,
D.A.Flesher,
K.M.Reiss,
H.Huang,
K.R.Yang,
W.H.Armstrong,
M.R.Gunner,
V.S.Batista,
R.J.Debus,
G.W.Brudvig.
High-Resolution Cryo-Em Structure of Photosystem II From the Mesophilic Cyanobacterium, Synechocystis Sp. Pcc 6803 To Be Published.
Page generated: Thu Mar 31 04:09:47 2022
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