Magnesium in PDB 7rdz: Sars-Cov-2 Replication-Transcription Complex Bound to NSP13 Helicase - NSP13(2)-Rtc - Apo Class

Enzymatic activity of Sars-Cov-2 Replication-Transcription Complex Bound to NSP13 Helicase - NSP13(2)-Rtc - Apo Class

All present enzymatic activity of Sars-Cov-2 Replication-Transcription Complex Bound to NSP13 Helicase - NSP13(2)-Rtc - Apo Class:
2.7.7.48; 3.6.4.12; 3.6.4.13;

Other elements in 7rdz:

The structure of Sars-Cov-2 Replication-Transcription Complex Bound to NSP13 Helicase - NSP13(2)-Rtc - Apo Class also contains other interesting chemical elements:

Zinc (Zn) 8 atoms

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Sars-Cov-2 Replication-Transcription Complex Bound to NSP13 Helicase - NSP13(2)-Rtc - Apo Class (pdb code 7rdz). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Sars-Cov-2 Replication-Transcription Complex Bound to NSP13 Helicase - NSP13(2)-Rtc - Apo Class, PDB code: 7rdz:

Magnesium binding site 1 out of 1 in 7rdz

Go back to Magnesium Binding Sites List in 7rdz
Magnesium binding site 1 out of 1 in the Sars-Cov-2 Replication-Transcription Complex Bound to NSP13 Helicase - NSP13(2)-Rtc - Apo Class


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Sars-Cov-2 Replication-Transcription Complex Bound to NSP13 Helicase - NSP13(2)-Rtc - Apo Class within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg2002

b:119.7
occ:1.00
O1A A:ADP2003 1.9 120.4 1.0
OD2 A:ASP218 1.9 110.8 1.0
O1B A:ADP2003 1.9 120.4 1.0
O2B A:ADP2003 2.1 120.4 1.0
OD1 A:ASN209 2.2 102.7 1.0
PB A:ADP2003 2.3 120.4 1.0
CG A:ASP218 2.7 110.8 1.0
PA A:ADP2003 2.9 120.4 1.0
H5'1 A:ADP2003 3.0 120.4 1.0
CG A:ASN209 3.0 102.7 1.0
O3A A:ADP2003 3.0 120.4 1.0
HB2 A:ASP218 3.0 110.8 1.0
HD21 A:ASN209 3.3 102.7 1.0
CB A:ASP218 3.4 110.8 1.0
O5' A:ADP2003 3.5 120.4 1.0
ND2 A:ASN209 3.5 102.7 1.0
OD1 A:ASP218 3.6 110.8 1.0
HB3 A:ASP218 3.7 110.8 1.0
C5' A:ADP2003 3.7 120.4 1.0
O3B A:ADP2003 3.7 120.4 1.0
HZ3 A:LYS73 4.1 118.2 1.0
CB A:ASN209 4.2 102.7 1.0
HB3 A:ASN209 4.2 102.7 1.0
H4' A:ADP2003 4.2 120.4 1.0
HA A:ASN209 4.2 102.7 1.0
O2A A:ADP2003 4.3 120.4 1.0
HD22 A:ASN209 4.3 102.7 1.0
H5'2 A:ADP2003 4.5 120.4 1.0
HE1 A:PHE35 4.5 100.9 1.0
HE1 A:TYR217 4.5 105.2 1.0
OD2 A:ASP208 4.5 98.2 1.0
C4' A:ADP2003 4.6 120.4 1.0
OD1 A:ASP208 4.6 98.2 1.0
HH12 A:ARG116 4.7 112.3 1.0
CA A:ASN209 4.7 102.7 1.0
CG A:ASP208 4.7 98.2 1.0
CA A:ASP218 4.8 110.8 1.0
NZ A:LYS73 4.8 118.2 1.0
HA A:ASP218 4.8 110.8 1.0
HZ2 A:LYS73 4.9 118.2 1.0
HZ1 A:LYS73 4.9 118.2 1.0
HB2 A:ASN209 5.0 102.7 1.0
CE1 A:TYR217 5.0 105.2 1.0

Reference:

J.Chen, Q.Wang, B.Malone, E.C.Llewellyn, K.Maruthi, E.T.Eng, J.Perry, E.A.Campbell, D.E.Shaw, S.A.Darst. Ensemble Cryo-Electron Microscopy Reveals Conformational States of the Sars-Cov-2 Helicase Replication-Transcription Complex Biorxiv 2021.
DOI: 10.1101/2021.11.10.468168
Page generated: Thu Nov 25 10:09:31 2021

Last articles

Mg in 4Y52
Mg in 4Y30
Mg in 4Y2V
Mg in 4Y2X
Mg in 4Y2Y
Mg in 4Y2U
Mg in 4Y2T
Mg in 4Y2Q
Mg in 4Y2R
Mg in 4Y2S
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy