Magnesium in PDB 7rdz: Sars-Cov-2 Replication-Transcription Complex Bound to NSP13 Helicase - NSP13(2)-Rtc - Apo Class

Enzymatic activity of Sars-Cov-2 Replication-Transcription Complex Bound to NSP13 Helicase - NSP13(2)-Rtc - Apo Class

All present enzymatic activity of Sars-Cov-2 Replication-Transcription Complex Bound to NSP13 Helicase - NSP13(2)-Rtc - Apo Class:
2.7.7.48; 3.6.4.12; 3.6.4.13;

Other elements in 7rdz:

The structure of Sars-Cov-2 Replication-Transcription Complex Bound to NSP13 Helicase - NSP13(2)-Rtc - Apo Class also contains other interesting chemical elements:

Zinc (Zn) 8 atoms

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Sars-Cov-2 Replication-Transcription Complex Bound to NSP13 Helicase - NSP13(2)-Rtc - Apo Class (pdb code 7rdz). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Sars-Cov-2 Replication-Transcription Complex Bound to NSP13 Helicase - NSP13(2)-Rtc - Apo Class, PDB code: 7rdz:

Magnesium binding site 1 out of 1 in 7rdz

Go back to Magnesium Binding Sites List in 7rdz
Magnesium binding site 1 out of 1 in the Sars-Cov-2 Replication-Transcription Complex Bound to NSP13 Helicase - NSP13(2)-Rtc - Apo Class


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Sars-Cov-2 Replication-Transcription Complex Bound to NSP13 Helicase - NSP13(2)-Rtc - Apo Class within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg2002

b:119.7
occ:1.00
O1A A:ADP2003 1.9 120.4 1.0
OD2 A:ASP218 1.9 110.8 1.0
O1B A:ADP2003 1.9 120.4 1.0
O2B A:ADP2003 2.1 120.4 1.0
OD1 A:ASN209 2.2 102.7 1.0
PB A:ADP2003 2.3 120.4 1.0
CG A:ASP218 2.7 110.8 1.0
PA A:ADP2003 2.9 120.4 1.0
H5'1 A:ADP2003 3.0 120.4 1.0
CG A:ASN209 3.0 102.7 1.0
O3A A:ADP2003 3.0 120.4 1.0
HB2 A:ASP218 3.0 110.8 1.0
HD21 A:ASN209 3.3 102.7 1.0
CB A:ASP218 3.4 110.8 1.0
O5' A:ADP2003 3.5 120.4 1.0
ND2 A:ASN209 3.5 102.7 1.0
OD1 A:ASP218 3.6 110.8 1.0
HB3 A:ASP218 3.7 110.8 1.0
C5' A:ADP2003 3.7 120.4 1.0
O3B A:ADP2003 3.7 120.4 1.0
HZ3 A:LYS73 4.1 118.2 1.0
CB A:ASN209 4.2 102.7 1.0
HB3 A:ASN209 4.2 102.7 1.0
H4' A:ADP2003 4.2 120.4 1.0
HA A:ASN209 4.2 102.7 1.0
O2A A:ADP2003 4.3 120.4 1.0
HD22 A:ASN209 4.3 102.7 1.0
H5'2 A:ADP2003 4.5 120.4 1.0
HE1 A:PHE35 4.5 100.9 1.0
HE1 A:TYR217 4.5 105.2 1.0
OD2 A:ASP208 4.5 98.2 1.0
C4' A:ADP2003 4.6 120.4 1.0
OD1 A:ASP208 4.6 98.2 1.0
HH12 A:ARG116 4.7 112.3 1.0
CA A:ASN209 4.7 102.7 1.0
CG A:ASP208 4.7 98.2 1.0
CA A:ASP218 4.8 110.8 1.0
NZ A:LYS73 4.8 118.2 1.0
HA A:ASP218 4.8 110.8 1.0
HZ2 A:LYS73 4.9 118.2 1.0
HZ1 A:LYS73 4.9 118.2 1.0
HB2 A:ASN209 5.0 102.7 1.0
CE1 A:TYR217 5.0 105.2 1.0

Reference:

J.Chen, Q.Wang, B.Malone, E.C.Llewellyn, K.Maruthi, E.T.Eng, J.Perry, E.A.Campbell, D.E.Shaw, S.A.Darst. Ensemble Cryo-Electron Microscopy Reveals Conformational States of the Sars-Cov-2 Helicase Replication-Transcription Complex Biorxiv 2021.
DOI: 10.1101/2021.11.10.468168
Page generated: Thu Nov 25 10:09:31 2021

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