Magnesium in PDB 7rkh: Yeast Ctp Synthase (URA8) Tetramer Bound to Atp/Utp at Neutral pH

Enzymatic activity of Yeast Ctp Synthase (URA8) Tetramer Bound to Atp/Utp at Neutral pH

Magnesium Binding Sites:

Magnesium binding site 1 out of 8 in 7rkh

Magnesium Binding Sites List in 7rkh

Magnesium binding site 1 out of 8 in the Yeast Ctp Synthase (URA8) Tetramer Bound to Atp/Utp at Neutral pH


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Yeast Ctp Synthase (URA8) Tetramer Bound to Atp/Utp at Neutral pH within 5.0Å range: probe atom residue distance (Å) B Occ D:Mg603 b:30.0 occ:1.00 OD2 D:ASP70 1.9 31.5 1.0 OD1 D:ASP70 2.4 31.5 1.0 CG D:ASP70 2.4 31.5 1.0 O1B D:ATP602 2.9 43.5 1.0 O3G D:ATP602 3.0 43.5 1.0 HZ1 D:LYS16 3.1 26.8 1.0 OE2 D:GLU146 3.2 21.2 1.0 HA3 D:GLY17 3.3 37.3 1.0 HZ2 D:LYS16 3.4 26.8 1.0 H D:GLY17 3.4 37.3 1.0 HZ3 D:LYS16 3.4 26.8 1.0 HZ3 D:LYS38 3.5 19.4 1.0 OE1 D:GLU146 3.5 21.2 1.0 HE3 D:LYS38 3.5 19.4 1.0 NZ D:LYS16 3.6 26.8 1.0 CD D:GLU146 3.7 21.2 1.0 O3B D:ATP602 3.8 43.5 1.0 CB D:ASP70 3.9 31.5 1.0 N D:GLY17 3.9 37.3 1.0 HB2 D:LYS16 3.9 26.8 1.0 PB D:ATP602 3.9 43.5 1.0 CA D:GLY17 4.0 37.3 1.0 PG D:ATP602 4.0 43.5 1.0 O2A D:ATP602 4.0 43.5 1.0 HB3 D:ASP70 4.1 31.5 1.0 HA2 D:GLY17 4.1 37.3 1.0 NZ D:LYS38 4.2 19.4 1.0 HD3 D:LYS38 4.2 19.4 1.0 CE D:LYS38 4.3 19.4 1.0 HB2 D:ASP70 4.4 31.5 1.0 O4 D:UTP601 4.4 33.3 1.0 O1A D:ATP602 4.5 43.5 1.0 HZ1 D:LYS38 4.5 19.4 1.0 PA D:ATP602 4.5 43.5 1.0 O3A D:ATP602 4.6 43.5 1.0 OD2 D:ASP68 4.6 39.0 1.0 HH D:TYR74 4.6 28.7 1.0 HD13 D:LEU69 4.7 38.0 1.0 HA D:ASP70 4.7 37.3 1.0 CD D:LYS38 4.8 19.4 1.0 CA D:ASP70 4.9 37.3 1.0 O2G D:ATP602 4.9 43.5 1.0 C D:LYS16 4.9 37.3 1.0 CB D:LYS16 5.0 26.8 1.0 H D:ASP70 5.0 37.3 1.0

Magnesium binding site 2 out of 8 in 7rkh

Magnesium Binding Sites List in 7rkh

Magnesium binding site 2 out of 8 in the Yeast Ctp Synthase (URA8) Tetramer Bound to Atp/Utp at Neutral pH


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Yeast Ctp Synthase (URA8) Tetramer Bound to Atp/Utp at Neutral pH within 5.0Å range: probe atom residue distance (Å) B Occ D:Mg604 b:30.0 occ:1.00 HZ3 D:LYS227 2.9 47.3 1.0 O1B C:UTP602 3.0 33.3 1.0 O2A C:UTP602 3.1 33.3 1.0 O3B C:UTP602 3.1 33.3 1.0 O3A C:UTP602 3.1 33.3 1.0 PB C:UTP602 3.3 33.3 1.0 HZ1 D:LYS227 3.6 47.3 1.0 NZ D:LYS227 3.7 47.3 1.0 PA C:UTP602 3.7 33.3 1.0 O3G C:UTP602 3.7 33.3 1.0 HZ3 D:LYS191 3.9 41.5 1.0 PG C:UTP602 3.9 33.3 1.0 HZ2 D:LYS227 3.9 47.3 1.0 HE2 C:HIS55 4.1 59.4 1.0 C5' C:UTP602 4.2 33.3 1.0 O1G C:UTP602 4.2 33.3 1.0 HZ2 D:LYS191 4.2 41.5 1.0 O5' C:UTP602 4.2 33.3 1.0 NZ D:LYS191 4.6 41.5 1.0 HG C:SER12 4.6 42.8 1.0 NE2 C:HIS55 4.8 59.4 1.0 O2B C:UTP602 4.8 33.3 1.0 HD2 C:HIS55 4.9 59.4 1.0 CE D:LYS227 4.9 47.3 1.0

Magnesium binding site 3 out of 8 in 7rkh

Magnesium Binding Sites List in 7rkh

Magnesium binding site 3 out of 8 in the Yeast Ctp Synthase (URA8) Tetramer Bound to Atp/Utp at Neutral pH


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of Yeast Ctp Synthase (URA8) Tetramer Bound to Atp/Utp at Neutral pH within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg603 b:30.0 occ:1.00 OD2 A:ASP70 1.9 31.5 1.0 OD1 A:ASP70 2.4 31.5 1.0 CG A:ASP70 2.4 31.5 1.0 O1B A:ATP602 2.9 43.5 1.0 O3G A:ATP602 3.0 43.5 1.0 HZ1 A:LYS16 3.1 26.8 1.0 OE2 A:GLU146 3.2 21.2 1.0 HA3 A:GLY17 3.3 37.3 1.0 HZ2 A:LYS16 3.4 26.8 1.0 H A:GLY17 3.4 37.3 1.0 HZ3 A:LYS16 3.4 26.8 1.0 HZ3 A:LYS38 3.5 19.4 1.0 OE1 A:GLU146 3.5 21.2 1.0 HE3 A:LYS38 3.5 19.4 1.0 NZ A:LYS16 3.6 26.8 1.0 CD A:GLU146 3.7 21.2 1.0 O3B A:ATP602 3.8 43.5 1.0 CB A:ASP70 3.9 31.5 1.0 N A:GLY17 3.9 37.3 1.0 HB2 A:LYS16 3.9 26.8 1.0 PB A:ATP602 3.9 43.5 1.0 CA A:GLY17 4.0 37.3 1.0 PG A:ATP602 4.0 43.5 1.0 O2A A:ATP602 4.0 43.5 1.0 HB3 A:ASP70 4.1 31.5 1.0 HA2 A:GLY17 4.1 37.3 1.0 NZ A:LYS38 4.2 19.4 1.0 HD3 A:LYS38 4.2 19.4 1.0 CE A:LYS38 4.3 19.4 1.0 HB2 A:ASP70 4.4 31.5 1.0 O4 A:UTP601 4.4 33.3 1.0 O1A A:ATP602 4.5 43.5 1.0 HZ1 A:LYS38 4.5 19.4 1.0 PA A:ATP602 4.5 43.5 1.0 O3A A:ATP602 4.6 43.5 1.0 OD2 A:ASP68 4.6 39.0 1.0 HH A:TYR74 4.6 28.7 1.0 HD13 A:LEU69 4.7 38.0 1.0 HA A:ASP70 4.7 37.3 1.0 CD A:LYS38 4.8 19.4 1.0 CA A:ASP70 4.9 37.3 1.0 O2G A:ATP602 4.9 43.5 1.0 C A:LYS16 4.9 37.3 1.0 CB A:LYS16 5.0 26.8 1.0 H A:ASP70 5.0 37.3 1.0

Magnesium binding site 4 out of 8 in 7rkh

Magnesium Binding Sites List in 7rkh

Magnesium binding site 4 out of 8 in the Yeast Ctp Synthase (URA8) Tetramer Bound to Atp/Utp at Neutral pH


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 4 of Yeast Ctp Synthase (URA8) Tetramer Bound to Atp/Utp at Neutral pH within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg604 b:30.0 occ:1.00 HZ3 A:LYS227 2.9 47.3 1.0 O2B B:UTP602 3.0 33.3 1.0 O1A B:UTP602 3.1 33.3 1.0 O3B B:UTP602 3.1 33.3 1.0 O3A B:UTP602 3.1 33.3 1.0 PB B:UTP602 3.3 33.3 1.0 HZ1 A:LYS227 3.6 47.3 1.0 NZ A:LYS227 3.7 47.3 1.0 PA B:UTP602 3.7 33.3 1.0 O2G B:UTP602 3.7 33.3 1.0 HZ3 A:LYS191 3.9 41.5 1.0 PG B:UTP602 3.9 33.3 1.0 HZ2 A:LYS227 3.9 47.3 1.0 HE2 B:HIS55 4.1 59.4 1.0 C5' B:UTP602 4.2 33.3 1.0 O1G B:UTP602 4.2 33.3 1.0 HZ2 A:LYS191 4.2 41.5 1.0 O5' B:UTP602 4.2 33.3 1.0 NZ A:LYS191 4.6 41.5 1.0 HG B:SER12 4.6 42.8 1.0 NE2 B:HIS55 4.8 59.4 1.0 O1B B:UTP602 4.8 33.3 1.0 HD2 B:HIS55 4.9 59.4 1.0 CE A:LYS227 4.9 47.3 1.0 HD2 A:LYS227 5.0 47.3 1.0

Magnesium binding site 5 out of 8 in 7rkh

Magnesium Binding Sites List in 7rkh

Magnesium binding site 5 out of 8 in the Yeast Ctp Synthase (URA8) Tetramer Bound to Atp/Utp at Neutral pH


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 5 of Yeast Ctp Synthase (URA8) Tetramer Bound to Atp/Utp at Neutral pH within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg601 b:30.0 occ:1.00 HZ3 B:LYS227 2.9 47.3 1.0 O1B A:UTP601 3.0 33.3 1.0 O2A A:UTP601 3.1 33.3 1.0 O3B A:UTP601 3.1 33.3 1.0 O3A A:UTP601 3.1 33.3 1.0 PB A:UTP601 3.3 33.3 1.0 HZ1 B:LYS227 3.7 47.3 1.0 PA A:UTP601 3.7 33.3 1.0 NZ B:LYS227 3.7 47.3 1.0 O3G A:UTP601 3.7 33.3 1.0 HZ3 B:LYS191 3.8 41.5 1.0 PG A:UTP601 3.9 33.3 1.0 HZ2 B:LYS227 4.0 47.3 1.0 HE2 A:HIS55 4.1 59.4 1.0 C5' A:UTP601 4.2 33.3 1.0 HZ2 B:LYS191 4.2 41.5 1.0 O1G A:UTP601 4.2 33.3 1.0 O5' A:UTP601 4.2 33.3 1.0 NZ B:LYS191 4.5 41.5 1.0 HG A:SER12 4.6 42.8 1.0 NE2 A:HIS55 4.8 59.4 1.0 O2B A:UTP601 4.8 33.3 1.0 HD2 A:HIS55 4.9 59.4 1.0 CE B:LYS227 5.0 47.3 1.0

Magnesium binding site 6 out of 8 in 7rkh

Magnesium Binding Sites List in 7rkh

Magnesium binding site 6 out of 8 in the Yeast Ctp Synthase (URA8) Tetramer Bound to Atp/Utp at Neutral pH


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 6 of Yeast Ctp Synthase (URA8) Tetramer Bound to Atp/Utp at Neutral pH within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg604 b:30.0 occ:1.00 OD2 B:ASP70 1.9 31.5 1.0 OD1 B:ASP70 2.4 31.5 1.0 CG B:ASP70 2.4 31.5 1.0 O1B B:ATP603 2.9 43.5 1.0 O3G B:ATP603 3.0 43.5 1.0 HZ1 B:LYS16 3.1 26.8 1.0 OE2 B:GLU146 3.2 21.2 1.0 HA3 B:GLY17 3.3 37.3 1.0 HZ2 B:LYS16 3.3 26.8 1.0 H B:GLY17 3.4 37.3 1.0 HZ3 B:LYS16 3.4 26.8 1.0 HZ3 B:LYS38 3.5 19.4 1.0 OE1 B:GLU146 3.5 21.2 1.0 HE3 B:LYS38 3.5 19.4 1.0 NZ B:LYS16 3.6 26.8 1.0 CD B:GLU146 3.7 21.2 1.0 O3B B:ATP603 3.8 43.5 1.0 CB B:ASP70 3.9 31.5 1.0 N B:GLY17 3.9 37.3 1.0 HB2 B:LYS16 3.9 26.8 1.0 PB B:ATP603 3.9 43.5 1.0 CA B:GLY17 4.0 37.3 1.0 PG B:ATP603 4.0 43.5 1.0 O2A B:ATP603 4.0 43.5 1.0 HB3 B:ASP70 4.1 31.5 1.0 HA2 B:GLY17 4.1 37.3 1.0 NZ B:LYS38 4.2 19.4 1.0 HD3 B:LYS38 4.2 19.4 1.0 CE B:LYS38 4.3 19.4 1.0 HB2 B:ASP70 4.4 31.5 1.0 O4 B:UTP602 4.4 33.3 1.0 O1A B:ATP603 4.5 43.5 1.0 HZ1 B:LYS38 4.5 19.4 1.0 PA B:ATP603 4.5 43.5 1.0 O3A B:ATP603 4.5 43.5 1.0 OD2 B:ASP68 4.6 39.0 1.0 HH B:TYR74 4.6 28.7 1.0 HD13 B:LEU69 4.7 38.0 1.0 HA B:ASP70 4.7 37.3 1.0 CD B:LYS38 4.8 19.4 1.0 CA B:ASP70 4.9 37.3 1.0 O2G B:ATP603 4.9 43.5 1.0 C B:LYS16 4.9 37.3 1.0 CB B:LYS16 5.0 26.8 1.0 H B:ASP70 5.0 37.3 1.0

Magnesium binding site 7 out of 8 in 7rkh

Magnesium Binding Sites List in 7rkh

Magnesium binding site 7 out of 8 in the Yeast Ctp Synthase (URA8) Tetramer Bound to Atp/Utp at Neutral pH


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 7 of Yeast Ctp Synthase (URA8) Tetramer Bound to Atp/Utp at Neutral pH within 5.0Å range: probe atom residue distance (Å) B Occ C:Mg601 b:30.0 occ:1.00 HZ3 C:LYS227 2.9 47.3 1.0 O2B D:UTP601 3.0 33.3 1.0 O1A D:UTP601 3.1 33.3 1.0 O3B D:UTP601 3.1 33.3 1.0 O3A D:UTP601 3.1 33.3 1.0 PB D:UTP601 3.3 33.3 1.0 HZ1 C:LYS227 3.7 47.3 1.0 NZ C:LYS227 3.7 47.3 1.0 PA D:UTP601 3.7 33.3 1.0 O2G D:UTP601 3.7 33.3 1.0 HZ3 C:LYS191 3.9 41.5 1.0 PG D:UTP601 3.9 33.3 1.0 HZ2 C:LYS227 4.0 47.3 1.0 HE2 D:HIS55 4.1 59.4 1.0 C5' D:UTP601 4.2 33.3 1.0 O1G D:UTP601 4.2 33.3 1.0 O5' D:UTP601 4.2 33.3 1.0 HZ2 C:LYS191 4.2 41.5 1.0 NZ C:LYS191 4.6 41.5 1.0 HG D:SER12 4.6 42.8 1.0 NE2 D:HIS55 4.8 59.4 1.0 O1B D:UTP601 4.8 33.3 1.0 HD2 D:HIS55 4.9 59.4 1.0 CE C:LYS227 4.9 47.3 1.0 HD2 C:LYS227 5.0 47.3 1.0

Magnesium binding site 8 out of 8 in 7rkh

Magnesium Binding Sites List in 7rkh

Magnesium binding site 8 out of 8 in the Yeast Ctp Synthase (URA8) Tetramer Bound to Atp/Utp at Neutral pH


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 8 of Yeast Ctp Synthase (URA8) Tetramer Bound to Atp/Utp at Neutral pH within 5.0Å range: probe atom residue distance (Å) B Occ C:Mg604 b:30.0 occ:1.00 OD2 C:ASP70 1.9 31.5 1.0 OD1 C:ASP70 2.4 31.5 1.0 CG C:ASP70 2.4 31.5 1.0 O1B C:ATP603 2.9 43.5 1.0 O3G C:ATP603 3.0 43.5 1.0 HZ1 C:LYS16 3.1 26.8 1.0 OE2 C:GLU146 3.2 21.2 1.0 HA3 C:GLY17 3.3 37.3 1.0 HZ2 C:LYS16 3.4 26.8 1.0 H C:GLY17 3.4 37.3 1.0 HZ3 C:LYS16 3.4 26.8 1.0 HZ3 C:LYS38 3.5 19.4 1.0 OE1 C:GLU146 3.5 21.2 1.0 HE3 C:LYS38 3.5 19.4 1.0 NZ C:LYS16 3.6 26.8 1.0 CD C:GLU146 3.7 21.2 1.0 O3B C:ATP603 3.8 43.5 1.0 CB C:ASP70 3.9 31.5 1.0 N C:GLY17 3.9 37.3 1.0 HB2 C:LYS16 3.9 26.8 1.0 PB C:ATP603 3.9 43.5 1.0 CA C:GLY17 4.0 37.3 1.0 PG C:ATP603 4.0 43.5 1.0 O2A C:ATP603 4.0 43.5 1.0 HB3 C:ASP70 4.1 31.5 1.0 HA2 C:GLY17 4.1 37.3 1.0 NZ C:LYS38 4.2 19.4 1.0 HD3 C:LYS38 4.2 19.4 1.0 CE C:LYS38 4.3 19.4 1.0 HB2 C:ASP70 4.4 31.5 1.0 O4 C:UTP602 4.4 33.3 1.0 O1A C:ATP603 4.5 43.5 1.0 HZ1 C:LYS38 4.5 19.4 1.0 PA C:ATP603 4.5 43.5 1.0 O3A C:ATP603 4.6 43.5 1.0 OD2 C:ASP68 4.6 39.0 1.0 HH C:TYR74 4.6 28.7 1.0 HD13 C:LEU69 4.7 38.0 1.0 HA C:ASP70 4.7 37.3 1.0 CD C:LYS38 4.8 19.4 1.0 CA C:ASP70 4.9 37.3 1.0 O2G C:ATP603 4.9 43.5 1.0 C C:LYS16 4.9 37.3 1.0 CB C:LYS16 5.0 26.8 1.0 H C:ASP70 5.0 37.3 1.0

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