Atomistry » Magnesium » PDB 7re1-7rqs » 7rlj
Atomistry »
  Magnesium »
    PDB 7re1-7rqs »
      7rlj »

Magnesium in PDB 7rlj: Cryo-Em Structure of Human P97 Bound to Cb-5083 and Atpgs.

Enzymatic activity of Cryo-Em Structure of Human P97 Bound to Cb-5083 and Atpgs.

All present enzymatic activity of Cryo-Em Structure of Human P97 Bound to Cb-5083 and Atpgs.:
3.6.4.6;

Magnesium Binding Sites:

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 12;

Binding sites:

The binding sites of Magnesium atom in the Cryo-Em Structure of Human P97 Bound to Cb-5083 and Atpgs. (pdb code 7rlj). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 12 binding sites of Magnesium where determined in the Cryo-Em Structure of Human P97 Bound to Cb-5083 and Atpgs., PDB code: 7rlj:
Jump to Magnesium binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Magnesium binding site 1 out of 12 in 7rlj

Go back to Magnesium Binding Sites List in 7rlj
Magnesium binding site 1 out of 12 in the Cryo-Em Structure of Human P97 Bound to Cb-5083 and Atpgs.


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Cryo-Em Structure of Human P97 Bound to Cb-5083 and Atpgs. within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg802

b:129.1
occ:1.00
 O3G A:AGS801 2.1 152.5 1.0
O2A A:AGS801 2.2 152.5 1.0
OG1 A:THR252 2.3 119.4 1.0
O1B A:AGS801 2.9 152.5 1.0
CB A:THR252 3.0 119.4 1.0
PA A:AGS801 3.3 152.5 1.0
PG A:AGS801 3.5 152.5 1.0
O1A A:AGS801 3.5 152.5 1.0
OD1 A:ASP304 3.5 123.0 1.0
CG2 A:THR252 3.8 119.4 1.0
OD2 A:ASP304 3.8 123.0 1.0
PB A:AGS801 3.9 152.5 1.0
O2G A:AGS801 3.9 152.5 1.0
CG A:ASP304 4.1 123.0 1.0
O3A A:AGS801 4.1 152.5 1.0
O3B A:AGS801 4.2 152.5 1.0
CA A:THR252 4.3 119.4 1.0
N A:THR252 4.4 119.4 1.0
O5' A:AGS801 4.6 152.5 1.0
S1G A:AGS801 4.9 152.5 1.0

Magnesium binding site 2 out of 12 in 7rlj

Go back to Magnesium Binding Sites List in 7rlj
Magnesium binding site 2 out of 12 in the Cryo-Em Structure of Human P97 Bound to Cb-5083 and Atpgs.


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Cryo-Em Structure of Human P97 Bound to Cb-5083 and Atpgs. within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mg802

b:115.7
occ:1.00
 O3G B:AGS801 2.1 147.9 1.0
O2A B:AGS801 2.2 147.9 1.0
OG1 B:THR252 2.3 107.6 1.0
O1B B:AGS801 2.9 147.9 1.0
CB B:THR252 3.0 107.6 1.0
PA B:AGS801 3.3 147.9 1.0
PG B:AGS801 3.5 147.9 1.0
O1A B:AGS801 3.5 147.9 1.0
OD1 B:ASP304 3.5 125.8 1.0
CG2 B:THR252 3.8 107.6 1.0
OD2 B:ASP304 3.8 125.8 1.0
PB B:AGS801 3.9 147.9 1.0
O2G B:AGS801 3.9 147.9 1.0
CG B:ASP304 4.1 125.8 1.0
O3A B:AGS801 4.1 147.9 1.0
O3B B:AGS801 4.2 147.9 1.0
CA B:THR252 4.3 107.6 1.0
N B:THR252 4.4 107.6 1.0
O5' B:AGS801 4.6 147.9 1.0
S1G B:AGS801 4.9 147.9 1.0

Magnesium binding site 3 out of 12 in 7rlj

Go back to Magnesium Binding Sites List in 7rlj
Magnesium binding site 3 out of 12 in the Cryo-Em Structure of Human P97 Bound to Cb-5083 and Atpgs.


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of Cryo-Em Structure of Human P97 Bound to Cb-5083 and Atpgs. within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Mg802

b:122.1
occ:1.00
 O3G C:AGS801 2.1 89.2 1.0
O2A C:AGS801 2.2 89.2 1.0
OG1 C:THR252 2.3 112.8 1.0
O1B C:AGS801 2.9 89.2 1.0
CB C:THR252 3.0 112.8 1.0
PA C:AGS801 3.3 89.2 1.0
PG C:AGS801 3.5 89.2 1.0
O1A C:AGS801 3.5 89.2 1.0
OD1 C:ASP304 3.5 117.7 1.0
CG2 C:THR252 3.8 112.8 1.0
OD2 C:ASP304 3.8 117.7 1.0
PB C:AGS801 3.9 89.2 1.0
O2G C:AGS801 3.9 89.2 1.0
CG C:ASP304 4.1 117.7 1.0
O3A C:AGS801 4.1 89.2 1.0
O3B C:AGS801 4.2 89.2 1.0
CA C:THR252 4.3 112.8 1.0
N C:THR252 4.4 112.8 1.0
O5' C:AGS801 4.6 89.2 1.0
S1G C:AGS801 4.9 89.2 1.0

Magnesium binding site 4 out of 12 in 7rlj

Go back to Magnesium Binding Sites List in 7rlj
Magnesium binding site 4 out of 12 in the Cryo-Em Structure of Human P97 Bound to Cb-5083 and Atpgs.


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 4 of Cryo-Em Structure of Human P97 Bound to Cb-5083 and Atpgs. within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Mg802

b:135.4
occ:1.00
 O3G D:AGS801 2.1 152.5 1.0
O2A D:AGS801 2.2 152.5 1.0
OG1 D:THR252 2.3 116.0 1.0
O1B D:AGS801 2.9 152.5 1.0
CB D:THR252 3.0 116.0 1.0
PA D:AGS801 3.3 152.5 1.0
PG D:AGS801 3.5 152.5 1.0
O1A D:AGS801 3.5 152.5 1.0
OD1 D:ASP304 3.5 120.7 1.0
CG2 D:THR252 3.8 116.0 1.0
OD2 D:ASP304 3.8 120.7 1.0
PB D:AGS801 3.9 152.5 1.0
O2G D:AGS801 3.9 152.5 1.0
CG D:ASP304 4.1 120.7 1.0
O3A D:AGS801 4.1 152.5 1.0
O3B D:AGS801 4.2 152.5 1.0
CA D:THR252 4.3 116.0 1.0
N D:THR252 4.4 116.0 1.0
O5' D:AGS801 4.6 152.5 1.0
S1G D:AGS801 4.9 152.5 1.0

Magnesium binding site 5 out of 12 in 7rlj

Go back to Magnesium Binding Sites List in 7rlj
Magnesium binding site 5 out of 12 in the Cryo-Em Structure of Human P97 Bound to Cb-5083 and Atpgs.


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 5 of Cryo-Em Structure of Human P97 Bound to Cb-5083 and Atpgs. within 5.0Å range:
probe atom residue distance (Å) B Occ
E:Mg802

b:123.0
occ:1.00
 O3G E:AGS801 2.1 140.8 1.0
O2A E:AGS801 2.2 140.8 1.0
OG1 E:THR252 2.3 111.2 1.0
O1B E:AGS801 2.9 140.8 1.0
CB E:THR252 3.0 111.2 1.0
PA E:AGS801 3.3 140.8 1.0
PG E:AGS801 3.5 140.8 1.0
O1A E:AGS801 3.5 140.8 1.0
OD1 E:ASP304 3.5 128.9 1.0
CG2 E:THR252 3.8 111.2 1.0
OD2 E:ASP304 3.8 128.9 1.0
PB E:AGS801 3.9 140.8 1.0
O2G E:AGS801 3.9 140.8 1.0
CG E:ASP304 4.1 128.9 1.0
O3A E:AGS801 4.1 140.8 1.0
O3B E:AGS801 4.2 140.8 1.0
CA E:THR252 4.3 111.2 1.0
N E:THR252 4.4 111.2 1.0
O5' E:AGS801 4.6 140.8 1.0
S1G E:AGS801 4.9 140.8 1.0

Magnesium binding site 6 out of 12 in 7rlj

Go back to Magnesium Binding Sites List in 7rlj
Magnesium binding site 6 out of 12 in the Cryo-Em Structure of Human P97 Bound to Cb-5083 and Atpgs.


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 6 of Cryo-Em Structure of Human P97 Bound to Cb-5083 and Atpgs. within 5.0Å range:
probe atom residue distance (Å) B Occ
F:Mg802

b:117.6
occ:1.00
 O3G F:AGS801 2.1 135.5 1.0
O2A F:AGS801 2.2 135.5 1.0
OG1 F:THR252 2.3 109.5 1.0
O1B F:AGS801 2.9 135.5 1.0
CB F:THR252 3.0 109.5 1.0
PA F:AGS801 3.3 135.5 1.0
PG F:AGS801 3.5 135.5 1.0
O1A F:AGS801 3.5 135.5 1.0
OD1 F:ASP304 3.5 117.6 1.0
CG2 F:THR252 3.8 109.5 1.0
OD2 F:ASP304 3.8 117.6 1.0
PB F:AGS801 3.9 135.5 1.0
O2G F:AGS801 3.9 135.5 1.0
CG F:ASP304 4.1 117.6 1.0
O3A F:AGS801 4.1 135.5 1.0
O3B F:AGS801 4.2 135.5 1.0
CA F:THR252 4.3 109.5 1.0
N F:THR252 4.4 109.5 1.0
O5' F:AGS801 4.6 135.5 1.0
S1G F:AGS801 4.9 135.5 1.0

Magnesium binding site 7 out of 12 in 7rlj

Go back to Magnesium Binding Sites List in 7rlj
Magnesium binding site 7 out of 12 in the Cryo-Em Structure of Human P97 Bound to Cb-5083 and Atpgs.


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 7 of Cryo-Em Structure of Human P97 Bound to Cb-5083 and Atpgs. within 5.0Å range:
probe atom residue distance (Å) B Occ
L:Mg802

b:164.5
occ:1.00
 O3G L:AGS801 2.1 152.5 1.0
O2A L:AGS801 2.2 152.5 1.0
OG1 L:THR252 2.3 126.2 1.0
O1B L:AGS801 2.9 152.5 1.0
CB L:THR252 3.0 126.2 1.0
PA L:AGS801 3.3 152.5 1.0
PG L:AGS801 3.5 152.5 1.0
O1A L:AGS801 3.5 152.5 1.0
OD1 L:ASP304 3.5 121.7 1.0
CG2 L:THR252 3.8 126.2 1.0
OD2 L:ASP304 3.8 121.7 1.0
PB L:AGS801 3.9 152.5 1.0
O2G L:AGS801 3.9 152.5 1.0
CG L:ASP304 4.1 121.7 1.0
O3A L:AGS801 4.1 152.5 1.0
O3B L:AGS801 4.2 152.5 1.0
CA L:THR252 4.3 126.2 1.0
N L:THR252 4.4 126.2 1.0
O5' L:AGS801 4.6 152.5 1.0
S1G L:AGS801 4.9 152.5 1.0

Magnesium binding site 8 out of 12 in 7rlj

Go back to Magnesium Binding Sites List in 7rlj
Magnesium binding site 8 out of 12 in the Cryo-Em Structure of Human P97 Bound to Cb-5083 and Atpgs.


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 8 of Cryo-Em Structure of Human P97 Bound to Cb-5083 and Atpgs. within 5.0Å range:
probe atom residue distance (Å) B Occ
G:Mg802

b:128.8
occ:1.00
 O3G G:AGS801 2.1 152.5 1.0
O2A G:AGS801 2.2 152.5 1.0
OG1 G:THR252 2.3 116.1 1.0
O1B G:AGS801 2.9 152.5 1.0
CB G:THR252 3.0 116.1 1.0
PA G:AGS801 3.3 152.5 1.0
PG G:AGS801 3.5 152.5 1.0
O1A G:AGS801 3.5 152.5 1.0
OD1 G:ASP304 3.5 121.8 1.0
CG2 G:THR252 3.8 116.1 1.0
OD2 G:ASP304 3.8 121.8 1.0
PB G:AGS801 3.9 152.5 1.0
O2G G:AGS801 3.9 152.5 1.0
CG G:ASP304 4.1 121.8 1.0
O3A G:AGS801 4.1 152.5 1.0
O3B G:AGS801 4.2 152.5 1.0
CA G:THR252 4.3 116.1 1.0
N G:THR252 4.4 116.1 1.0
O5' G:AGS801 4.6 152.5 1.0
S1G G:AGS801 4.9 152.5 1.0

Magnesium binding site 9 out of 12 in 7rlj

Go back to Magnesium Binding Sites List in 7rlj
Magnesium binding site 9 out of 12 in the Cryo-Em Structure of Human P97 Bound to Cb-5083 and Atpgs.


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 9 of Cryo-Em Structure of Human P97 Bound to Cb-5083 and Atpgs. within 5.0Å range:
probe atom residue distance (Å) B Occ
H:Mg802

b:113.5
occ:1.00
 O3G H:AGS801 2.1 136.7 1.0
O2A H:AGS801 2.2 136.7 1.0
OG1 H:THR252 2.3 109.2 1.0
O1B H:AGS801 2.9 136.7 1.0
CB H:THR252 3.0 109.2 1.0
PA H:AGS801 3.3 136.7 1.0
PG H:AGS801 3.5 136.7 1.0
O1A H:AGS801 3.5 136.7 1.0
OD1 H:ASP304 3.5 124.5 1.0
CG2 H:THR252 3.8 109.2 1.0
OD2 H:ASP304 3.8 124.5 1.0
PB H:AGS801 3.9 136.7 1.0
O2G H:AGS801 3.9 136.7 1.0
CG H:ASP304 4.1 124.5 1.0
O3A H:AGS801 4.1 136.7 1.0
O3B H:AGS801 4.2 136.7 1.0
CA H:THR252 4.3 109.2 1.0
N H:THR252 4.4 109.2 1.0
O5' H:AGS801 4.6 136.7 1.0
S1G H:AGS801 4.9 136.7 1.0

Magnesium binding site 10 out of 12 in 7rlj

Go back to Magnesium Binding Sites List in 7rlj
Magnesium binding site 10 out of 12 in the Cryo-Em Structure of Human P97 Bound to Cb-5083 and Atpgs.


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 10 of Cryo-Em Structure of Human P97 Bound to Cb-5083 and Atpgs. within 5.0Å range:
probe atom residue distance (Å) B Occ
I:Mg802

b:117.8
occ:1.00
 O3G I:AGS801 2.1 103.4 1.0
O2A I:AGS801 2.2 103.4 1.0
OG1 I:THR252 2.3 111.1 1.0
O1B I:AGS801 2.9 103.4 1.0
CB I:THR252 3.0 111.1 1.0
PA I:AGS801 3.3 103.4 1.0
PG I:AGS801 3.5 103.4 1.0
O1A I:AGS801 3.5 103.4 1.0
OD1 I:ASP304 3.5 121.3 1.0
CG2 I:THR252 3.8 111.1 1.0
OD2 I:ASP304 3.8 121.3 1.0
PB I:AGS801 3.9 103.4 1.0
O2G I:AGS801 3.9 103.4 1.0
CG I:ASP304 4.1 121.3 1.0
O3A I:AGS801 4.1 103.4 1.0
O3B I:AGS801 4.2 103.4 1.0
CA I:THR252 4.3 111.1 1.0
N I:THR252 4.4 111.1 1.0
O5' I:AGS801 4.6 103.4 1.0
S1G I:AGS801 4.9 103.4 1.0

Reference:

B.Caffrey, X.Zhu, A.Berezuk, K.Tuttle, S.Chittori, S.Subramaniam. Common Mutations of Aaa Atpase P97 and Inhibitor Binding Disrupt Inter-Domain Coupling and Subsequent Allosteric Activation J.Biol.Chem. 2021.
ISSN: ESSN 1083-351X
DOI: 10.1016/J.JBC.2021.101187
Page generated: Thu Oct 3 07:59:55 2024

Last articles

Zn in 9JYW
Zn in 9IR4
Zn in 9IR3
Zn in 9GMX
Zn in 9GMW
Zn in 9JEJ
Zn in 9ERF
Zn in 9ERE
Zn in 9EGV
Zn in 9EGW
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy