Magnesium in PDB 7rll: Crystal Structure of ARF3 From Candida Albicans in Complex with Guanosine-3'-Monophosphate-5'-Diphosphate

Protein crystallography data

The structure of Crystal Structure of ARF3 From Candida Albicans in Complex with Guanosine-3'-Monophosphate-5'-Diphosphate, PDB code: 7rll was solved by P.J.Stogios, K.Michalska, E.Evdokimova, R.Di Leo, A.Savchenko, A.Joachimiak, K.J.F.Satchell, Center For Structural Genomics Ofinfectious Diseases (Csgid), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 48.76 / 1.90
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 50.958, 75.852, 97.518, 90, 90, 90
R / Rfree (%) 18.5 / 23.3

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Crystal Structure of ARF3 From Candida Albicans in Complex with Guanosine-3'-Monophosphate-5'-Diphosphate (pdb code 7rll). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the Crystal Structure of ARF3 From Candida Albicans in Complex with Guanosine-3'-Monophosphate-5'-Diphosphate, PDB code: 7rll:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in 7rll

Go back to Magnesium Binding Sites List in 7rll
Magnesium binding site 1 out of 2 in the Crystal Structure of ARF3 From Candida Albicans in Complex with Guanosine-3'-Monophosphate-5'-Diphosphate


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of ARF3 From Candida Albicans in Complex with Guanosine-3'-Monophosphate-5'-Diphosphate within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg202

b:56.8
occ:1.00
OG1 A:THR27 2.1 60.2 1.0
O A:HOH350 2.2 40.3 0.5
O1B A:G3D201 2.4 42.2 1.0
O A:HOH308 2.4 54.0 1.0
O A:HOH354 2.8 58.1 1.0
CB A:THR27 3.2 59.7 1.0
PB A:G3D201 3.6 50.4 1.0
O3B A:G3D201 3.8 52.1 1.0
OD1 A:ASP63 3.9 64.3 1.0
O A:HOH350 3.9 55.6 0.5
N A:THR27 4.1 59.9 1.0
CG2 A:THR27 4.2 64.6 1.0
CA A:THR27 4.2 55.5 1.0
O A:HOH321 4.2 57.7 1.0
O2A A:G3D201 4.3 62.4 1.0
OD2 A:ASP63 4.3 68.0 1.0
O2B A:G3D201 4.5 43.8 1.0
CG A:ASP63 4.5 64.4 1.0
O3A A:G3D201 4.8 44.6 1.0
O1A A:G3D201 4.8 52.1 1.0
PA A:G3D201 4.8 55.9 1.0

Magnesium binding site 2 out of 2 in 7rll

Go back to Magnesium Binding Sites List in 7rll
Magnesium binding site 2 out of 2 in the Crystal Structure of ARF3 From Candida Albicans in Complex with Guanosine-3'-Monophosphate-5'-Diphosphate


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Crystal Structure of ARF3 From Candida Albicans in Complex with Guanosine-3'-Monophosphate-5'-Diphosphate within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mg202

b:33.5
occ:1.00
O1B B:G3D201 2.0 30.5 1.0
O B:HOH325 2.1 33.8 1.0
OG1 B:THR27 2.1 36.2 1.0
O B:HOH357 2.1 27.8 1.0
O B:HOH328 2.2 29.5 1.0
O B:HOH427 2.3 33.2 1.0
CB B:THR27 3.1 30.7 1.0
PB B:G3D201 3.2 30.6 1.0
O3B B:G3D201 3.4 28.2 1.0
OD1 B:ASP63 3.9 31.3 1.0
O B:HOH506 4.0 50.5 1.0
N B:THR27 4.0 29.0 1.0
O2A B:G3D201 4.1 27.7 1.0
O B:HOH314 4.1 28.9 1.0
CG2 B:THR27 4.1 32.2 1.0
CA B:THR27 4.2 30.7 1.0
O B:HOH468 4.2 39.6 1.0
O2B B:G3D201 4.3 28.4 1.0
O B:HOH432 4.3 33.0 1.0
O3A B:G3D201 4.3 32.1 1.0
OD2 B:ASP63 4.3 33.1 1.0
CG B:ASP63 4.6 30.6 1.0
PA B:G3D201 4.6 31.4 1.0
O B:HOH335 4.6 37.4 1.0
O1A B:G3D201 4.8 33.3 1.0
CG B:LYS26 4.9 37.8 1.0
O B:HOH347 5.0 37.9 1.0

Reference:

P.J.Stogios, P.J.Stogios, K.Michalska, E.Evdokimova, R.Di Leo, A.Savchenko, A.Joachimiak, K.J.F.Satchell, Center For Structural Genomics Ofinfectious Diseases (Csgid). N/A N/A.
Page generated: Sat Aug 21 16:48:31 2021

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