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Magnesium in PDB 7scx: Kras Full-Length G12V in Complex with RGL1 Ras Association Domain

Enzymatic activity of Kras Full-Length G12V in Complex with RGL1 Ras Association Domain

All present enzymatic activity of Kras Full-Length G12V in Complex with RGL1 Ras Association Domain:
3.6.5.2;

Protein crystallography data

The structure of Kras Full-Length G12V in Complex with RGL1 Ras Association Domain, PDB code: 7scx was solved by B.J.Eves, D.A.Kuntz, M.Ikura, C.B.Marshall, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 33.86 / 1.96
Space group C 1 2 1
Cell size a, b, c (Å), α, β, γ (°) 121.95, 38.77, 68.24, 90, 116.72, 90
R / Rfree (%) 17.3 / 21.4

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Kras Full-Length G12V in Complex with RGL1 Ras Association Domain (pdb code 7scx). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Kras Full-Length G12V in Complex with RGL1 Ras Association Domain, PDB code: 7scx:

Magnesium binding site 1 out of 1 in 7scx

Go back to Magnesium Binding Sites List in 7scx
Magnesium binding site 1 out of 1 in the Kras Full-Length G12V in Complex with RGL1 Ras Association Domain


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Kras Full-Length G12V in Complex with RGL1 Ras Association Domain within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg200

b:29.0
occ:1.00
HOG2 A:GSP201 1.3 39.2 1.0
HG1 A:THR35 1.7 34.7 1.0
O2B A:GSP201 2.0 28.0 1.0
O A:HOH343 2.0 31.0 1.0
OG A:SER17 2.0 26.7 1.0
OG1 A:THR35 2.1 28.9 1.0
O2G A:GSP201 2.2 32.6 1.0
O A:HOH321 2.3 31.4 1.0
HB A:THR35 2.8 38.0 1.0
CB A:THR35 3.0 31.6 1.0
CB A:SER17 3.1 27.4 1.0
PB A:GSP201 3.2 30.7 1.0
PG A:GSP201 3.3 32.0 1.0
H A:THR35 3.4 37.8 1.0
O3B A:GSP201 3.5 30.1 1.0
HOG3 A:GSP201 3.6 39.1 1.0
N A:SER17 3.8 27.6 1.0
N A:THR35 3.9 31.4 1.0
HG21 A:THR35 3.9 39.1 1.0
O3G A:GSP201 3.9 32.5 1.0
HB2 A:LYS16 3.9 38.8 1.0
OD2 A:ASP57 4.0 35.2 1.0
CA A:SER17 4.0 26.9 1.0
CA A:THR35 4.1 28.0 1.0
O2A A:GSP201 4.1 29.2 1.0
CG2 A:THR35 4.1 32.6 1.0
OD1 A:ASP57 4.2 35.4 1.0
HE2 A:LYS16 4.2 39.1 1.0
O1B A:GSP201 4.2 26.2 1.0
O A:ASP33 4.3 35.5 1.0
O3A A:GSP201 4.3 32.9 1.0
O A:HOH311 4.4 38.3 1.0
CG A:ASP57 4.5 35.2 1.0
HA A:PRO34 4.5 36.2 1.0
O1A A:GSP201 4.5 28.6 1.0
HA A:THR35 4.5 33.7 1.0
HZ3 A:LYS16 4.6 37.6 1.0
O A:THR58 4.6 36.1 1.0
PA A:GSP201 4.6 29.5 1.0
HG23 A:THR35 4.6 39.1 1.0
HG22 A:THR35 4.8 39.1 1.0
C A:PRO34 4.8 36.5 1.0
CB A:LYS16 4.8 32.3 1.0
S1G A:GSP201 4.9 31.3 1.0
C A:LYS16 4.9 29.6 1.0

Reference:

B.J.Eves, T.Gebregiworgis, G.M.C.Gasmi-Seabrook, D.A.Kuntz, G.Prive, C.B.Marshall, M.Ikura. Effector Beta Strand-Swapped Heterotetrameric Complex of Oncogenic KRASG12V with Ras Association Domain of RGL1 To Be Published.
Page generated: Thu Oct 3 08:43:07 2024

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