Magnesium in PDB 7sh1: Class II Uvra Protein - ECM16

Protein crystallography data

The structure of Class II Uvra Protein - ECM16, PDB code: 7sh1 was solved by G.Priyanka, E.Amanda, C.Xi, I.I.Mathews, M.Paola, K.Chu-Young, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 173.61 / 2.04
Space group P 31 2 1
Cell size a, b, c (Å), α, β, γ (°) 141.13, 141.13, 173.614, 90, 90, 120
R / Rfree (%) 20.7 / 23.5

Other elements in 7sh1:

The structure of Class II Uvra Protein - ECM16 also contains other interesting chemical elements:

Zinc (Zn) 4 atoms

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Class II Uvra Protein - ECM16 (pdb code 7sh1). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the Class II Uvra Protein - ECM16, PDB code: 7sh1:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in 7sh1

Go back to Magnesium Binding Sites List in 7sh1
Magnesium binding site 1 out of 2 in the Class II Uvra Protein - ECM16


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Class II Uvra Protein - ECM16 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg803

b:60.4
occ:1.00
O2A A:ADP801 2.6 32.8 1.0
OG A:SER57 2.7 34.3 1.0
O A:HOH940 3.1 35.2 1.0
O A:HOH1167 3.6 44.6 1.0
CB A:SER57 3.8 29.1 1.0
O3B A:ADP801 3.8 34.2 1.0
PA A:ADP801 4.0 29.3 1.0
O A:THR682 4.3 47.3 1.0
OE1 A:GLU687 4.3 43.2 1.0
O A:HOH1092 4.5 32.1 1.0
O2B A:ADP801 4.5 31.8 1.0
PB A:ADP801 4.6 30.6 1.0
O3A A:ADP801 4.6 28.9 1.0
O A:HOH1211 4.6 44.3 1.0
O1A A:ADP801 4.7 29.8 1.0
OE2 A:GLU687 4.8 40.5 1.0
CB A:SER684 4.9 42.0 1.0
O A:HOH997 4.9 51.2 1.0
CD A:GLU687 4.9 44.1 1.0

Magnesium binding site 2 out of 2 in 7sh1

Go back to Magnesium Binding Sites List in 7sh1
Magnesium binding site 2 out of 2 in the Class II Uvra Protein - ECM16


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Class II Uvra Protein - ECM16 within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mg801

b:58.1
occ:1.00
OG B:SER57 2.4 39.1 1.0
O2A B:ADP802 2.4 31.2 1.0
O B:HOH1072 2.8 39.1 1.0
CB B:SER57 3.5 27.3 1.0
O B:HOH1127 3.8 39.7 1.0
PA B:ADP802 3.8 28.8 1.0
O B:HOH924 3.9 32.7 1.0
O1B B:ADP802 4.0 31.3 1.0
O B:THR682 4.4 40.6 1.0
O1A B:ADP802 4.4 28.5 1.0
O B:HOH1214 4.6 44.1 1.0
N7 B:ADP802 4.6 38.8 1.0
C8 B:ADP802 4.6 39.9 1.0
O3A B:ADP802 4.7 33.4 1.0
CA B:SER57 4.8 28.3 1.0
O5' B:ADP802 4.8 33.2 1.0
OE1 B:GLU687 4.8 44.4 1.0
O B:HOH945 4.9 32.0 1.0
PB B:ADP802 4.9 27.2 1.0
OE2 B:GLU687 5.0 41.8 1.0

Reference:

G.Priyanka, E.Amanda, C.Xi, I.I.Mathews, M.Paola, K.Chu-Young. Class II Uvra Protein - ECM16 To Be Published.
Page generated: Thu Apr 6 22:05:39 2023

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