Magnesium in PDB 7stb: Closed State of RAD24-Rfc:9-1-1 Bound to A 5' Ss/Dsdna Junction

The binding sites of Magnesium atom in the Closed State of RAD24-Rfc:9-1-1 Bound to A 5' Ss/Dsdna Junction (pdb code 7stb). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 4 binding sites of Magnesium where determined in the Closed State of RAD24-Rfc:9-1-1 Bound to A 5' Ss/Dsdna Junction, PDB code: 7stb:
Jump to Magnesium binding site number: 1; 2; 3; 4;

Magnesium binding site 1 out of 4 in the Closed State of RAD24-Rfc:9-1-1 Bound to A 5' Ss/Dsdna Junction


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Closed State of RAD24-Rfc:9-1-1 Bound to A 5' Ss/Dsdna Junction within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg902 b:30.3 occ:1.00 O2B A:AGS901 1.9 16.1 1.0 OG A:SER116 2.2 14.4 1.0 OE2 A:GLU187 2.5 13.5 1.0 O2G A:AGS901 2.5 16.1 1.0 HB3 A:SER116 2.7 14.4 1.0 O2A A:AGS901 2.7 16.1 1.0 CB A:SER116 3.0 14.4 1.0 CD A:GLU187 3.2 13.5 1.0 OE1 A:GLU187 3.2 13.5 1.0 PB A:AGS901 3.4 16.1 1.0 HB2 A:SER116 3.5 14.4 1.0 PA A:AGS901 3.5 16.1 1.0 HH22 A:ARG312 3.6 18.0 1.0 H A:SER116 3.6 14.4 1.0 O1A A:AGS901 3.7 16.1 1.0 O3A A:AGS901 3.8 16.1 1.0 PG A:AGS901 3.8 16.1 1.0 O3B A:AGS901 4.1 16.1 1.0 CA A:SER116 4.2 14.4 1.0 N A:SER116 4.3 14.4 1.0 O3G A:AGS901 4.3 16.1 1.0 NH2 A:ARG312 4.3 18.0 1.0 HH21 A:ARG312 4.3 18.0 1.0 O1B A:AGS901 4.4 16.1 1.0 H A:THR117 4.6 16.5 1.0 CG A:GLU187 4.7 13.5 1.0 HG1 A:THR117 4.9 16.5 1.0 HA A:SER116 4.9 14.4 1.0 HG3 A:GLU187 4.9 13.5 1.0 HG2 A:GLU187 4.9 13.5 1.0 C A:SER116 5.0 14.4 1.0 H3' A:AGS901 5.0 16.1 1.0

Magnesium binding site 2 out of 4 in the Closed State of RAD24-Rfc:9-1-1 Bound to A 5' Ss/Dsdna Junction


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Closed State of RAD24-Rfc:9-1-1 Bound to A 5' Ss/Dsdna Junction within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg401 b:35.2 occ:1.00 O2G B:AGS402 1.9 34.0 1.0 OG1 B:THR56 1.9 27.0 1.0 O2B B:AGS402 2.6 34.0 1.0 O3G B:AGS402 2.7 34.0 1.0 PG B:AGS402 2.8 34.0 1.0 HH22 C:ARG160 3.1 29.3 1.0 CB B:THR56 3.2 27.0 1.0 HH21 C:ARG160 3.3 29.3 1.0 HB B:THR56 3.4 27.0 1.0 OD2 B:ASP114 3.5 21.0 1.0 NH2 C:ARG160 3.5 29.3 1.0 H B:THR56 3.6 27.0 1.0 HG21 B:THR56 3.7 27.0 1.0 OD1 B:ASP114 3.7 21.0 1.0 O3B B:AGS402 3.8 34.0 1.0 PB B:AGS402 3.8 34.0 1.0 CG2 B:THR56 4.0 27.0 1.0 CG B:ASP114 4.0 21.0 1.0 N B:THR56 4.2 27.0 1.0 CA B:THR56 4.3 27.0 1.0 HG23 B:THR56 4.3 27.0 1.0 O2A B:AGS402 4.3 34.0 1.0 HH22 B:ARG203 4.3 34.8 1.0 S1G B:AGS402 4.3 34.0 1.0 O3A B:AGS402 4.4 34.0 1.0 HG3 B:GLU115 4.5 21.1 1.0 HB2 B:LYS55 4.5 27.9 1.0 HA B:THR56 4.6 27.0 1.0 HE2 B:LYS55 4.7 27.9 1.0 HH21 C:ARG131 4.8 24.8 1.0 HG22 B:THR56 4.8 27.0 1.0 HH21 B:ARG203 4.8 34.8 1.0 CZ C:ARG160 4.8 29.3 1.0 OE1 C:GLU135 4.9 27.5 1.0 PA B:AGS402 4.9 34.0 1.0 NH2 B:ARG203 4.9 34.8 1.0 HD3 C:ARG132 5.0 26.1 1.0 O1B B:AGS402 5.0 34.0 1.0

Magnesium binding site 3 out of 4 in the Closed State of RAD24-Rfc:9-1-1 Bound to A 5' Ss/Dsdna Junction


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of Closed State of RAD24-Rfc:9-1-1 Bound to A 5' Ss/Dsdna Junction within 5.0Å range: probe atom residue distance (Å) B Occ C:Mg401 b:23.0 occ:1.00 O2G C:AGS402 2.0 23.2 1.0 OG1 C:THR60 2.0 22.0 1.0 O2B C:AGS402 2.4 23.2 1.0 O2A C:AGS402 2.9 23.2 1.0 CB C:THR60 3.2 22.0 1.0 HB C:THR60 3.3 22.0 1.0 HH22 D:ARG183 3.3 18.9 1.0 HH22 C:ARG206 3.4 23.1 1.0 PG C:AGS402 3.4 23.2 1.0 OE1 C:GLU118 3.7 20.9 1.0 OD1 C:ASP117 3.7 21.9 1.0 PB C:AGS402 3.7 23.2 1.0 OD2 C:ASP117 3.7 21.9 1.0 H C:THR60 3.7 22.0 1.0 HG21 C:THR60 3.7 22.0 1.0 HD3 D:ARG155 3.7 21.3 1.0 HH21 D:ARG183 3.8 18.9 1.0 NH2 D:ARG183 3.8 18.9 1.0 O3B C:AGS402 3.9 23.2 1.0 CG2 C:THR60 4.0 22.0 1.0 NH2 C:ARG206 4.1 23.1 1.0 CG C:ASP117 4.1 21.9 1.0 PA C:AGS402 4.1 23.2 1.0 O3G C:AGS402 4.2 23.2 1.0 HH21 C:ARG206 4.3 23.1 1.0 O3A C:AGS402 4.3 23.2 1.0 N C:THR60 4.3 22.0 1.0 HH11 D:ARG155 4.4 21.3 1.0 HD23 C:LEU146 4.4 20.7 1.0 CA C:THR60 4.4 22.0 1.0 HH21 D:ARG154 4.4 18.6 1.0 HG23 C:THR60 4.4 22.0 1.0 HD22 C:LEU146 4.5 20.7 1.0 CD D:ARG155 4.7 21.3 1.0 O1A C:AGS402 4.7 23.2 1.0 HA C:THR60 4.7 22.0 1.0 HB2 C:LYS59 4.7 21.1 1.0 HH12 C:ARG206 4.7 23.1 1.0 S1G C:AGS402 4.7 23.2 1.0 HD2 D:ARG155 4.8 21.3 1.0 O1B C:AGS402 4.8 23.2 1.0 CD C:GLU118 4.8 20.9 1.0 HG22 C:THR60 4.8 22.0 1.0 CD2 C:LEU146 4.9 20.7 1.0 OE1 D:GLU158 4.9 22.4 1.0 NH2 D:ARG154 4.9 18.6 1.0 NH1 D:ARG155 4.9 21.3 1.0 HE2 C:LYS59 4.9 21.1 1.0

Magnesium binding site 4 out of 4 in the Closed State of RAD24-Rfc:9-1-1 Bound to A 5' Ss/Dsdna Junction


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 4 of Closed State of RAD24-Rfc:9-1-1 Bound to A 5' Ss/Dsdna Junction within 5.0Å range: probe atom residue distance (Å) B Occ D:Mg401 b:14.2 occ:1.00 O2G D:AGS402 2.2 21.9 1.0 OG1 D:THR72 2.4 19.6 1.0 O2B D:AGS402 2.6 21.9 1.0 HH22 E:ARG184 3.2 25.4 1.0 HH21 E:ARG155 3.2 26.1 1.0 HH21 E:ARG184 3.5 25.4 1.0 O2A D:AGS402 3.6 21.9 1.0 HD3 E:ARG156 3.6 28.2 1.0 OD1 D:ASP140 3.6 19.6 1.0 NH2 E:ARG184 3.7 25.4 1.0 PG D:AGS402 3.7 21.9 1.0 OD2 D:ASP140 3.7 19.6 1.0 CB D:THR72 3.7 19.6 1.0 HB D:THR72 3.7 19.6 1.0 NH2 E:ARG155 3.9 26.1 1.0 H D:THR72 4.0 19.6 1.0 CG D:ASP140 4.0 19.6 1.0 OE2 D:GLU141 4.0 21.7 1.0 PB D:AGS402 4.1 21.9 1.0 HH22 E:ARG155 4.1 26.1 1.0 HG21 D:THR72 4.2 19.6 1.0 OE1 E:GLU159 4.3 31.7 1.0 O3G D:AGS402 4.3 21.9 1.0 O3B D:AGS402 4.3 21.9 1.0 HG21 D:ILE169 4.4 17.1 1.0 HG3 D:GLU141 4.4 21.7 1.0 CD E:ARG156 4.5 28.2 1.0 HD2 E:ARG156 4.5 28.2 1.0 CG2 D:THR72 4.5 19.6 1.0 HH22 D:ARG229 4.6 25.0 1.0 N D:THR72 4.6 19.6 1.0 HH11 E:ARG156 4.6 28.2 1.0 HB2 D:LYS71 4.6 17.1 1.0 CA D:THR72 4.7 19.6 1.0 HE2 D:LYS71 4.7 17.1 1.0 HE E:ARG155 4.8 26.1 1.0 HG2 E:ARG156 4.8 28.2 1.0 PA D:AGS402 4.8 21.9 1.0 O3A D:AGS402 4.9 21.9 1.0 HG23 D:THR72 4.9 19.6 1.0 HA D:THR72 5.0 19.6 1.0 CZ E:ARG184 5.0 25.4 1.0 S1G D:AGS402 5.0 21.9 1.0 HG22 D:ILE169 5.0 17.1 1.0 CZ E:ARG155 5.0 26.1 1.0

J.C.Castaneda, M.Schrecker, D.Remus, R.K.Hite. Mechanisms of Loading and Release of the 9-1-1 Checkpoint Clamp. Nat.Struct.Mol.Biol. V. 29 369 2022.
ISSN: ESSN 1545-9985
PubMed: 35314831
DOI: 10.1038/S41594-022-00741-7