Magnesium in PDB 7sud: Cryoem Structure of Dna-Pk Complex VIII

All present enzymatic activity of Cryoem Structure of Dna-Pk Complex VIII:
2.7.11.1;

The binding sites of Magnesium atom in the Cryoem Structure of Dna-Pk Complex VIII (pdb code 7sud). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Cryoem Structure of Dna-Pk Complex VIII, PDB code: 7sud:

Magnesium binding site 1 out of 1 in the Cryoem Structure of Dna-Pk Complex VIII


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Cryoem Structure of Dna-Pk Complex VIII within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg4201 b:74.8 occ:1.00 OD1 A:ASN3927 2.1 36.4 1.0 OD2 A:ASP3941 2.1 29.9 1.0 O1G A:ATP4202 2.3 36.5 1.0 O2G A:ATP4202 2.8 36.5 1.0 CG A:ASP3941 2.8 29.9 1.0 CB A:ASP3941 3.0 29.9 1.0 PG A:ATP4202 3.0 36.5 1.0 CG A:ASN3927 3.2 36.4 1.0 O1A A:ATP4202 3.5 36.5 1.0 O1B A:ATP4202 3.7 36.5 1.0 ND2 A:ASN3927 3.9 36.4 1.0 OD1 A:ASP3941 4.0 29.9 1.0 O3G A:ATP4202 4.1 36.5 1.0 O3B A:ATP4202 4.2 36.5 1.0 CA A:ASN3927 4.3 36.4 1.0 CB A:ASN3927 4.4 36.4 1.0 NE2 A:HIS3924 4.5 18.0 1.0 PB A:ATP4202 4.5 36.5 1.0 O A:ASN3926 4.5 30.3 1.0 CA A:ASP3941 4.5 29.9 1.0 CD1 A:ILE3940 4.6 34.0 1.0 N A:ASN3927 4.6 36.4 1.0 CG1 A:ILE3940 4.7 34.0 1.0 C A:ASN3926 4.7 30.3 1.0 PA A:ATP4202 4.8 36.5 1.0 O3A A:ATP4202 4.8 36.5 1.0 CE1 A:HIS3924 4.9 18.0 1.0

L.Liu, X.Chen, J.Li, H.Wang, C.J.Buehl, N.J.Goff, K.Meek, W.Yang, M.Gellert. Autophosphorylation Transforms Dna-Pk From Protecting to Processing Dna Ends. Mol.Cell V. 82 177 2022.
ISSN: ISSN 1097-2765
PubMed: 34936881
DOI: 10.1016/J.MOLCEL.2021.11.025