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Magnesium in PDB 7svv: Tnsbctd-Tnsc Complex

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Tnsbctd-Tnsc Complex (pdb code 7svv). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 10 binding sites of Magnesium where determined in the Tnsbctd-Tnsc Complex, PDB code: 7svv:
Jump to Magnesium binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Magnesium binding site 1 out of 10 in 7svv

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Magnesium binding site 1 out of 10 in the Tnsbctd-Tnsc Complex


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Tnsbctd-Tnsc Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg301

b:51.8
occ:1.00
 O1G A:ANP300 1.6 51.8 1.0
OG1 A:THR67 2.1 51.8 1.0
O1B A:ANP300 2.3 51.8 1.0
PG A:ANP300 2.5 51.8 1.0
O2G A:ANP300 2.6 51.8 1.0
CB A:THR67 3.1 51.8 1.0
O1A A:ANP300 3.4 51.8 1.0
PB A:ANP300 3.5 51.8 1.0
N3B A:ANP300 3.6 51.8 1.0
O3G A:ANP300 3.7 51.8 1.0
OE2 A:GLU145 4.1 51.8 1.0
CG2 A:THR67 4.1 51.8 1.0
N A:THR67 4.1 51.8 1.0
CA A:THR67 4.2 51.8 1.0
O3A A:ANP300 4.2 51.8 1.0
OD2 A:ASP144 4.3 51.8 1.0
PA A:ANP300 4.3 51.8 1.0
OD1 A:ASP144 4.5 51.8 1.0
O2B A:ANP300 4.7 51.8 1.0
O2A A:ANP300 4.8 51.8 1.0
CG A:ASP144 4.8 51.8 1.0

Magnesium binding site 2 out of 10 in 7svv

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Magnesium binding site 2 out of 10 in the Tnsbctd-Tnsc Complex


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Tnsbctd-Tnsc Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mg301

b:51.8
occ:1.00
 O1G B:ANP300 1.7 51.8 1.0
OG1 B:THR67 2.1 51.8 1.0
O2G B:ANP300 2.4 51.8 1.0
PG B:ANP300 2.5 51.8 1.0
O1B B:ANP300 2.6 51.8 1.0
CB B:THR67 3.1 51.8 1.0
O1A B:ANP300 3.2 51.8 1.0
O3G B:ANP300 3.7 51.8 1.0
PB B:ANP300 3.7 51.8 1.0
N3B B:ANP300 3.7 51.8 1.0
OE2 B:GLU145 4.1 51.8 1.0
CG2 B:THR67 4.1 51.8 1.0
N B:THR67 4.1 51.8 1.0
CA B:THR67 4.2 51.8 1.0
O3A B:ANP300 4.3 51.8 1.0
PA B:ANP300 4.3 51.8 1.0
OD2 B:ASP144 4.3 51.8 1.0
OD1 B:ASP144 4.5 51.8 1.0
CG B:ASP144 4.8 51.8 1.0
O2A B:ANP300 4.9 51.8 1.0

Magnesium binding site 3 out of 10 in 7svv

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Magnesium binding site 3 out of 10 in the Tnsbctd-Tnsc Complex


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of Tnsbctd-Tnsc Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Mg301

b:51.8
occ:1.00
 O1G C:ANP300 1.3 51.8 1.0
OG1 C:THR67 2.1 51.8 1.0
PG C:ANP300 2.4 51.8 1.0
O3G C:ANP300 2.8 51.8 1.0
O1B C:ANP300 3.0 51.8 1.0
CB C:THR67 3.1 51.8 1.0
O1A C:ANP300 3.2 51.8 1.0
N3B C:ANP300 3.4 51.8 1.0
PB C:ANP300 3.6 51.8 1.0
O2G C:ANP300 3.7 51.8 1.0
O3A C:ANP300 3.8 51.8 1.0
OE2 C:GLU145 4.1 51.8 1.0
CG2 C:THR67 4.1 51.8 1.0
N C:THR67 4.1 51.8 1.0
CA C:THR67 4.2 51.8 1.0
PA C:ANP300 4.3 51.8 1.0
OD2 C:ASP144 4.3 51.8 1.0
OD1 C:ASP144 4.5 51.8 1.0
CG C:ASP144 4.8 51.8 1.0

Magnesium binding site 4 out of 10 in 7svv

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Magnesium binding site 4 out of 10 in the Tnsbctd-Tnsc Complex


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 4 of Tnsbctd-Tnsc Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Mg301

b:51.8
occ:1.00
 O1G D:ANP300 1.6 51.8 1.0
O1B D:ANP300 2.0 51.8 1.0
OG1 D:THR67 2.1 51.8 1.0
PG D:ANP300 2.6 51.8 1.0
O2G D:ANP300 2.9 51.8 1.0
CB D:THR67 3.1 51.8 1.0
PB D:ANP300 3.3 51.8 1.0
O1A D:ANP300 3.5 51.8 1.0
N3B D:ANP300 3.5 51.8 1.0
O3G D:ANP300 3.9 51.8 1.0
OE2 D:GLU145 4.1 51.8 1.0
CG2 D:THR67 4.1 51.8 1.0
N D:THR67 4.1 51.8 1.0
CA D:THR67 4.2 51.8 1.0
O3A D:ANP300 4.2 51.8 1.0
PA D:ANP300 4.2 51.8 1.0
OD2 D:ASP144 4.3 51.8 1.0
O2A D:ANP300 4.5 51.8 1.0
O2B D:ANP300 4.5 51.8 1.0
OD1 D:ASP144 4.5 51.8 1.0
CG D:ASP144 4.8 51.8 1.0

Magnesium binding site 5 out of 10 in 7svv

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Magnesium binding site 5 out of 10 in the Tnsbctd-Tnsc Complex


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 5 of Tnsbctd-Tnsc Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
E:Mg301

b:51.8
occ:1.00
 O1G E:ANP300 1.8 51.8 1.0
O1B E:ANP300 1.9 51.8 1.0
OG1 E:THR67 2.1 51.8 1.0
PB E:ANP300 2.8 51.8 1.0
PG E:ANP300 3.1 51.8 1.0
CB E:THR67 3.1 51.8 1.0
O2B E:ANP300 3.2 51.8 1.0
N3B E:ANP300 3.2 51.8 1.0
O3G E:ANP300 3.8 51.8 1.0
O1A E:ANP300 3.9 51.8 1.0
OE2 E:GLU145 4.1 51.8 1.0
O3A E:ANP300 4.1 51.8 1.0
CG2 E:THR67 4.1 51.8 1.0
N E:THR67 4.1 51.8 1.0
CA E:THR67 4.2 51.8 1.0
O2G E:ANP300 4.3 51.8 1.0
OD2 E:ASP144 4.3 51.8 1.0
PA E:ANP300 4.3 51.8 1.0
OD1 E:ASP144 4.5 51.8 1.0
O2A E:ANP300 4.8 51.8 1.0
CG E:ASP144 4.8 51.8 1.0

Magnesium binding site 6 out of 10 in 7svv

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Magnesium binding site 6 out of 10 in the Tnsbctd-Tnsc Complex


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 6 of Tnsbctd-Tnsc Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
F:Mg301

b:51.8
occ:1.00
 O1G F:ANP300 1.8 51.8 1.0
O1B F:ANP300 1.9 51.8 1.0
OG1 F:THR67 2.1 51.8 1.0
PB F:ANP300 2.8 51.8 1.0
PG F:ANP300 3.1 51.8 1.0
CB F:THR67 3.1 51.8 1.0
O2B F:ANP300 3.2 51.8 1.0
N3B F:ANP300 3.2 51.8 1.0
O3G F:ANP300 3.8 51.8 1.0
O1A F:ANP300 3.9 51.8 1.0
OE2 F:GLU145 4.1 51.8 1.0
O3A F:ANP300 4.1 51.8 1.0
CG2 F:THR67 4.1 51.8 1.0
N F:THR67 4.1 51.8 1.0
CA F:THR67 4.2 51.8 1.0
O2G F:ANP300 4.3 51.8 1.0
OD2 F:ASP144 4.3 51.8 1.0
PA F:ANP300 4.3 51.8 1.0
OD1 F:ASP144 4.5 51.8 1.0
O2A F:ANP300 4.8 51.8 1.0
CG F:ASP144 4.8 51.8 1.0

Magnesium binding site 7 out of 10 in 7svv

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Magnesium binding site 7 out of 10 in the Tnsbctd-Tnsc Complex


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 7 of Tnsbctd-Tnsc Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
G:Mg301

b:51.8
occ:1.00
 O1G G:ANP300 1.4 51.8 1.0
OG1 G:THR67 2.1 51.8 1.0
O1B G:ANP300 2.1 51.8 1.0
PG G:ANP300 2.6 51.8 1.0
O2G G:ANP300 3.0 51.8 1.0
CB G:THR67 3.1 51.8 1.0
PB G:ANP300 3.3 51.8 1.0
N3B G:ANP300 3.4 51.8 1.0
O1A G:ANP300 3.7 51.8 1.0
O3G G:ANP300 3.9 51.8 1.0
OE2 G:GLU145 4.1 51.8 1.0
CG2 G:THR67 4.1 51.8 1.0
N G:THR67 4.1 51.8 1.0
CA G:THR67 4.2 51.8 1.0
OD2 G:ASP144 4.3 51.8 1.0
O3A G:ANP300 4.3 51.8 1.0
PA G:ANP300 4.4 51.8 1.0
O2B G:ANP300 4.5 51.8 1.0
OD1 G:ASP144 4.5 51.8 1.0
O2A G:ANP300 4.6 51.8 1.0
CG G:ASP144 4.8 51.8 1.0

Magnesium binding site 8 out of 10 in 7svv

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Magnesium binding site 8 out of 10 in the Tnsbctd-Tnsc Complex


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 8 of Tnsbctd-Tnsc Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
H:Mg301

b:51.8
occ:1.00
 O1G H:ANP300 1.6 51.8 1.0
OG1 H:THR67 2.1 51.8 1.0
O1B H:ANP300 2.1 51.8 1.0
PG H:ANP300 2.7 51.8 1.0
O2G H:ANP300 3.0 51.8 1.0
CB H:THR67 3.1 51.8 1.0
PB H:ANP300 3.4 51.8 1.0
N3B H:ANP300 3.6 51.8 1.0
O1A H:ANP300 3.6 51.8 1.0
O3G H:ANP300 4.0 51.8 1.0
OE2 H:GLU145 4.1 51.8 1.0
CG2 H:THR67 4.1 51.8 1.0
N H:THR67 4.1 51.8 1.0
CA H:THR67 4.2 51.8 1.0
OD2 H:ASP144 4.3 51.8 1.0
O3A H:ANP300 4.3 51.8 1.0
PA H:ANP300 4.4 51.8 1.0
OD1 H:ASP144 4.5 51.8 1.0
O2B H:ANP300 4.6 51.8 1.0
O2A H:ANP300 4.6 51.8 1.0
CG H:ASP144 4.8 51.8 1.0

Magnesium binding site 9 out of 10 in 7svv

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Magnesium binding site 9 out of 10 in the Tnsbctd-Tnsc Complex


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 9 of Tnsbctd-Tnsc Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
I:Mg301

b:51.8
occ:1.00
 O1G I:ANP300 1.6 51.8 1.0
OG1 I:THR67 2.1 51.8 1.0
O1B I:ANP300 2.3 51.8 1.0
O2G I:ANP300 2.6 51.8 1.0
PG I:ANP300 2.6 51.8 1.0
CB I:THR67 3.1 51.8 1.0
O1A I:ANP300 3.4 51.8 1.0
PB I:ANP300 3.5 51.8 1.0
N3B I:ANP300 3.6 51.8 1.0
O3G I:ANP300 3.8 51.8 1.0
OE2 I:GLU145 4.1 51.8 1.0
CG2 I:THR67 4.1 51.8 1.0
N I:THR67 4.1 51.8 1.0
CA I:THR67 4.2 51.8 1.0
O3A I:ANP300 4.3 51.8 1.0
PA I:ANP300 4.3 51.8 1.0
OD2 I:ASP144 4.3 51.8 1.0
OD1 I:ASP144 4.5 51.8 1.0
O2A I:ANP300 4.8 51.8 1.0
O2B I:ANP300 4.8 51.8 1.0
CG I:ASP144 4.8 51.8 1.0

Magnesium binding site 10 out of 10 in 7svv

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Magnesium binding site 10 out of 10 in the Tnsbctd-Tnsc Complex


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 10 of Tnsbctd-Tnsc Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
J:Mg301

b:51.8
occ:1.00
 O1G J:ANP300 1.6 51.8 1.0
O1B J:ANP300 2.0 51.8 1.0
OG1 J:THR67 2.1 51.8 1.0
PG J:ANP300 2.7 51.8 1.0
O2G J:ANP300 2.9 51.8 1.0
CB J:THR67 3.1 51.8 1.0
PB J:ANP300 3.3 51.8 1.0
N3B J:ANP300 3.5 51.8 1.0
O1A J:ANP300 3.6 51.8 1.0
O3G J:ANP300 4.0 51.8 1.0
OE2 J:GLU145 4.1 51.8 1.0
CG2 J:THR67 4.1 51.8 1.0
N J:THR67 4.1 51.8 1.0
CA J:THR67 4.2 51.8 1.0
O3A J:ANP300 4.3 51.8 1.0
OD2 J:ASP144 4.3 51.8 1.0
PA J:ANP300 4.4 51.8 1.0
O2B J:ANP300 4.4 51.8 1.0
OD1 J:ASP144 4.5 51.8 1.0
O2A J:ANP300 4.7 51.8 1.0
CG J:ASP144 4.8 51.8 1.0

Reference:

J.U.Park, A.W.Tsai, T.H.Chen, J.E.Peters, E.H.Kellogg. Mechanistic Details of Crispr-Associated Transposon Recruitment and Integration Revealed By Cryo-Em. Proc.Natl.Acad.Sci.Usa V. 119 90119 2022.
ISSN: ESSN 1091-6490
PubMed: 35914146
DOI: 10.1073/PNAS.2202590119
Page generated: Thu Oct 3 08:54:56 2024

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