Magnesium in PDB 7swf: Cryo-Em Structure of Arabidopsis AGO10-Guide-Target Rna Complex in A Central Duplex Conformation

The binding sites of Magnesium atom in the Cryo-Em Structure of Arabidopsis AGO10-Guide-Target Rna Complex in A Central Duplex Conformation (pdb code 7swf). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Cryo-Em Structure of Arabidopsis AGO10-Guide-Target Rna Complex in A Central Duplex Conformation, PDB code: 7swf:

Magnesium binding site 1 out of 1 in the Cryo-Em Structure of Arabidopsis AGO10-Guide-Target Rna Complex in A Central Duplex Conformation


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Cryo-Em Structure of Arabidopsis AGO10-Guide-Target Rna Complex in A Central Duplex Conformation within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg1001 b:38.3 occ:1.00 OP1 D:U12 2.0 69.3 1.0 OD2 A:ASP709 2.0 34.8 1.0 OD1 A:ASP709 2.1 34.8 1.0 CG A:ASP709 2.3 34.8 1.0 CB A:HIS935 2.9 42.7 1.0 ND1 A:HIS935 3.0 42.7 1.0 CG A:HIS935 3.2 42.7 1.0 P D:U12 3.5 69.3 1.0 CB A:ASP709 3.7 34.8 1.0 CA A:HIS935 3.8 42.7 1.0 CE1 A:HIS935 4.1 42.7 1.0 O A:VAL710 4.1 40.4 1.0 O3' D:G11 4.2 70.0 1.0 O5' D:U12 4.3 69.3 1.0 CD2 A:HIS935 4.3 42.7 1.0 C5' D:U12 4.4 69.3 1.0 OP2 D:U12 4.5 69.3 1.0 N A:HIS935 4.7 42.7 1.0 NE2 A:HIS935 4.7 42.7 1.0 CA A:ASP709 4.8 34.8 1.0 N A:VAL710 4.8 40.4 1.0 C A:HIS935 4.9 42.7 1.0

Y.Xiao, I.J.Macrae. The Molecular Mechanism of Microrna Duplex Selectivity of Arabidopsis ARGONAUTE10. Nucleic Acids Res. V. 50 10041 2022.
ISSN: ESSN 1362-4962
PubMed: 35801914
DOI: 10.1093/NAR/GKAC571