Magnesium in PDB 7swq: Cryo-Em Structure of Arabidopsis AGO10-Guide-Target Rna Complex in A Bent Duplex Conformation

The binding sites of Magnesium atom in the Cryo-Em Structure of Arabidopsis AGO10-Guide-Target Rna Complex in A Bent Duplex Conformation (pdb code 7swq). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Cryo-Em Structure of Arabidopsis AGO10-Guide-Target Rna Complex in A Bent Duplex Conformation, PDB code: 7swq:

Magnesium binding site 1 out of 1 in the Cryo-Em Structure of Arabidopsis AGO10-Guide-Target Rna Complex in A Bent Duplex Conformation


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Cryo-Em Structure of Arabidopsis AGO10-Guide-Target Rna Complex in A Bent Duplex Conformation within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg1001 b:13.5 occ:1.00 OD2 A:ASP709 1.9 10.6 1.0 ND1 A:HIS935 2.1 10.4 1.0 CG A:HIS935 2.6 10.4 1.0 CB A:HIS935 2.6 10.4 1.0 CG A:ASP709 2.7 10.6 1.0 OD1 A:ASP709 3.0 10.6 1.0 CE1 A:HIS935 3.2 10.4 1.0 CA A:HIS935 3.2 10.4 1.0 CD2 A:HIS935 3.7 10.4 1.0 NE2 A:HIS935 4.0 10.4 1.0 CB A:ASP709 4.1 10.6 1.0 N A:HIS935 4.2 10.4 1.0 C A:HIS935 4.3 10.4 1.0 O A:HIS935 4.4 10.4 1.0 C A:ALA934 5.0 12.2 1.0

Y.Xiao, S.Maeda, T.Otomo, I.Macrae. Structural Basis For Rna Silencing in Plants To Be Published.