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Magnesium in PDB 7sx9: T-Plastin-F-Actin Complex, Anti-Parallel Bundled State

Magnesium Binding Sites:

The binding sites of Magnesium atom in the T-Plastin-F-Actin Complex, Anti-Parallel Bundled State (pdb code 7sx9). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 6 binding sites of Magnesium where determined in the T-Plastin-F-Actin Complex, Anti-Parallel Bundled State, PDB code: 7sx9:
Jump to Magnesium binding site number: 1; 2; 3; 4; 5; 6;

Magnesium binding site 1 out of 6 in 7sx9

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Magnesium binding site 1 out of 6 in the T-Plastin-F-Actin Complex, Anti-Parallel Bundled State


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of T-Plastin-F-Actin Complex, Anti-Parallel Bundled State within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mg402

b:777.0
occ:1.00
O3B B:ADP401 1.8 880.7 1.0
O2B B:ADP401 1.9 880.7 1.0
PB B:ADP401 2.2 880.7 1.0
O3A B:ADP401 2.9 880.7 1.0
O1B B:ADP401 3.6 880.7 1.0
CA B:GLY156 3.7 690.1 1.0
CA B:GLY13 3.8 749.0 1.0
O2A B:ADP401 3.8 880.7 1.0
PA B:ADP401 3.9 880.7 1.0
N B:ASP157 4.0 827.4 1.0
N B:SER14 4.2 854.4 1.0
C B:GLY156 4.4 690.1 1.0
NZ B:LYS18 4.5 611.1 1.0
C B:GLY13 4.6 749.0 1.0
O1A B:ADP401 4.6 880.7 1.0
N B:GLY156 4.6 690.1 1.0
OE1 B:GLN137 4.8 204.3 1.0
N B:GLY13 4.9 749.0 1.0

Magnesium binding site 2 out of 6 in 7sx9

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Magnesium binding site 2 out of 6 in the T-Plastin-F-Actin Complex, Anti-Parallel Bundled State


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of T-Plastin-F-Actin Complex, Anti-Parallel Bundled State within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg402

b:1000.0
occ:1.00
O2B A:ADP401 1.8 1000.0 1.0
O3B A:ADP401 1.9 1000.0 1.0
PB A:ADP401 2.1 1000.0 1.0
O3A A:ADP401 2.9 1000.0 1.0
O1B A:ADP401 3.5 1000.0 1.0
CA A:GLY156 3.7 1000.0 1.0
CA A:GLY13 3.7 1000.0 1.0
N A:ASP157 3.9 1000.0 1.0
N A:SER14 4.0 1000.0 1.0
PA A:ADP401 4.2 1000.0 1.0
C A:GLY156 4.4 1000.0 1.0
O1A A:ADP401 4.4 1000.0 1.0
C A:GLY13 4.5 1000.0 1.0
NZ A:LYS18 4.5 1000.0 1.0
N A:GLY156 4.6 1000.0 1.0
O2A A:ADP401 4.7 1000.0 1.0
N A:GLY13 4.9 1000.0 1.0

Magnesium binding site 3 out of 6 in 7sx9

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Magnesium binding site 3 out of 6 in the T-Plastin-F-Actin Complex, Anti-Parallel Bundled State


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of T-Plastin-F-Actin Complex, Anti-Parallel Bundled State within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Mg402

b:699.6
occ:1.00
O3B C:ADP401 1.8 613.1 1.0
O2B C:ADP401 1.9 613.1 1.0
PB C:ADP401 2.1 613.1 1.0
O3A C:ADP401 2.9 613.1 1.0
O1B C:ADP401 3.5 613.1 1.0
CA C:GLY156 3.7 743.0 1.0
CA C:GLY13 3.8 486.2 1.0
O2A C:ADP401 3.8 613.1 1.0
PA C:ADP401 3.9 613.1 1.0
N C:ASP157 4.0 732.0 1.0
N C:SER14 4.1 565.9 1.0
C C:GLY156 4.4 743.0 1.0
NZ C:LYS18 4.4 506.6 1.0
C C:GLY13 4.5 486.2 1.0
N C:GLY156 4.6 743.0 1.0
O1A C:ADP401 4.6 613.1 1.0
N C:GLY13 5.0 486.2 1.0
OE1 C:GLN137 5.0 660.7 1.0

Magnesium binding site 4 out of 6 in 7sx9

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Magnesium binding site 4 out of 6 in the T-Plastin-F-Actin Complex, Anti-Parallel Bundled State


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 4 of T-Plastin-F-Actin Complex, Anti-Parallel Bundled State within 5.0Å range:
probe atom residue distance (Å) B Occ
G:Mg402

b:799.5
occ:1.00
O1B G:ADP401 1.8 824.4 1.0
O2B G:ADP401 1.9 824.4 1.0
PB G:ADP401 2.1 824.4 1.0
O3A G:ADP401 2.8 824.4 1.0
O3B G:ADP401 3.5 824.4 1.0
CA G:GLY156 3.6 675.9 1.0
O1A G:ADP401 3.7 824.4 1.0
PA G:ADP401 3.8 824.4 1.0
CA G:GLY13 3.8 880.1 1.0
N G:ASP157 3.9 785.4 1.0
N G:SER14 4.1 933.3 1.0
C G:GLY156 4.3 675.9 1.0
N G:GLY156 4.5 675.9 1.0
O2A G:ADP401 4.5 824.4 1.0
C G:GLY13 4.6 880.1 1.0
NZ G:LYS18 4.6 567.0 1.0
OE1 G:GLN137 4.9 387.7 1.0

Magnesium binding site 5 out of 6 in 7sx9

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Magnesium binding site 5 out of 6 in the T-Plastin-F-Actin Complex, Anti-Parallel Bundled State


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 5 of T-Plastin-F-Actin Complex, Anti-Parallel Bundled State within 5.0Å range:
probe atom residue distance (Å) B Occ
E:Mg402

b:1000.0
occ:1.00
O1B E:ADP401 1.8 1000.0 1.0
O3B E:ADP401 1.9 1000.0 1.0
PB E:ADP401 2.1 1000.0 1.0
O3A E:ADP401 2.8 1000.0 1.0
O2B E:ADP401 3.5 1000.0 1.0
CA E:GLY156 3.5 1000.0 1.0
N E:ASP157 3.7 1000.0 1.0
CA E:GLY13 3.8 1000.0 1.0
N E:SER14 4.0 1000.0 1.0
PA E:ADP401 4.1 1000.0 1.0
C E:GLY156 4.2 1000.0 1.0
O2A E:ADP401 4.3 1000.0 1.0
N E:GLY156 4.4 1000.0 1.0
C E:GLY13 4.5 1000.0 1.0
NZ E:LYS18 4.6 1000.0 1.0
O1A E:ADP401 4.6 1000.0 1.0
CA E:ASP157 4.9 1000.0 1.0

Magnesium binding site 6 out of 6 in 7sx9

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Magnesium binding site 6 out of 6 in the T-Plastin-F-Actin Complex, Anti-Parallel Bundled State


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 6 of T-Plastin-F-Actin Complex, Anti-Parallel Bundled State within 5.0Å range:
probe atom residue distance (Å) B Occ
H:Mg402

b:497.2
occ:1.00
O1B H:ADP401 1.8 510.4 1.0
O2B H:ADP401 1.9 510.4 1.0
PB H:ADP401 2.1 510.4 1.0
O3A H:ADP401 2.8 510.4 1.0
O3B H:ADP401 3.5 510.4 1.0
CA H:GLY156 3.6 524.4 1.0
O1A H:ADP401 3.7 510.4 1.0
CA H:GLY13 3.8 457.0 1.0
PA H:ADP401 3.8 510.4 1.0
N H:ASP157 3.9 584.9 1.0
N H:SER14 4.0 540.9 1.0
C H:GLY156 4.3 524.4 1.0
NZ H:LYS18 4.4 385.1 1.0
C H:GLY13 4.5 457.0 1.0
N H:GLY156 4.5 524.4 1.0
O2A H:ADP401 4.5 510.4 1.0
OE1 H:GLN137 4.9 684.7 1.0
N H:GLY13 5.0 457.0 1.0

Reference:

L.Mei, M.J.Reynolds, D.Garbett, R.Gong, T.Meyer, G.M.Alushin. Structural Mechanism For Bidirectional Actin Cross-Linking By T-Plastin. Proc.Natl.Acad.Sci.Usa V. 119 70119 2022.
ISSN: ESSN 1091-6490
PubMed: 36067297
DOI: 10.1073/PNAS.2205370119
Page generated: Thu Oct 3 08:56:09 2024

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