Magnesium in PDB 7sxa: T-Plastin-F-Actin Complex, Pre-Bundling Intermediate State

The binding sites of Magnesium atom in the T-Plastin-F-Actin Complex, Pre-Bundling Intermediate State (pdb code 7sxa). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 3 binding sites of Magnesium where determined in the T-Plastin-F-Actin Complex, Pre-Bundling Intermediate State, PDB code: 7sxa:
Jump to Magnesium binding site number: 1; 2; 3;

Magnesium binding site 1 out of 3 in the T-Plastin-F-Actin Complex, Pre-Bundling Intermediate State


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of T-Plastin-F-Actin Complex, Pre-Bundling Intermediate State within 5.0Å range: probe atom residue distance (Å) B Occ C:Mg402 b:26.1 occ:1.00 O3B C:ADP401 2.0 38.4 1.0 PB C:ADP401 3.4 38.4 1.0 O1B C:ADP401 3.9 38.4 1.0 O2A C:ADP401 3.9 38.4 1.0 OE1 C:GLN137 4.2 352.9 1.0 O3A C:ADP401 4.3 38.4 1.0 OD2 C:ASP11 4.3 370.9 1.0 O2B C:ADP401 4.4 38.4 1.0 OD1 C:ASP154 4.5 346.4 1.0 CA C:GLY156 4.6 356.4 1.0 CD C:GLN137 4.6 352.9 1.0 OD2 C:ASP154 4.6 346.4 1.0 PA C:ADP401 4.6 38.4 1.0 CA C:GLY13 4.6 369.8 1.0 OD1 C:ASP11 4.7 370.9 1.0 CG2 C:VAL339 4.8 378.7 1.0 NZ C:LYS18 4.9 363.9 1.0 NE2 C:GLN137 4.9 352.9 1.0 CG C:ASP11 5.0 370.9 1.0 CG C:ASP154 5.0 346.4 1.0

Magnesium binding site 2 out of 3 in the T-Plastin-F-Actin Complex, Pre-Bundling Intermediate State


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of T-Plastin-F-Actin Complex, Pre-Bundling Intermediate State within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg402 b:27.6 occ:1.00 O2B B:ADP401 2.2 38.4 1.0 CA B:GLY13 2.3 124.1 1.0 O1B B:ADP401 2.4 38.4 1.0 NZ B:LYS18 2.4 111.2 1.0 PB B:ADP401 2.6 38.4 1.0 N B:GLY13 2.9 124.1 1.0 CE B:LYS18 3.2 111.2 1.0 O B:LEU16 3.5 123.4 1.0 O3B B:ADP401 3.5 38.4 1.0 C B:GLY13 3.5 124.1 1.0 N B:SER14 4.0 138.1 1.0 C B:ASN12 4.0 97.1 1.0 O3A B:ADP401 4.0 38.4 1.0 O1A B:ADP401 4.0 38.4 1.0 OD2 B:ASP11 4.1 104.5 1.0 OD1 B:ASP11 4.1 104.5 1.0 CG B:ASP11 4.3 104.5 1.0 O B:ASP11 4.4 104.5 1.0 O B:GLY13 4.5 124.1 1.0 CD B:LYS18 4.5 111.2 1.0 O B:ASN12 4.6 97.1 1.0 C B:LEU16 4.6 123.4 1.0 PA B:ADP401 4.7 38.4 1.0 N B:LEU16 4.7 123.4 1.0 C B:ASP11 4.9 104.5 1.0

Magnesium binding site 3 out of 3 in the T-Plastin-F-Actin Complex, Pre-Bundling Intermediate State


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of T-Plastin-F-Actin Complex, Pre-Bundling Intermediate State within 5.0Å range: probe atom residue distance (Å) B Occ D:Mg402 b:26.7 occ:1.00 O3B D:ADP401 2.2 38.4 1.0 O2A D:ADP401 2.6 38.4 1.0 PA D:ADP401 3.4 38.4 1.0 PB D:ADP401 3.5 38.4 1.0 O3A D:ADP401 3.5 38.4 1.0 O1A D:ADP401 4.0 38.4 1.0 OD2 D:ASP11 4.1 126.9 1.0 NZ D:LYS18 4.1 134.2 1.0 O1B D:ADP401 4.4 38.4 1.0 CA D:GLY156 4.4 128.8 1.0 CA D:GLY301 4.4 125.2 1.0 CE D:LYS18 4.4 134.2 1.0 OD1 D:ASP154 4.5 127.3 1.0 O2B D:ADP401 4.5 38.4 1.0 O5' D:ADP401 4.9 38.4 1.0 CG2 D:VAL339 4.9 109.2 1.0 N D:GLY302 5.0 123.8 1.0

L.Mei, M.J.Reynolds, D.Garbett, R.Gong, T.Meyer, G.M.Alushin. Structural Mechanism For Bidirectional Actin Cross-Linking By T-Plastin. Proc.Natl.Acad.Sci.Usa V. 119 70119 2022.
ISSN: ESSN 1091-6490
PubMed: 36067297
DOI: 10.1073/PNAS.2205370119