Magnesium in PDB 7t5m: Structure of Hla-A*02:01-Flptpeelgllgpprpqvla Complex

The structure of Structure of Hla-A*02:01-Flptpeelgllgpprpqvla Complex, PDB code: 7t5m was solved by S.Gras, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	43.80 / 1.67
Space group	P 2 21 21
Cell size a, b, c (Å), α, β, γ (°)	70.178, 99.903, 135.464, 90, 90, 90
R / Rfree (%)	18.7 / 20.8

The binding sites of Magnesium atom in the Structure of Hla-A*02:01-Flptpeelgllgpprpqvla Complex (pdb code 7t5m). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the Structure of Hla-A*02:01-Flptpeelgllgpprpqvla Complex, PDB code: 7t5m:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in the Structure of Hla-A*02:01-Flptpeelgllgpprpqvla Complex


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Structure of Hla-A*02:01-Flptpeelgllgpprpqvla Complex within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg302 b:25.0 occ:1.00 O E:HOH113 2.6 13.7 1.0 CD2 A:HIS70 2.8 14.2 1.0 OG1 A:THR73 3.1 26.8 1.0 CB A:THR73 3.1 27.5 1.0 CG2 A:THR73 3.1 28.8 1.0 CB E:PRO5 3.4 15.4 1.0 NE2 A:HIS70 3.7 15.4 1.0 CA E:PRO5 3.7 13.0 1.0 CA A:HIS70 3.7 10.3 1.0 CG A:HIS70 3.7 13.6 1.0 CE1 A:HIS74 3.8 15.9 1.0 CG E:PRO5 3.9 20.3 1.0 CB A:HIS70 4.1 11.2 1.0 CD2 E:LEU10 4.1 20.6 1.0 ND1 A:HIS74 4.2 16.7 1.0 O A:ALA69 4.3 14.2 1.0 N A:HIS70 4.4 11.9 1.0 O A:HIS70 4.5 14.9 1.0 O E:PRO5 4.6 15.3 1.0 C A:ALA69 4.6 15.3 1.0 C E:PRO5 4.6 15.8 1.0 C A:HIS70 4.6 15.0 1.0 N E:PRO5 4.6 13.5 1.0 CA A:THR73 4.7 17.4 1.0 CE1 A:HIS70 4.7 14.3 1.0 O A:HOH673 4.8 22.6 1.0 ND1 A:HIS70 4.8 15.9 1.0 NE2 A:HIS74 4.9 16.5 1.0 CD E:PRO5 4.9 16.5 1.0

Magnesium binding site 2 out of 2 in the Structure of Hla-A*02:01-Flptpeelgllgpprpqvla Complex


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Structure of Hla-A*02:01-Flptpeelgllgpprpqvla Complex within 5.0Å range: probe atom residue distance (Å) B Occ C:Mg301 b:29.6 occ:1.00 CD2 C:HIS188 2.6 20.1 1.0 O C:LYS186 2.9 12.7 1.0 O C:HOH826 3.0 31.2 1.0 O C:HOH680 3.1 30.7 1.0 C C:LYS186 3.3 13.4 1.0 CG C:HIS188 3.5 18.7 1.0 C C:THR187 3.6 18.2 1.0 N C:THR187 3.6 10.9 1.0 NE2 C:HIS188 3.6 20.5 1.0 CD1 C:LEU206 3.6 15.8 1.0 N C:HIS188 3.7 13.8 1.0 CA C:THR187 3.8 10.8 1.0 CB C:HIS188 3.9 15.1 1.0 CB C:LYS186 3.9 13.0 1.0 O C:THR187 3.9 19.5 1.0 CA C:LYS186 4.2 9.6 1.0 CG C:LEU206 4.3 14.2 1.0 CA C:HIS188 4.4 14.1 1.0 CB C:LEU206 4.4 9.6 1.0 O C:HOH750 4.6 51.3 1.0 CE1 C:HIS188 4.7 19.6 1.0 ND1 C:HIS188 4.7 20.4 1.0 O C:HOH833 4.9 52.8 1.0 CB C:TRP204 4.9 11.9 1.0 O C:TRP204 4.9 13.0 1.0 N C:LEU206 4.9 8.6 1.0

S.Gras, S.Gras. N/A N/A.