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Magnesium in PDB 7t5m: Structure of Hla-A*02:01-Flptpeelgllgpprpqvla Complex

Protein crystallography data

The structure of Structure of Hla-A*02:01-Flptpeelgllgpprpqvla Complex, PDB code: 7t5m was solved by S.Gras, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 43.80 / 1.67
Space group P 2 21 21
Cell size a, b, c (Å), α, β, γ (°) 70.178, 99.903, 135.464, 90, 90, 90
R / Rfree (%) 18.7 / 20.8

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Structure of Hla-A*02:01-Flptpeelgllgpprpqvla Complex (pdb code 7t5m). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the Structure of Hla-A*02:01-Flptpeelgllgpprpqvla Complex, PDB code: 7t5m:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in 7t5m

Go back to Magnesium Binding Sites List in 7t5m
Magnesium binding site 1 out of 2 in the Structure of Hla-A*02:01-Flptpeelgllgpprpqvla Complex


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Structure of Hla-A*02:01-Flptpeelgllgpprpqvla Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg302

b:25.0
occ:1.00
O E:HOH113 2.6 13.7 1.0
CD2 A:HIS70 2.8 14.2 1.0
OG1 A:THR73 3.1 26.8 1.0
CB A:THR73 3.1 27.5 1.0
CG2 A:THR73 3.1 28.8 1.0
CB E:PRO5 3.4 15.4 1.0
NE2 A:HIS70 3.7 15.4 1.0
CA E:PRO5 3.7 13.0 1.0
CA A:HIS70 3.7 10.3 1.0
CG A:HIS70 3.7 13.6 1.0
CE1 A:HIS74 3.8 15.9 1.0
CG E:PRO5 3.9 20.3 1.0
CB A:HIS70 4.1 11.2 1.0
CD2 E:LEU10 4.1 20.6 1.0
ND1 A:HIS74 4.2 16.7 1.0
O A:ALA69 4.3 14.2 1.0
N A:HIS70 4.4 11.9 1.0
O A:HIS70 4.5 14.9 1.0
O E:PRO5 4.6 15.3 1.0
C A:ALA69 4.6 15.3 1.0
C E:PRO5 4.6 15.8 1.0
C A:HIS70 4.6 15.0 1.0
N E:PRO5 4.6 13.5 1.0
CA A:THR73 4.7 17.4 1.0
CE1 A:HIS70 4.7 14.3 1.0
O A:HOH673 4.8 22.6 1.0
ND1 A:HIS70 4.8 15.9 1.0
NE2 A:HIS74 4.9 16.5 1.0
CD E:PRO5 4.9 16.5 1.0

Magnesium binding site 2 out of 2 in 7t5m

Go back to Magnesium Binding Sites List in 7t5m
Magnesium binding site 2 out of 2 in the Structure of Hla-A*02:01-Flptpeelgllgpprpqvla Complex


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Structure of Hla-A*02:01-Flptpeelgllgpprpqvla Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Mg301

b:29.6
occ:1.00
CD2 C:HIS188 2.6 20.1 1.0
O C:LYS186 2.9 12.7 1.0
O C:HOH826 3.0 31.2 1.0
O C:HOH680 3.1 30.7 1.0
C C:LYS186 3.3 13.4 1.0
CG C:HIS188 3.5 18.7 1.0
C C:THR187 3.6 18.2 1.0
N C:THR187 3.6 10.9 1.0
NE2 C:HIS188 3.6 20.5 1.0
CD1 C:LEU206 3.6 15.8 1.0
N C:HIS188 3.7 13.8 1.0
CA C:THR187 3.8 10.8 1.0
CB C:HIS188 3.9 15.1 1.0
CB C:LYS186 3.9 13.0 1.0
O C:THR187 3.9 19.5 1.0
CA C:LYS186 4.2 9.6 1.0
CG C:LEU206 4.3 14.2 1.0
CA C:HIS188 4.4 14.1 1.0
CB C:LEU206 4.4 9.6 1.0
O C:HOH750 4.6 51.3 1.0
CE1 C:HIS188 4.7 19.6 1.0
ND1 C:HIS188 4.7 20.4 1.0
O C:HOH833 4.9 52.8 1.0
CB C:TRP204 4.9 11.9 1.0
O C:TRP204 4.9 13.0 1.0
N C:LEU206 4.9 8.6 1.0

Reference:

S.Gras, S.Gras. N/A N/A.
Page generated: Thu Oct 3 09:03:09 2024

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