Atomistry » Magnesium » PDB 7t21-7tgn » 7t5m
Atomistry »
  Magnesium »
    PDB 7t21-7tgn »
      7t5m »

Magnesium in PDB 7t5m: Structure of Hla-A*02:01-Flptpeelgllgpprpqvla Complex

Protein crystallography data

The structure of Structure of Hla-A*02:01-Flptpeelgllgpprpqvla Complex, PDB code: 7t5m was solved by S.Gras, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 43.80 / 1.67
Space group P 2 21 21
Cell size a, b, c (Å), α, β, γ (°) 70.178, 99.903, 135.464, 90, 90, 90
R / Rfree (%) 18.7 / 20.8

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Structure of Hla-A*02:01-Flptpeelgllgpprpqvla Complex (pdb code 7t5m). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the Structure of Hla-A*02:01-Flptpeelgllgpprpqvla Complex, PDB code: 7t5m:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in 7t5m

Go back to Magnesium Binding Sites List in 7t5m
Magnesium binding site 1 out of 2 in the Structure of Hla-A*02:01-Flptpeelgllgpprpqvla Complex


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Structure of Hla-A*02:01-Flptpeelgllgpprpqvla Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg302

b:25.0
occ:1.00
O E:HOH113 2.6 13.7 1.0
CD2 A:HIS70 2.8 14.2 1.0
OG1 A:THR73 3.1 26.8 1.0
CB A:THR73 3.1 27.5 1.0
CG2 A:THR73 3.1 28.8 1.0
CB E:PRO5 3.4 15.4 1.0
NE2 A:HIS70 3.7 15.4 1.0
CA E:PRO5 3.7 13.0 1.0
CA A:HIS70 3.7 10.3 1.0
CG A:HIS70 3.7 13.6 1.0
CE1 A:HIS74 3.8 15.9 1.0
CG E:PRO5 3.9 20.3 1.0
CB A:HIS70 4.1 11.2 1.0
CD2 E:LEU10 4.1 20.6 1.0
ND1 A:HIS74 4.2 16.7 1.0
O A:ALA69 4.3 14.2 1.0
N A:HIS70 4.4 11.9 1.0
O A:HIS70 4.5 14.9 1.0
O E:PRO5 4.6 15.3 1.0
C A:ALA69 4.6 15.3 1.0
C E:PRO5 4.6 15.8 1.0
C A:HIS70 4.6 15.0 1.0
N E:PRO5 4.6 13.5 1.0
CA A:THR73 4.7 17.4 1.0
CE1 A:HIS70 4.7 14.3 1.0
O A:HOH673 4.8 22.6 1.0
ND1 A:HIS70 4.8 15.9 1.0
NE2 A:HIS74 4.9 16.5 1.0
CD E:PRO5 4.9 16.5 1.0

Magnesium binding site 2 out of 2 in 7t5m

Go back to Magnesium Binding Sites List in 7t5m
Magnesium binding site 2 out of 2 in the Structure of Hla-A*02:01-Flptpeelgllgpprpqvla Complex


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Structure of Hla-A*02:01-Flptpeelgllgpprpqvla Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Mg301

b:29.6
occ:1.00
CD2 C:HIS188 2.6 20.1 1.0
O C:LYS186 2.9 12.7 1.0
O C:HOH826 3.0 31.2 1.0
O C:HOH680 3.1 30.7 1.0
C C:LYS186 3.3 13.4 1.0
CG C:HIS188 3.5 18.7 1.0
C C:THR187 3.6 18.2 1.0
N C:THR187 3.6 10.9 1.0
NE2 C:HIS188 3.6 20.5 1.0
CD1 C:LEU206 3.6 15.8 1.0
N C:HIS188 3.7 13.8 1.0
CA C:THR187 3.8 10.8 1.0
CB C:HIS188 3.9 15.1 1.0
CB C:LYS186 3.9 13.0 1.0
O C:THR187 3.9 19.5 1.0
CA C:LYS186 4.2 9.6 1.0
CG C:LEU206 4.3 14.2 1.0
CA C:HIS188 4.4 14.1 1.0
CB C:LEU206 4.4 9.6 1.0
O C:HOH750 4.6 51.3 1.0
CE1 C:HIS188 4.7 19.6 1.0
ND1 C:HIS188 4.7 20.4 1.0
O C:HOH833 4.9 52.8 1.0
CB C:TRP204 4.9 11.9 1.0
O C:TRP204 4.9 13.0 1.0
N C:LEU206 4.9 8.6 1.0

Reference:

S.Gras, S.Gras. N/A N/A.
Page generated: Thu Oct 3 09:03:09 2024

Last articles

Sr in 1SFC
Sr in 1OQ7
Sr in 1U3E
Sr in 1VC0
Sr in 1F1T
Sr in 1J8G
Sr in 1NVY
Sr in 1TJM
Sr in 1NUV
Sr in 1M6G
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy