Magnesium in PDB 7t5q: Cryo-Em Structure of An ARP2/3 Complex Mini-Branch Capped By Capping Protein (Capz)

The binding sites of Magnesium atom in the Cryo-Em Structure of An ARP2/3 Complex Mini-Branch Capped By Capping Protein (Capz) (pdb code 7t5q). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 3 binding sites of Magnesium where determined in the Cryo-Em Structure of An ARP2/3 Complex Mini-Branch Capped By Capping Protein (Capz), PDB code: 7t5q:
Jump to Magnesium binding site number: 1; 2; 3;

Magnesium binding site 1 out of 3 in the Cryo-Em Structure of An ARP2/3 Complex Mini-Branch Capped By Capping Protein (Capz)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Cryo-Em Structure of An ARP2/3 Complex Mini-Branch Capped By Capping Protein (Capz) within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg501 b:62.7 occ:1.00 O1B A:ATP502 2.8 70.7 1.0 O2G A:ATP502 3.6 66.3 1.0 OD1 A:ASP169 4.0 78.1 1.0 PB A:ATP502 4.2 54.0 1.0 O A:SER170 4.5 75.5 1.0 OE1 A:GLN144 4.6 73.3 1.0 CG2 A:VAL377 4.7 61.5 1.0 OD1 A:ASP11 4.7 77.1 1.0 O3B A:ATP502 4.7 68.8 1.0 O3A A:ATP502 4.7 59.2 1.0 O1A A:ATP502 4.8 69.6 1.0 PG A:ATP502 4.8 78.0 1.0

Magnesium binding site 2 out of 3 in the Cryo-Em Structure of An ARP2/3 Complex Mini-Branch Capped By Capping Protein (Capz)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Cryo-Em Structure of An ARP2/3 Complex Mini-Branch Capped By Capping Protein (Capz) within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg501 b:55.4 occ:1.00 O1B B:ATP502 2.0 68.8 1.0 PB B:ATP502 2.9 55.3 1.0 O2B B:ATP502 3.1 58.8 1.0 O1G B:ATP502 3.1 56.2 1.0 O3B B:ATP502 3.5 54.8 1.0 PG B:ATP502 3.8 68.3 1.0 OD2 B:ASP12 4.1 73.3 1.0 O3A B:ATP502 4.3 43.5 1.0 OE1 B:GLN141 4.3 68.6 1.0 O2G B:ATP502 4.4 62.5 1.0 OD1 B:ASP12 4.6 75.4 1.0 O1A B:ATP502 4.8 60.3 1.0 CG B:ASP12 4.8 71.9 1.0 NZ B:LYS19 4.9 61.7 1.0 CG2 B:VAL354 5.0 60.8 1.0 NE2 B:GLN141 5.0 68.3 1.0

Magnesium binding site 3 out of 3 in the Cryo-Em Structure of An ARP2/3 Complex Mini-Branch Capped By Capping Protein (Capz)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of Cryo-Em Structure of An ARP2/3 Complex Mini-Branch Capped By Capping Protein (Capz) within 5.0Å range: probe atom residue distance (Å) B Occ H:Mg402 b:41.0 occ:1.00 O2B H:ADP401 2.0 65.8 1.0 O1B H:ADP401 2.0 61.3 1.0 PB H:ADP401 2.4 62.1 1.0 O3A H:ADP401 3.2 73.9 1.0 O1A H:ADP401 3.6 61.0 1.0 O3B H:ADP401 3.8 53.5 1.0 PA H:ADP401 3.9 69.4 1.0 O2A H:ADP401 4.5 68.9 1.0 CA H:GLY156 4.8 58.7 1.0 OE1 H:GLN137 4.8 78.1 1.0 NZ H:LYS18 4.9 77.4 1.0 OD2 H:ASP11 5.0 93.3 1.0

G.Rebowski, T.Van Eeuwen, R.Dominguez, M.Boczkowska. Cryo-Em Structure of An ARP2/3 Complex Mini-Branch Capped By Capping Protein (Capz) To Be Published.