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Magnesium in PDB 7tcd: LOV2-Darpin Fusion: D13

Protein crystallography data

The structure of LOV2-Darpin Fusion: D13, PDB code: 7tcd was solved by P.Mittl, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 45.07 / 1.70
Space group C 1 2 1
Cell size a, b, c (Å), α, β, γ (°) 138.504, 47.902, 78.068, 90, 107.56, 90
R / Rfree (%) 18.1 / 25.2

Other elements in 7tcd:

The structure of LOV2-Darpin Fusion: D13 also contains other interesting chemical elements:

Chlorine (Cl) 2 atoms

Magnesium Binding Sites:

The binding sites of Magnesium atom in the LOV2-Darpin Fusion: D13 (pdb code 7tcd). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the LOV2-Darpin Fusion: D13, PDB code: 7tcd:

Magnesium binding site 1 out of 1 in 7tcd

Go back to Magnesium Binding Sites List in 7tcd
Magnesium binding site 1 out of 1 in the LOV2-Darpin Fusion: D13


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of LOV2-Darpin Fusion: D13 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg902

b:15.8
occ:1.00
O A:HOH1024 3.0 26.0 1.0
ND2 A:ASN425 3.1 25.6 1.0
ND2 A:ASN449 3.1 19.8 1.0
O3' A:FMN901 3.1 20.9 1.0
NH1 A:ARG467 3.3 29.1 1.0
CD1 A:ILE470 3.7 29.7 1.0
CB A:ASN425 3.7 24.3 1.0
CG A:ASN425 3.9 24.7 1.0
C3' A:FMN901 4.0 19.1 1.0
O2' A:FMN901 4.0 18.2 1.0
O A:HOH1163 4.0 21.3 1.0
CG A:ASN449 4.2 21.5 1.0
CZ A:ARG467 4.2 34.4 1.0
NH2 A:ARG467 4.2 35.0 1.0
OD1 A:ASN449 4.4 21.3 1.0
CG2 A:ILE470 4.5 29.1 1.0
C2' A:FMN901 4.6 18.9 1.0
C8M A:FMN901 4.7 22.1 1.0
O A:ASN425 4.7 23.4 1.0
NH2 A:ARG451 4.7 19.2 1.0
O A:HOH1095 4.8 22.6 1.0
O A:ASP424 4.8 23.5 1.0
O5' A:FMN901 4.8 19.1 1.0
OD1 A:ASP424 4.9 20.8 1.0
C9 A:FMN901 4.9 20.0 1.0
CG1 A:ILE470 4.9 28.1 1.0
CA A:ASN425 5.0 23.9 1.0

Reference:

P.Mittl, A.Plueckthun. LOV2-Darpin Fusion: D13 To Be Published.
Page generated: Thu Jul 27 19:25:26 2023

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