Magnesium in PDB 7tcy: The Ubiquitin-Associated Domain of Human Thirty-Eight Negative Kinase I

Enzymatic activity of The Ubiquitin-Associated Domain of Human Thirty-Eight Negative Kinase I

All present enzymatic activity of The Ubiquitin-Associated Domain of Human Thirty-Eight Negative Kinase I:
2.7.10.2;

Protein crystallography data

The structure of The Ubiquitin-Associated Domain of Human Thirty-Eight Negative Kinase I, PDB code: 7tcy was solved by S.Nawarathnage, R.D.Bunn, C.Stewart, T.Doukov, D.J.Moody, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

*Resolution Low / High (Å)*	44.03 / 1.54
*Space group*	P 2₁ 2₁ 2
*Cell size a, b, c (Å), α, β, γ (°)*	53.734, 88.07, 26.497, 90, 90, 90
*R / R_free (%)*	18.9 / 21.4

Other elements in 7tcy:

The structure of The Ubiquitin-Associated Domain of Human Thirty-Eight Negative Kinase I also contains other interesting chemical elements:

Chlorine

(Cl)

2 atoms

Magnesium Binding Sites:

The binding sites of Magnesium atom in the The Ubiquitin-Associated Domain of Human Thirty-Eight Negative Kinase I (pdb code 7tcy). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the The Ubiquitin-Associated Domain of Human Thirty-Eight Negative Kinase I, PDB code: 7tcy:

Magnesium binding site 1 out of 1 in 7tcy

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Magnesium Binding Sites List in 7tcy

Magnesium binding site 1 out of 1 in the The Ubiquitin-Associated Domain of Human Thirty-Eight Negative Kinase I

Mono view

Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of The Ubiquitin-Associated Domain of Human Thirty-Eight Negative Kinase I within 5.0Å range:

probe	atom	residue	distance (Å)	B	Occ
A:Mg703 b:40.3 occ:1.00	O1	A:PO4702	2.8	54.0	1.0
	HE1	A:HIS607	3.0	55.9	1.0
	O4	A:PO4702	3.3	57.1	1.0
	P	A:PO4702	3.3	65.3	1.0
	HD1	A:HIS607	3.4	44.1	1.0
	O2	A:PO4702	3.4	38.7	1.0
	OE1	A:GLN611	3.5	36.8	1.0
	CE1	A:HIS607	3.6	46.5	1.0
	ND1	A:HIS607	3.8	36.7	1.0
	HE22	A:GLN611	4.0	29.7	1.0
	CD	A:GLN611	4.4	29.2	1.0
	NE2	A:GLN611	4.5	24.7	1.0
	O3	A:PO4702	4.8	36.7	1.0
	NE2	A:HIS607	4.9	36.8	1.0
	HE22	A:GLN608	5.0	39.2	1.0

Reference:

S.Nawarathnage, R.D.Bunn, C.Stewart, T.Doukov, J.D.Moody. The Ubiquitin-Associated Domain of Human Thirty-Eight Negative Kinase-1 To Be Published.

Page generated: Thu Oct 3 09:05:06 2024

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