Magnesium in PDB 7tjf: S. Cerevisiae Orc Bound to 84 Bp ARS1 Dna

The binding sites of Magnesium atom in the S. Cerevisiae Orc Bound to 84 Bp ARS1 Dna (pdb code 7tjf). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 3 binding sites of Magnesium where determined in the S. Cerevisiae Orc Bound to 84 Bp ARS1 Dna, PDB code: 7tjf:
Jump to Magnesium binding site number: 1; 2; 3;

Magnesium binding site 1 out of 3 in the S. Cerevisiae Orc Bound to 84 Bp ARS1 Dna


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of S. Cerevisiae Orc Bound to 84 Bp ARS1 Dna within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg1002 b:66.3 occ:1.00 O A:HOH1112 2.1 68.7 1.0 O A:HOH1118 2.1 67.9 1.0 O2B A:ATP1001 2.1 67.7 1.0 OG1 A:THR486 2.2 67.0 1.0 O3G A:ATP1001 2.2 67.7 1.0 O A:HOH1121 2.7 70.4 1.0 CB A:THR486 3.3 67.0 1.0 PB A:ATP1001 3.3 67.7 1.0 PG A:ATP1001 3.3 67.7 1.0 O3B A:ATP1001 3.3 67.7 1.0 NH2 D:ARG267 3.6 63.1 1.0 O1A A:ATP1001 3.8 67.7 1.0 OD2 A:ASP566 3.8 69.0 1.0 O3A A:ATP1001 4.0 67.7 1.0 O1G A:ATP1001 4.1 67.7 1.0 CG2 A:THR486 4.1 67.0 1.0 OD1 A:ASP566 4.1 69.0 1.0 N A:THR486 4.3 67.0 1.0 OE2 A:GLU567 4.3 69.9 1.0 CG A:ASP566 4.3 69.0 1.0 O A:HOH1108 4.3 69.4 1.0 PA A:ATP1001 4.3 67.7 1.0 CA A:THR486 4.4 67.0 1.0 O2G A:ATP1001 4.5 67.7 1.0 NH2 A:ARG704 4.5 69.1 1.0 O1B A:ATP1001 4.5 67.7 1.0 O2A A:ATP1001 4.6 67.7 1.0 CZ D:ARG267 4.8 63.1 1.0

Magnesium binding site 2 out of 3 in the S. Cerevisiae Orc Bound to 84 Bp ARS1 Dna


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of S. Cerevisiae Orc Bound to 84 Bp ARS1 Dna within 5.0Å range: probe atom residue distance (Å) B Occ D:Mg1002 b:51.4 occ:1.00 O D:HOH1105 2.1 52.3 1.0 OG1 D:THR109 2.1 52.0 1.0 O3G D:ATP1001 2.1 51.9 1.0 O D:HOH1158 2.1 50.9 1.0 O E:HOH1124 2.1 56.2 1.0 O2B D:ATP1001 2.4 51.9 1.0 CB D:THR109 3.2 52.0 1.0 O3B D:ATP1001 3.2 51.9 1.0 PG D:ATP1001 3.3 51.9 1.0 PB D:ATP1001 3.4 51.9 1.0 O D:HOH1113 3.8 56.7 1.0 O2A D:ATP1001 3.8 51.9 1.0 O2G D:ATP1001 4.0 51.9 1.0 NZ E:LYS151 4.0 51.7 1.0 CG2 D:THR109 4.1 52.0 1.0 N D:THR109 4.2 52.0 1.0 OE1 E:GLU154 4.2 57.5 1.0 O D:HOH1193 4.2 55.2 1.0 OE2 E:GLU154 4.3 57.5 1.0 CA D:THR109 4.3 52.0 1.0 O3A D:ATP1001 4.3 51.9 1.0 O1G D:ATP1001 4.4 51.9 1.0 CE E:LYS151 4.5 51.7 1.0 O1B D:ATP1001 4.6 51.9 1.0 OD1 D:ASP217 4.6 56.2 1.0 PA D:ATP1001 4.6 51.9 1.0 CD E:GLU154 4.7 57.5 1.0 CG D:ASP217 4.7 56.2 1.0 OD2 D:ASP217 4.7 56.2 1.0

Magnesium binding site 3 out of 3 in the S. Cerevisiae Orc Bound to 84 Bp ARS1 Dna


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of S. Cerevisiae Orc Bound to 84 Bp ARS1 Dna within 5.0Å range: probe atom residue distance (Å) B Occ E:Mg1002 b:56.3 occ:1.00 O E:HOH1108 2.1 60.2 1.0 O E:HOH1118 2.1 53.5 1.0 OG1 E:THR44 2.1 52.0 1.0 O3G E:ATP1001 2.2 56.4 1.0 O2B E:ATP1001 2.4 56.4 1.0 O E:HOH1150 2.8 57.9 1.0 CB E:THR44 3.2 52.0 1.0 O3B E:ATP1001 3.3 56.4 1.0 PG E:ATP1001 3.4 56.4 1.0 PB E:ATP1001 3.5 56.4 1.0 O E:HOH1135 3.8 60.2 1.0 O1A E:ATP1001 3.8 56.4 1.0 CG2 E:THR44 4.0 52.0 1.0 O3A E:ATP1001 4.2 56.4 1.0 O E:HOH1140 4.2 57.9 1.0 OD1 E:ASP133 4.3 53.8 1.0 O2G E:ATP1001 4.3 56.4 1.0 PA E:ATP1001 4.4 56.4 1.0 N E:THR44 4.4 52.0 1.0 CA E:THR44 4.4 52.0 1.0 O1G E:ATP1001 4.4 56.4 1.0 OD2 E:ASP133 4.4 53.8 1.0 O2A E:ATP1001 4.6 56.4 1.0 O1B E:ATP1001 4.7 56.4 1.0 CG E:ASP133 4.7 53.8 1.0

J.M.Schmidt, R.Yang, A.Kumar, O.Hunker, J.Seebacher, F.Bleichert. Sub-3 Angstrom Cryo-Em Structures Reveal A Mechanism of Origin Licensing Control Through Autoinhibition of Orc-Dna-CDC6 To Be Published.