Magnesium in PDB 7tjw: Yeast Atp Synthase F1 Region State 1CATALYTIC(E-H) with 10 Mm Atp

All present enzymatic activity of Yeast Atp Synthase F1 Region State 1CATALYTIC(E-H) with 10 Mm Atp:
7.1.2.2;

The binding sites of Magnesium atom in the Yeast Atp Synthase F1 Region State 1CATALYTIC(E-H) with 10 Mm Atp (pdb code 7tjw). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 5 binding sites of Magnesium where determined in the Yeast Atp Synthase F1 Region State 1CATALYTIC(E-H) with 10 Mm Atp, PDB code: 7tjw:
Jump to Magnesium binding site number: 1; 2; 3; 4; 5;

Magnesium binding site 1 out of 5 in the Yeast Atp Synthase F1 Region State 1CATALYTIC(E-H) with 10 Mm Atp


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Yeast Atp Synthase F1 Region State 1CATALYTIC(E-H) with 10 Mm Atp within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg601 b:60.9 occ:1.00 O2B A:ATP600 2.0 61.9 1.0 O3G A:ATP600 2.0 61.9 1.0 OG1 A:THR178 2.1 59.9 1.0 O3B A:ATP600 2.4 61.9 1.0 PB A:ATP600 2.7 61.9 1.0 PG A:ATP600 2.8 61.9 1.0 CB A:THR178 3.1 59.9 1.0 O2A A:ATP600 3.1 61.9 1.0 O3A A:ATP600 3.4 61.9 1.0 PA A:ATP600 3.8 61.9 1.0 O1G A:ATP600 3.8 61.9 1.0 O2G A:ATP600 3.9 61.9 1.0 N A:THR178 3.9 59.9 1.0 O1B A:ATP600 3.9 61.9 1.0 CA A:THR178 4.1 59.9 1.0 CG2 A:THR178 4.2 59.9 1.0 O1A A:ATP600 4.3 61.9 1.0 NE2 A:GLN210 4.7 58.2 1.0

Magnesium binding site 2 out of 5 in the Yeast Atp Synthase F1 Region State 1CATALYTIC(E-H) with 10 Mm Atp


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Yeast Atp Synthase F1 Region State 1CATALYTIC(E-H) with 10 Mm Atp within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg601 b:56.0 occ:1.00 O3G B:ATP600 2.0 60.7 1.0 OG1 B:THR178 2.0 60.3 1.0 OD2 B:ASP271 2.2 61.9 1.0 O2B B:ATP600 2.3 60.7 1.0 CG B:ASP271 3.2 61.9 1.0 PG B:ATP600 3.3 60.7 1.0 CB B:THR178 3.4 60.3 1.0 O3B B:ATP600 3.5 60.7 1.0 PB B:ATP600 3.5 60.7 1.0 OD1 B:ASP271 3.6 61.9 1.0 N B:THR178 3.9 60.3 1.0 O1G B:ATP600 3.9 60.7 1.0 CA B:THR178 4.1 60.3 1.0 O1A B:ATP600 4.3 60.7 1.0 CG2 B:THR178 4.4 60.3 1.0 O2G B:ATP600 4.4 60.7 1.0 O1B B:ATP600 4.5 60.7 1.0 CB B:ASP271 4.5 61.9 1.0 O3A B:ATP600 4.5 60.7 1.0 NZ B:LYS177 4.7 64.2 1.0 CB B:LYS177 4.8 64.2 1.0 CE B:LYS177 4.9 64.2 1.0 C B:LYS177 4.9 64.2 1.0 PA B:ATP600 4.9 60.7 1.0

Magnesium binding site 3 out of 5 in the Yeast Atp Synthase F1 Region State 1CATALYTIC(E-H) with 10 Mm Atp


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of Yeast Atp Synthase F1 Region State 1CATALYTIC(E-H) with 10 Mm Atp within 5.0Å range: probe atom residue distance (Å) B Occ C:Mg601 b:57.9 occ:1.00 O3G C:ATP600 1.9 59.1 1.0 O1B C:ATP600 1.9 59.1 1.0 OG1 C:THR178 2.1 59.8 1.0 PB C:ATP600 2.8 59.1 1.0 O3B C:ATP600 2.9 59.1 1.0 PG C:ATP600 2.9 59.1 1.0 CB C:THR178 3.1 59.8 1.0 O2A C:ATP600 3.4 59.1 1.0 O3A C:ATP600 3.6 59.1 1.0 O1G C:ATP600 3.8 59.1 1.0 PA C:ATP600 3.9 59.1 1.0 OD2 C:ASP271 4.0 62.0 1.0 N C:THR178 4.0 59.8 1.0 O2G C:ATP600 4.0 59.1 1.0 CA C:THR178 4.1 59.8 1.0 CG2 C:THR178 4.2 59.8 1.0 O2B C:ATP600 4.2 59.1 1.0 OD1 C:ASP271 4.3 62.0 1.0 O1A C:ATP600 4.3 59.1 1.0 CG C:ASP271 4.6 62.0 1.0

Magnesium binding site 4 out of 5 in the Yeast Atp Synthase F1 Region State 1CATALYTIC(E-H) with 10 Mm Atp


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 4 of Yeast Atp Synthase F1 Region State 1CATALYTIC(E-H) with 10 Mm Atp within 5.0Å range: probe atom residue distance (Å) B Occ D:Mg601 b:70.9 occ:1.00 OG1 D:THR164 2.1 65.4 1.0 OD2 D:ASP256 2.1 65.1 1.0 O2G D:ATP600 2.1 67.8 1.0 O2B D:ATP600 2.2 67.8 1.0 CG D:ASP256 3.1 65.1 1.0 PG D:ATP600 3.2 67.8 1.0 OE2 D:GLU193 3.3 59.2 1.0 O3B D:ATP600 3.3 67.8 1.0 PB D:ATP600 3.4 67.8 1.0 OD1 D:ASP256 3.4 65.1 1.0 CB D:THR164 3.5 65.4 1.0 O3G D:ATP600 3.7 67.8 1.0 N D:THR164 3.9 65.4 1.0 CA D:THR164 4.0 65.4 1.0 CD D:GLU193 4.3 59.2 1.0 O3A D:ATP600 4.3 67.8 1.0 O1B D:ATP600 4.4 67.8 1.0 CG2 D:THR164 4.5 65.4 1.0 CB D:ASP256 4.5 65.1 1.0 O1G D:ATP600 4.5 67.8 1.0 OE1 D:GLU193 4.6 59.2 1.0 NH2 D:ARG260 4.6 61.8 1.0 CB D:LYS163 4.7 65.2 1.0 O1A D:ATP600 4.7 67.8 1.0 C D:LYS163 4.8 65.2 1.0 ND2 D:ASN257 4.8 62.9 1.0 NH1 C:ARG375 4.9 63.0 1.0 NH1 D:ARG190 4.9 60.7 1.0 PA D:ATP600 4.9 67.8 1.0 O2A D:ATP600 5.0 67.8 1.0 CE D:LYS163 5.0 65.2 1.0

Magnesium binding site 5 out of 5 in the Yeast Atp Synthase F1 Region State 1CATALYTIC(E-H) with 10 Mm Atp


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 5 of Yeast Atp Synthase F1 Region State 1CATALYTIC(E-H) with 10 Mm Atp within 5.0Å range: probe atom residue distance (Å) B Occ F:Mg601 b:52.1 occ:1.00 O3G F:ATP600 2.1 57.9 1.0 OG1 F:THR164 2.1 58.2 1.0 O2B F:ATP600 2.2 57.9 1.0 PG F:ATP600 3.4 57.9 1.0 CB F:THR164 3.4 58.2 1.0 PB F:ATP600 3.4 57.9 1.0 O3B F:ATP600 3.4 57.9 1.0 N F:THR164 3.8 58.2 1.0 CA F:THR164 4.1 58.2 1.0 O2G F:ATP600 4.3 57.9 1.0 O1G F:ATP600 4.3 57.9 1.0 O3A F:ATP600 4.3 57.9 1.0 NH1 F:ARG190 4.4 56.3 1.0 CB F:LYS163 4.4 58.4 1.0 O1B F:ATP600 4.4 57.9 1.0 O1A F:ATP600 4.5 57.9 1.0 CG2 F:THR164 4.5 58.2 1.0 C F:LYS163 4.7 58.4 1.0 PA F:ATP600 4.8 57.9 1.0 O2A F:ATP600 5.0 57.9 1.0 CA F:LYS163 5.0 58.4 1.0

H.Guo, J.L.Rubinstein. Structure of Atp Synthase Under Strain During Catalysis. Nat Commun V. 13 2232 2022.
ISSN: ESSN 2041-1723
PubMed: 35468906
DOI: 10.1038/S41467-022-29893-2