Magnesium in PDB 7tjx: Yeast Atp Synthase F1 Region State 1BINDING(A-D) with 10 Mm Atp

All present enzymatic activity of Yeast Atp Synthase F1 Region State 1BINDING(A-D) with 10 Mm Atp:
7.1.2.2;

The binding sites of Magnesium atom in the Yeast Atp Synthase F1 Region State 1BINDING(A-D) with 10 Mm Atp (pdb code 7tjx). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 5 binding sites of Magnesium where determined in the Yeast Atp Synthase F1 Region State 1BINDING(A-D) with 10 Mm Atp, PDB code: 7tjx:
Jump to Magnesium binding site number: 1; 2; 3; 4; 5;

Magnesium binding site 1 out of 5 in the Yeast Atp Synthase F1 Region State 1BINDING(A-D) with 10 Mm Atp


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Yeast Atp Synthase F1 Region State 1BINDING(A-D) with 10 Mm Atp within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg601 b:77.6 occ:1.00 O2B A:ATP600 2.0 79.0 1.0 O3G A:ATP600 2.1 79.0 1.0 OG1 A:THR178 2.1 75.2 1.0 O3B A:ATP600 2.6 79.0 1.0 PB A:ATP600 2.8 79.0 1.0 PG A:ATP600 2.9 79.0 1.0 CB A:THR178 3.2 75.2 1.0 O1A A:ATP600 3.3 79.0 1.0 O3A A:ATP600 3.5 79.0 1.0 O1G A:ATP600 3.8 79.0 1.0 PA A:ATP600 3.9 79.0 1.0 N A:THR178 3.9 75.2 1.0 O2G A:ATP600 4.0 79.0 1.0 O1B A:ATP600 4.1 79.0 1.0 CA A:THR178 4.2 75.2 1.0 CG2 A:THR178 4.3 75.2 1.0 O2A A:ATP600 4.4 79.0 1.0 NZ A:LYS177 5.0 77.5 1.0

Magnesium binding site 2 out of 5 in the Yeast Atp Synthase F1 Region State 1BINDING(A-D) with 10 Mm Atp


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Yeast Atp Synthase F1 Region State 1BINDING(A-D) with 10 Mm Atp within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg601 b:73.6 occ:1.00 O1G B:ATP600 1.9 78.3 1.0 O2B B:ATP600 2.0 78.3 1.0 OG1 B:THR178 2.1 74.0 1.0 PG B:ATP600 2.7 78.3 1.0 O3B B:ATP600 2.7 78.3 1.0 PB B:ATP600 2.9 78.3 1.0 CB B:THR178 3.2 74.0 1.0 O2G B:ATP600 3.5 78.3 1.0 N B:THR178 3.7 74.0 1.0 O1B B:ATP600 3.9 78.3 1.0 CA B:THR178 3.9 74.0 1.0 O3A B:ATP600 4.0 78.3 1.0 O3G B:ATP600 4.1 78.3 1.0 CG2 B:THR178 4.4 74.0 1.0 O1A B:ATP600 4.5 78.3 1.0 O2A B:ATP600 4.6 78.3 1.0 PA B:ATP600 4.6 78.3 1.0 NZ B:LYS177 4.7 77.9 1.0 CB B:LYS177 4.8 77.9 1.0 C B:LYS177 4.8 77.9 1.0 CE B:LYS177 4.9 77.9 1.0 OE1 B:GLN210 4.9 70.9 1.0

Magnesium binding site 3 out of 5 in the Yeast Atp Synthase F1 Region State 1BINDING(A-D) with 10 Mm Atp


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of Yeast Atp Synthase F1 Region State 1BINDING(A-D) with 10 Mm Atp within 5.0Å range: probe atom residue distance (Å) B Occ C:Mg601 b:64.0 occ:1.00 O2B C:ATP600 1.9 67.1 1.0 O1G C:ATP600 2.0 67.1 1.0 OG1 C:THR178 2.1 66.8 1.0 O3B C:ATP600 2.4 67.1 1.0 PG C:ATP600 2.4 67.1 1.0 PB C:ATP600 2.7 67.1 1.0 O2G C:ATP600 3.0 67.1 1.0 CB C:THR178 3.1 66.8 1.0 O3A C:ATP600 3.6 67.1 1.0 N C:THR178 3.8 66.8 1.0 O1B C:ATP600 3.8 67.1 1.0 O1A C:ATP600 3.8 67.1 1.0 O3G C:ATP600 3.9 67.1 1.0 CA C:THR178 4.0 66.8 1.0 OD2 C:ASP271 4.1 75.3 1.0 PA C:ATP600 4.1 67.1 1.0 CG2 C:THR178 4.2 66.8 1.0 O2A C:ATP600 4.4 67.1 1.0 NE2 C:GLN210 4.6 69.5 1.0 OD1 C:ASP271 4.8 75.3 1.0 NZ C:LYS177 4.8 67.9 1.0 CG C:ASP271 4.8 75.3 1.0 C C:LYS177 4.9 67.9 1.0 CB C:LYS177 5.0 67.9 1.0

Magnesium binding site 4 out of 5 in the Yeast Atp Synthase F1 Region State 1BINDING(A-D) with 10 Mm Atp


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 4 of Yeast Atp Synthase F1 Region State 1BINDING(A-D) with 10 Mm Atp within 5.0Å range: probe atom residue distance (Å) B Occ D:Mg601 b:74.6 occ:1.00 O2 D:PO4602 1.9 71.7 1.0 O1B D:ADP600 2.0 77.6 1.0 OG1 D:THR164 2.1 75.3 1.0 CB D:THR164 2.9 75.3 1.0 OE1 D:GLU193 2.9 71.2 1.0 P D:PO4602 3.0 71.7 1.0 PB D:ADP600 3.2 77.6 1.0 O3 D:PO4602 3.3 71.7 1.0 O3B D:ADP600 3.5 77.6 1.0 NZ D:LYS163 3.5 74.5 1.0 NH2 D:ARG190 3.6 70.8 1.0 O4 D:PO4602 3.7 71.7 1.0 O3A D:ADP600 3.7 77.6 1.0 CD D:GLU193 3.8 71.2 1.0 N D:THR164 3.9 75.3 1.0 O2A D:ADP600 3.9 77.6 1.0 CA D:THR164 4.0 75.3 1.0 CG2 D:THR164 4.0 75.3 1.0 OE2 D:GLU193 4.0 71.2 1.0 PA D:ADP600 4.1 77.6 1.0 O1A D:ADP600 4.2 77.6 1.0 O1 D:PO4602 4.2 71.7 1.0 CG D:LYS163 4.3 74.5 1.0 O2B D:ADP600 4.5 77.6 1.0 NE C:ARG375 4.5 72.9 1.0 CZ D:ARG190 4.8 70.8 1.0 CE D:LYS163 4.8 74.5 1.0 CD C:ARG375 5.0 72.9 1.0

Magnesium binding site 5 out of 5 in the Yeast Atp Synthase F1 Region State 1BINDING(A-D) with 10 Mm Atp


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 5 of Yeast Atp Synthase F1 Region State 1BINDING(A-D) with 10 Mm Atp within 5.0Å range: probe atom residue distance (Å) B Occ F:Mg601 b:72.1 occ:1.00 O1G F:ATP600 1.9 74.3 1.0 O2B F:ATP600 2.0 74.3 1.0 OG1 F:THR164 2.1 71.4 1.0 PG F:ATP600 2.8 74.3 1.0 O3B F:ATP600 2.8 74.3 1.0 PB F:ATP600 3.0 74.3 1.0 CB F:THR164 3.2 71.4 1.0 N F:THR164 3.7 71.4 1.0 O2G F:ATP600 3.7 74.3 1.0 OE2 F:GLU193 3.8 72.2 1.0 CA F:THR164 3.9 71.4 1.0 O3A F:ATP600 4.0 74.3 1.0 OE1 F:GLU193 4.0 72.2 1.0 NH1 F:ARG190 4.0 72.7 1.0 O3G F:ATP600 4.0 74.3 1.0 O1B F:ATP600 4.1 74.3 1.0 O1A F:ATP600 4.3 74.3 1.0 CD F:GLU193 4.3 72.2 1.0 CG2 F:THR164 4.3 71.4 1.0 NH1 B:ARG375 4.5 74.5 1.0 PA F:ATP600 4.6 74.3 1.0 CB F:LYS163 4.7 73.8 1.0 O2A F:ATP600 4.7 74.3 1.0 C F:LYS163 4.8 73.8 1.0

H.Guo, J.L.Rubinstein. Structure of Atp Synthase Under Strain During Catalysis. Nat Commun V. 13 2232 2022.
ISSN: ESSN 2041-1723
PubMed: 35468906
DOI: 10.1038/S41467-022-29893-2