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Magnesium in PDB 7to3: Structure of Enterobacter Cloacae CAP2-CDND02 2:2 Complex

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Structure of Enterobacter Cloacae CAP2-CDND02 2:2 Complex (pdb code 7to3). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 4 binding sites of Magnesium where determined in the Structure of Enterobacter Cloacae CAP2-CDND02 2:2 Complex, PDB code: 7to3:
Jump to Magnesium binding site number: 1; 2; 3; 4;

Magnesium binding site 1 out of 4 in 7to3

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Magnesium binding site 1 out of 4 in the Structure of Enterobacter Cloacae CAP2-CDND02 2:2 Complex


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Structure of Enterobacter Cloacae CAP2-CDND02 2:2 Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Mg402

b:71.0
occ:1.00
OD2 C:ASP69 2.1 81.0 1.0
O1A C:ATP404 2.7 85.5 1.0
OD1 C:ASP71 2.8 78.0 1.0
CG C:ASP69 3.2 81.0 1.0
OD2 C:ASP121 3.6 85.8 1.0
OD1 C:ASP69 3.6 81.0 1.0
CG C:ASP71 3.7 78.0 1.0
OD2 C:ASP71 3.9 78.0 1.0
PA C:ATP404 4.1 85.5 1.0
MG C:MG403 4.1 82.5 1.0
CG C:ASP121 4.4 85.8 1.0
CB C:ASP121 4.4 85.8 1.0
CB C:ASP69 4.5 81.0 1.0
O2A C:ATP404 4.7 85.5 1.0
O5' C:ATP404 4.8 85.5 1.0
C5' C:ATP404 4.9 85.5 1.0

Magnesium binding site 2 out of 4 in 7to3

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Magnesium binding site 2 out of 4 in the Structure of Enterobacter Cloacae CAP2-CDND02 2:2 Complex


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Structure of Enterobacter Cloacae CAP2-CDND02 2:2 Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Mg403

b:82.5
occ:1.00
O2B C:ATP404 2.1 85.5 1.0
O1G C:ATP404 2.6 85.5 1.0
OD2 C:ASP71 2.6 78.0 1.0
O3B C:ATP404 3.2 85.5 1.0
PB C:ATP404 3.2 85.5 1.0
O1A C:ATP404 3.3 85.5 1.0
PG C:ATP404 3.4 85.5 1.0
OD2 C:ASP69 3.5 81.0 1.0
OG C:SER53 3.6 77.4 1.0
CG C:ASP71 3.7 78.0 1.0
O C:ASP69 3.9 81.0 1.0
O3A C:ATP404 4.0 85.5 1.0
OD1 C:ASP71 4.1 78.0 1.0
MG C:MG402 4.1 71.0 1.0
CG C:ASP69 4.1 81.0 1.0
PA C:ATP404 4.2 85.5 1.0
CB C:ASP69 4.3 81.0 1.0
N C:SER53 4.4 77.4 1.0
O1B C:ATP404 4.4 85.5 1.0
O2G C:ATP404 4.4 85.5 1.0
CB C:SER53 4.5 77.4 1.0
O3G C:ATP404 4.6 85.5 1.0
C C:ASP69 4.6 81.0 1.0
CB C:ASP71 4.9 78.0 1.0

Magnesium binding site 3 out of 4 in 7to3

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Magnesium binding site 3 out of 4 in the Structure of Enterobacter Cloacae CAP2-CDND02 2:2 Complex


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of Structure of Enterobacter Cloacae CAP2-CDND02 2:2 Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Mg402

b:70.0
occ:1.00
OD2 D:ASP69 2.1 80.2 1.0
O1A D:ATP404 2.7 84.7 1.0
OD1 D:ASP71 2.8 77.3 1.0
CG D:ASP69 3.2 80.2 1.0
OD2 D:ASP121 3.6 85.2 1.0
OD1 D:ASP69 3.6 80.2 1.0
CG D:ASP71 3.7 77.3 1.0
OD2 D:ASP71 3.9 77.3 1.0
PA D:ATP404 4.1 84.7 1.0
MG D:MG403 4.1 81.7 1.0
CG D:ASP121 4.4 85.2 1.0
CB D:ASP121 4.4 85.2 1.0
CB D:ASP69 4.5 80.2 1.0
O2A D:ATP404 4.7 84.7 1.0
O5' D:ATP404 4.8 84.7 1.0
C5' D:ATP404 4.9 84.7 1.0

Magnesium binding site 4 out of 4 in 7to3

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Magnesium binding site 4 out of 4 in the Structure of Enterobacter Cloacae CAP2-CDND02 2:2 Complex


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 4 of Structure of Enterobacter Cloacae CAP2-CDND02 2:2 Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Mg403

b:81.7
occ:1.00
O2B D:ATP404 2.1 84.7 1.0
O1G D:ATP404 2.6 84.7 1.0
OD2 D:ASP71 2.6 77.3 1.0
O3B D:ATP404 3.2 84.7 1.0
PB D:ATP404 3.2 84.7 1.0
O1A D:ATP404 3.3 84.7 1.0
PG D:ATP404 3.4 84.7 1.0
OD2 D:ASP69 3.5 80.2 1.0
OG D:SER53 3.6 77.4 1.0
CG D:ASP71 3.7 77.3 1.0
O D:ASP69 3.9 80.2 1.0
O3A D:ATP404 4.0 84.7 1.0
OD1 D:ASP71 4.1 77.3 1.0
MG D:MG402 4.1 70.0 1.0
CG D:ASP69 4.1 80.2 1.0
PA D:ATP404 4.2 84.7 1.0
CB D:ASP69 4.3 80.2 1.0
N D:SER53 4.4 77.4 1.0
O1B D:ATP404 4.4 84.7 1.0
O2G D:ATP404 4.4 84.7 1.0
CB D:SER53 4.5 77.4 1.0
O3G D:ATP404 4.6 84.7 1.0
C D:ASP69 4.6 80.2 1.0
CB D:ASP71 4.9 77.3 1.0

Reference:

H.E.Ledvina, Q.Ye, Y.Gu, Y.Quan, R.K.Lau, H.Zhou, K.D.Corbett, A.T.Whiteley. A Standalone E1-E2 Fusion Protein Catalyzes Ubiquitin-Like Transfer in Bacterial Antiviral Immunity To Be Published.
Page generated: Thu Oct 3 09:23:35 2024

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