Magnesium in PDB 7to3: Structure of Enterobacter Cloacae CAP2-CDND02 2:2 Complex
Magnesium Binding Sites:
The binding sites of Magnesium atom in the Structure of Enterobacter Cloacae CAP2-CDND02 2:2 Complex
(pdb code 7to3). This binding sites where shown within
5.0 Angstroms radius around Magnesium atom.
In total 4 binding sites of Magnesium where determined in the
Structure of Enterobacter Cloacae CAP2-CDND02 2:2 Complex, PDB code: 7to3:
Jump to Magnesium binding site number:
1;
2;
3;
4;
Magnesium binding site 1 out
of 4 in 7to3
Go back to
Magnesium Binding Sites List in 7to3
Magnesium binding site 1 out
of 4 in the Structure of Enterobacter Cloacae CAP2-CDND02 2:2 Complex
 Mono view
 Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 1 of Structure of Enterobacter Cloacae CAP2-CDND02 2:2 Complex within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Mg402
b:71.0
occ:1.00
|
OD2
|
C:ASP69
|
2.1
|
81.0
|
1.0
|
O1A
|
C:ATP404
|
2.7
|
85.5
|
1.0
|
OD1
|
C:ASP71
|
2.8
|
78.0
|
1.0
|
CG
|
C:ASP69
|
3.2
|
81.0
|
1.0
|
OD2
|
C:ASP121
|
3.6
|
85.8
|
1.0
|
OD1
|
C:ASP69
|
3.6
|
81.0
|
1.0
|
CG
|
C:ASP71
|
3.7
|
78.0
|
1.0
|
OD2
|
C:ASP71
|
3.9
|
78.0
|
1.0
|
PA
|
C:ATP404
|
4.1
|
85.5
|
1.0
|
MG
|
C:MG403
|
4.1
|
82.5
|
1.0
|
CG
|
C:ASP121
|
4.4
|
85.8
|
1.0
|
CB
|
C:ASP121
|
4.4
|
85.8
|
1.0
|
CB
|
C:ASP69
|
4.5
|
81.0
|
1.0
|
O2A
|
C:ATP404
|
4.7
|
85.5
|
1.0
|
O5'
|
C:ATP404
|
4.8
|
85.5
|
1.0
|
C5'
|
C:ATP404
|
4.9
|
85.5
|
1.0
|
|
Magnesium binding site 2 out
of 4 in 7to3
Go back to
Magnesium Binding Sites List in 7to3
Magnesium binding site 2 out
of 4 in the Structure of Enterobacter Cloacae CAP2-CDND02 2:2 Complex
 Mono view
 Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 2 of Structure of Enterobacter Cloacae CAP2-CDND02 2:2 Complex within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Mg403
b:82.5
occ:1.00
|
O2B
|
C:ATP404
|
2.1
|
85.5
|
1.0
|
O1G
|
C:ATP404
|
2.6
|
85.5
|
1.0
|
OD2
|
C:ASP71
|
2.6
|
78.0
|
1.0
|
O3B
|
C:ATP404
|
3.2
|
85.5
|
1.0
|
PB
|
C:ATP404
|
3.2
|
85.5
|
1.0
|
O1A
|
C:ATP404
|
3.3
|
85.5
|
1.0
|
PG
|
C:ATP404
|
3.4
|
85.5
|
1.0
|
OD2
|
C:ASP69
|
3.5
|
81.0
|
1.0
|
OG
|
C:SER53
|
3.6
|
77.4
|
1.0
|
CG
|
C:ASP71
|
3.7
|
78.0
|
1.0
|
O
|
C:ASP69
|
3.9
|
81.0
|
1.0
|
O3A
|
C:ATP404
|
4.0
|
85.5
|
1.0
|
OD1
|
C:ASP71
|
4.1
|
78.0
|
1.0
|
MG
|
C:MG402
|
4.1
|
71.0
|
1.0
|
CG
|
C:ASP69
|
4.1
|
81.0
|
1.0
|
PA
|
C:ATP404
|
4.2
|
85.5
|
1.0
|
CB
|
C:ASP69
|
4.3
|
81.0
|
1.0
|
N
|
C:SER53
|
4.4
|
77.4
|
1.0
|
O1B
|
C:ATP404
|
4.4
|
85.5
|
1.0
|
O2G
|
C:ATP404
|
4.4
|
85.5
|
1.0
|
CB
|
C:SER53
|
4.5
|
77.4
|
1.0
|
O3G
|
C:ATP404
|
4.6
|
85.5
|
1.0
|
C
|
C:ASP69
|
4.6
|
81.0
|
1.0
|
CB
|
C:ASP71
|
4.9
|
78.0
|
1.0
|
|
Magnesium binding site 3 out
of 4 in 7to3
Go back to
Magnesium Binding Sites List in 7to3
Magnesium binding site 3 out
of 4 in the Structure of Enterobacter Cloacae CAP2-CDND02 2:2 Complex
 Mono view
 Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 3 of Structure of Enterobacter Cloacae CAP2-CDND02 2:2 Complex within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
D:Mg402
b:70.0
occ:1.00
|
OD2
|
D:ASP69
|
2.1
|
80.2
|
1.0
|
O1A
|
D:ATP404
|
2.7
|
84.7
|
1.0
|
OD1
|
D:ASP71
|
2.8
|
77.3
|
1.0
|
CG
|
D:ASP69
|
3.2
|
80.2
|
1.0
|
OD2
|
D:ASP121
|
3.6
|
85.2
|
1.0
|
OD1
|
D:ASP69
|
3.6
|
80.2
|
1.0
|
CG
|
D:ASP71
|
3.7
|
77.3
|
1.0
|
OD2
|
D:ASP71
|
3.9
|
77.3
|
1.0
|
PA
|
D:ATP404
|
4.1
|
84.7
|
1.0
|
MG
|
D:MG403
|
4.1
|
81.7
|
1.0
|
CG
|
D:ASP121
|
4.4
|
85.2
|
1.0
|
CB
|
D:ASP121
|
4.4
|
85.2
|
1.0
|
CB
|
D:ASP69
|
4.5
|
80.2
|
1.0
|
O2A
|
D:ATP404
|
4.7
|
84.7
|
1.0
|
O5'
|
D:ATP404
|
4.8
|
84.7
|
1.0
|
C5'
|
D:ATP404
|
4.9
|
84.7
|
1.0
|
|
Magnesium binding site 4 out
of 4 in 7to3
Go back to
Magnesium Binding Sites List in 7to3
Magnesium binding site 4 out
of 4 in the Structure of Enterobacter Cloacae CAP2-CDND02 2:2 Complex
 Mono view
 Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 4 of Structure of Enterobacter Cloacae CAP2-CDND02 2:2 Complex within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
D:Mg403
b:81.7
occ:1.00
|
O2B
|
D:ATP404
|
2.1
|
84.7
|
1.0
|
O1G
|
D:ATP404
|
2.6
|
84.7
|
1.0
|
OD2
|
D:ASP71
|
2.6
|
77.3
|
1.0
|
O3B
|
D:ATP404
|
3.2
|
84.7
|
1.0
|
PB
|
D:ATP404
|
3.2
|
84.7
|
1.0
|
O1A
|
D:ATP404
|
3.3
|
84.7
|
1.0
|
PG
|
D:ATP404
|
3.4
|
84.7
|
1.0
|
OD2
|
D:ASP69
|
3.5
|
80.2
|
1.0
|
OG
|
D:SER53
|
3.6
|
77.4
|
1.0
|
CG
|
D:ASP71
|
3.7
|
77.3
|
1.0
|
O
|
D:ASP69
|
3.9
|
80.2
|
1.0
|
O3A
|
D:ATP404
|
4.0
|
84.7
|
1.0
|
OD1
|
D:ASP71
|
4.1
|
77.3
|
1.0
|
MG
|
D:MG402
|
4.1
|
70.0
|
1.0
|
CG
|
D:ASP69
|
4.1
|
80.2
|
1.0
|
PA
|
D:ATP404
|
4.2
|
84.7
|
1.0
|
CB
|
D:ASP69
|
4.3
|
80.2
|
1.0
|
N
|
D:SER53
|
4.4
|
77.4
|
1.0
|
O1B
|
D:ATP404
|
4.4
|
84.7
|
1.0
|
O2G
|
D:ATP404
|
4.4
|
84.7
|
1.0
|
CB
|
D:SER53
|
4.5
|
77.4
|
1.0
|
O3G
|
D:ATP404
|
4.6
|
84.7
|
1.0
|
C
|
D:ASP69
|
4.6
|
80.2
|
1.0
|
CB
|
D:ASP71
|
4.9
|
77.3
|
1.0
|
|
Reference:
H.E.Ledvina,
Q.Ye,
Y.Gu,
Y.Quan,
R.K.Lau,
H.Zhou,
K.D.Corbett,
A.T.Whiteley.
A Standalone E1-E2 Fusion Protein Catalyzes Ubiquitin-Like Transfer in Bacterial Antiviral Immunity To Be Published.
Page generated: Thu Oct 3 09:23:35 2024
|