Magnesium in PDB 7toc: Crystal Structure of the Mitochondrial Ketol-Acid Reductoisomerase Ilvc From Candida Auris

Enzymatic activity of Crystal Structure of the Mitochondrial Ketol-Acid Reductoisomerase Ilvc From Candida Auris

All present enzymatic activity of Crystal Structure of the Mitochondrial Ketol-Acid Reductoisomerase Ilvc From Candida Auris:
1.1.1.86;

Protein crystallography data

The structure of Crystal Structure of the Mitochondrial Ketol-Acid Reductoisomerase Ilvc From Candida Auris, PDB code: 7toc was solved by Y.Kim, E.Evdokimova, R.Di, P.Stogios, S.Savchenko, A.Joachimiak, Center Forstructural Genomics Of Infectious Diseases (Csgid), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 41.12 / 2.43
Space group P 61 2 2
Cell size a, b, c (Å), α, β, γ (°) 145.555, 145.555, 244.349, 90, 90, 120
R / Rfree (%) 18 / 20.9

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Crystal Structure of the Mitochondrial Ketol-Acid Reductoisomerase Ilvc From Candida Auris (pdb code 7toc). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 4 binding sites of Magnesium where determined in the Crystal Structure of the Mitochondrial Ketol-Acid Reductoisomerase Ilvc From Candida Auris, PDB code: 7toc:
Jump to Magnesium binding site number: 1; 2; 3; 4;

Magnesium binding site 1 out of 4 in 7toc

Go back to Magnesium Binding Sites List in 7toc
Magnesium binding site 1 out of 4 in the Crystal Structure of the Mitochondrial Ketol-Acid Reductoisomerase Ilvc From Candida Auris


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of the Mitochondrial Ketol-Acid Reductoisomerase Ilvc From Candida Auris within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg505

b:81.3
occ:1.00
 O9 A:MLI502 2.2 72.6 1.0
OD1 A:ASP260 2.2 84.3 1.0
O A:HOH606 2.4 60.6 1.0
OE1 A:GLU264 2.4 69.9 1.0
OE2 A:GLU264 2.9 80.7 1.0
CD A:GLU264 3.0 78.5 1.0
C3 A:MLI502 3.4 79.2 1.0
CG A:ASP260 3.4 80.3 1.0
CE1 A:HIS176 3.6 70.6 1.0
O2D A:NDP501 3.8 69.1 1.0
OG B:SER322 3.9 63.8 1.0
NE2 A:HIS176 3.9 76.0 1.0
ND1 A:HIS176 4.0 71.3 1.0
C2 A:MLI502 4.1 81.9 1.0
OD2 A:ASP260 4.2 87.6 1.0
O8 A:MLI502 4.2 62.5 1.0
C1 A:MLI502 4.3 65.2 1.0
O7 A:MLI502 4.3 79.8 1.0
CB A:ASP260 4.4 75.7 1.0
O6 A:MLI502 4.4 99.2 1.0
CD2 A:HIS176 4.4 73.3 1.0
CG A:GLU264 4.5 73.0 1.0
CG A:HIS176 4.5 71.2 1.0
CB B:ALA325 4.6 57.8 1.0
N B:ALA325 4.6 71.6 1.0
CB B:THR324 4.7 74.7 1.0
CB B:SER322 4.8 65.2 1.0
CD2 A:LEU261 4.8 67.7 1.0
C A:ASP260 4.9 72.1 1.0
O A:ASP260 4.9 77.4 1.0
C2D A:NDP501 4.9 64.3 1.0
CA B:ALA325 4.9 69.7 1.0
CG2 B:THR324 4.9 71.3 1.0

Magnesium binding site 2 out of 4 in 7toc

Go back to Magnesium Binding Sites List in 7toc
Magnesium binding site 2 out of 4 in the Crystal Structure of the Mitochondrial Ketol-Acid Reductoisomerase Ilvc From Candida Auris


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Crystal Structure of the Mitochondrial Ketol-Acid Reductoisomerase Ilvc From Candida Auris within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mg503

b:63.1
occ:1.00
 O A:HOH622 1.9 54.8 1.0
OD1 B:ASP260 2.1 69.9 1.0
O B:HOH610 2.1 69.8 1.0
O6 A:MLI504 2.2 67.2 1.0
O8 A:MLI504 2.2 67.5 1.0
OE1 B:GLU264 2.3 70.8 1.0
CG B:ASP260 3.1 69.2 1.0
CD B:GLU264 3.1 69.7 1.0
C2 A:MLI504 3.2 65.0 1.0
C3 A:MLI504 3.3 70.4 1.0
OE2 B:GLU264 3.3 71.1 1.0
OD2 B:ASP260 3.5 66.9 1.0
C1 A:MLI504 3.6 64.4 1.0
NE2 B:HIS176 4.0 62.6 1.0
O2D B:NDP501 4.1 56.1 1.0
MG B:MG504 4.2 92.2 1.0
OG A:SER322 4.2 64.4 1.0
CE1 B:HIS176 4.2 64.1 1.0
O7 A:MLI504 4.3 59.9 1.0
CD2 B:HIS176 4.3 64.1 1.0
O9 A:MLI504 4.4 65.2 1.0
CB B:ASP260 4.4 69.3 1.0
O B:HOH605 4.5 55.7 1.0
CG B:GLU264 4.5 70.9 1.0
CB A:ALA325 4.6 62.9 1.0
ND1 B:HIS176 4.7 60.5 1.0
O A:HOH620 4.7 61.7 1.0
C4N B:NDP501 4.7 56.6 1.0
CG B:HIS176 4.7 64.5 1.0
O B:ASP260 4.9 70.9 1.0
N1N B:NDP501 4.9 60.5 1.0
C B:ASP260 4.9 70.5 1.0
C2N B:NDP501 4.9 58.6 1.0
C5N B:NDP501 5.0 50.6 1.0
C6N B:NDP501 5.0 55.5 1.0

Magnesium binding site 3 out of 4 in 7toc

Go back to Magnesium Binding Sites List in 7toc
Magnesium binding site 3 out of 4 in the Crystal Structure of the Mitochondrial Ketol-Acid Reductoisomerase Ilvc From Candida Auris


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of Crystal Structure of the Mitochondrial Ketol-Acid Reductoisomerase Ilvc From Candida Auris within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mg504

b:92.2
occ:1.00
 O A:HOH601 1.9 81.0 1.0
OD2 B:ASP260 2.0 66.9 1.0
O B:HOH602 2.2 72.8 1.0
O9 A:MLI504 2.3 65.2 1.0
O8 A:MLI504 2.4 67.5 1.0
C3 A:MLI504 2.7 70.4 1.0
O A:HOH620 3.0 61.7 1.0
CG B:ASP260 3.1 69.2 1.0
NZ B:LYS202 3.4 71.1 1.0
OE1 A:GLU300 3.5 61.4 1.0
OD1 B:ASP260 3.7 69.9 1.0
OE2 A:GLU296 3.8 86.5 1.0
O B:HOH605 4.0 55.7 1.0
O B:PRO201 4.1 52.1 1.0
MG B:MG503 4.2 63.1 1.0
O A:HOH622 4.2 54.8 1.0
C1 A:MLI504 4.2 64.4 1.0
CD B:LYS202 4.2 61.5 1.0
OE1 A:GLU296 4.2 79.1 1.0
CB B:ASP260 4.3 69.3 1.0
OE2 A:GLU300 4.3 57.6 1.0
CD A:GLU300 4.4 62.0 1.0
CE B:LYS202 4.4 64.8 1.0
CA B:LYS202 4.4 54.7 1.0
C5N B:NDP501 4.4 50.6 1.0
C4N B:NDP501 4.4 56.6 1.0
CD A:GLU296 4.4 79.0 1.0
OE1 B:GLU264 4.5 70.8 1.0
CA B:ASP260 4.7 70.4 1.0
OE2 B:GLU256 4.8 65.7 1.0
N B:GLY203 4.9 51.1 1.0
C B:PRO201 4.9 51.9 1.0
C2 A:MLI504 5.0 65.0 1.0
C B:LYS202 5.0 55.5 1.0

Magnesium binding site 4 out of 4 in 7toc

Go back to Magnesium Binding Sites List in 7toc
Magnesium binding site 4 out of 4 in the Crystal Structure of the Mitochondrial Ketol-Acid Reductoisomerase Ilvc From Candida Auris


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 4 of Crystal Structure of the Mitochondrial Ketol-Acid Reductoisomerase Ilvc From Candida Auris within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mg505

b:106.1
occ:1.00
 OE2 B:GLU296 2.2 86.6 1.0
O6 A:MLI502 2.3 99.2 1.0
OD2 A:ASP260 2.4 87.6 1.0
O7 A:MLI502 2.6 79.8 1.0
C2 A:MLI502 2.7 81.9 1.0
OE1 B:GLU300 2.9 75.7 1.0
CD B:GLU296 3.2 85.3 1.0
CG A:ASP260 3.2 80.3 1.0
NZ A:LYS202 3.5 75.7 1.0
OE1 B:GLU296 3.5 90.4 1.0
CD A:LYS202 3.7 61.4 1.0
CD B:GLU300 3.7 69.8 1.0
OE2 B:GLU300 3.8 71.5 1.0
OD1 A:ASP260 3.8 84.3 1.0
CB A:ASP260 4.2 75.7 1.0
CE A:LYS202 4.2 67.8 1.0
CA A:ASP260 4.2 76.9 1.0
C1 A:MLI502 4.2 65.2 1.0
CA A:LYS202 4.3 59.6 1.0
CG B:GLU296 4.6 79.5 1.0
CD1 A:LEU268 4.6 68.6 1.0
O A:PRO201 4.6 68.1 1.0
CB A:LYS202 4.7 66.0 1.0
CG A:LYS202 4.8 70.5 1.0
C A:LYS202 4.9 60.2 1.0
O A:ASP260 4.9 77.4 1.0

Reference:

Y.Kim, E.Evdokimova, R.Di, P.Stogios, S.Savchenko, A.Joachimiak, Center For Structural Genomics Of Infectious Diseases(Csgid). Crystal Structure of the Mitochondrial Ketol-Acid Reductoisomerase Ilvc From Candida Auris To Be Published.
Page generated: Thu Apr 6 23:03:18 2023

Last articles

Zn in 8WB0
Zn in 8WAX
Zn in 8WAU
Zn in 8WAZ
Zn in 8WAY
Zn in 8WAV
Zn in 8WAW
Zn in 8WAT
Zn in 8W7M
Zn in 8WD3
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy