Magnesium in PDB 7tpt: Single-Particle Cryo-Em Structure of ARP2/3 Complex at Branched-Actin Junction.

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 16;

Binding sites:

The binding sites of Magnesium atom in the Single-Particle Cryo-Em Structure of ARP2/3 Complex at Branched-Actin Junction. (pdb code 7tpt). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 16 binding sites of Magnesium where determined in the Single-Particle Cryo-Em Structure of ARP2/3 Complex at Branched-Actin Junction., PDB code: 7tpt:
Jump to Magnesium binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Magnesium binding site 1 out of 16 in the Single-Particle Cryo-Em Structure of ARP2/3 Complex at Branched-Actin Junction.


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Single-Particle Cryo-Em Structure of ARP2/3 Complex at Branched-Actin Junction. within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg501 b:69.1 occ:1.00 O2B A:ADP502 1.9 60.9 1.0 O3B A:ADP502 2.4 60.9 1.0 PB A:ADP502 2.6 60.9 1.0 O2A A:ADP502 2.9 60.9 1.0 CA A:GLY171 3.5 66.0 1.0 O A:SER170 3.6 66.4 1.0 O3A A:ADP502 3.8 60.9 1.0 O1B A:ADP502 3.8 60.9 1.0 PA A:ADP502 3.9 60.9 1.0 OD2 A:ASP169 4.4 65.5 1.0 C A:SER170 4.4 66.4 1.0 N A:GLY171 4.4 66.0 1.0 N A:ASP172 4.6 66.2 1.0 C A:GLY171 4.6 66.0 1.0 O1A A:ADP502 4.8 60.9 1.0

Magnesium binding site 2 out of 16 in the Single-Particle Cryo-Em Structure of ARP2/3 Complex at Branched-Actin Junction.


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Single-Particle Cryo-Em Structure of ARP2/3 Complex at Branched-Actin Junction. within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg501 b:72.5 occ:1.00 O2B B:ADP502 1.9 76.0 1.0 O3B B:ADP502 2.1 76.0 1.0 PB B:ADP502 2.3 76.0 1.0 O1B B:ADP502 3.1 76.0 1.0 OD2 B:ASP12 3.1 79.2 1.0 O2A B:ADP502 3.7 76.0 1.0 O3A B:ADP502 3.8 76.0 1.0 CG B:ASP12 4.0 79.2 1.0 PA B:ADP502 4.2 76.0 1.0 O1A B:ADP502 4.4 76.0 1.0 OD1 B:ASP12 4.5 79.2 1.0 CG2 B:VAL354 4.8 76.4 1.0 CB B:ASP12 4.9 79.2 1.0 NE2 B:GLN141 5.0 71.7 1.0 CG1 B:VAL354 5.0 76.4 1.0

Magnesium binding site 3 out of 16 in the Single-Particle Cryo-Em Structure of ARP2/3 Complex at Branched-Actin Junction.


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of Single-Particle Cryo-Em Structure of ARP2/3 Complex at Branched-Actin Junction. within 5.0Å range: probe atom residue distance (Å) B Occ H:Mg402 b:80.5 occ:1.00 O3B H:ADP401 1.9 76.6 1.0 OE1 H:GLN137 2.2 79.6 1.0 O2B H:ADP401 2.6 76.6 1.0 NE2 H:GLN137 2.7 79.6 1.0 CD H:GLN137 2.8 79.6 1.0 PB H:ADP401 2.8 76.6 1.0 O1B H:ADP401 3.8 76.6 1.0 OD1 H:ASP154 4.0 74.2 1.0 OD2 H:ASP154 4.0 74.2 1.0 O3A H:ADP401 4.1 76.6 1.0 CG H:GLN137 4.2 79.6 1.0 CG H:ASP154 4.4 74.2 1.0 CA H:GLY156 4.5 75.3 1.0 OD2 H:ASP11 4.8 79.4 1.0 CB H:GLN137 4.9 79.6 1.0 OD1 H:ASP11 4.9 79.4 1.0 CA H:GLY13 4.9 81.1 1.0

Magnesium binding site 4 out of 16 in the Single-Particle Cryo-Em Structure of ARP2/3 Complex at Branched-Actin Junction.


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 4 of Single-Particle Cryo-Em Structure of ARP2/3 Complex at Branched-Actin Junction. within 5.0Å range: probe atom residue distance (Å) B Occ I:Mg500 b:95.2 occ:1.00 O1B I:ADP501 2.0 90.1 1.0 O3B I:ADP501 2.1 90.1 1.0 PB I:ADP501 2.4 90.1 1.0 O2B I:ADP501 3.0 90.1 1.0 CA I:GLY13 3.7 94.7 1.0 O2A I:ADP501 3.8 90.1 1.0 O3A I:ADP501 3.9 90.1 1.0 NZ I:LYS18 4.1 96.8 1.0 PA I:ADP501 4.3 90.1 1.0 O1A I:ADP501 4.5 90.1 1.0 N I:SER14 4.5 90.4 1.0 N I:GLY13 4.6 94.7 1.0 C I:GLY13 4.7 94.7 1.0

Magnesium binding site 5 out of 16 in the Single-Particle Cryo-Em Structure of ARP2/3 Complex at Branched-Actin Junction.


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 5 of Single-Particle Cryo-Em Structure of ARP2/3 Complex at Branched-Actin Junction. within 5.0Å range: probe atom residue distance (Å) B Occ J:Mg500 b:102.4 occ:1.00 O2B J:ADP501 2.3 129.0 1.0 O3B J:ADP501 2.7 129.0 1.0 PB J:ADP501 2.7 129.0 1.0 O1B J:ADP501 3.0 129.0 1.0 CA J:GLY13 4.0 132.4 1.0 O3A J:ADP501 4.3 129.0 1.0 N J:SER14 4.4 131.2 1.0 CA J:GLY156 4.5 137.0 1.0 O2A J:ADP501 4.7 129.0 1.0 C J:GLY13 4.8 132.4 1.0 PA J:ADP501 5.0 129.0 1.0

Magnesium binding site 6 out of 16 in the Single-Particle Cryo-Em Structure of ARP2/3 Complex at Branched-Actin Junction.


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 6 of Single-Particle Cryo-Em Structure of ARP2/3 Complex at Branched-Actin Junction. within 5.0Å range: probe atom residue distance (Å) B Occ K:Mg500 b:221.2 occ:1.00 O1B K:ADP501 2.2 226.9 1.0 O3B K:ADP501 2.3 226.9 1.0 PB K:ADP501 2.4 226.9 1.0 O2B K:ADP501 2.8 226.9 1.0 CA K:GLY13 3.5 211.8 1.0 O3A K:ADP501 4.0 226.9 1.0 N K:SER14 4.2 210.5 1.0 O2A K:ADP501 4.4 226.9 1.0 C K:GLY13 4.4 211.8 1.0 N K:GLY13 4.5 211.8 1.0 PA K:ADP501 4.7 226.9 1.0 O1A K:ADP501 4.8 226.9 1.0 CA K:GLY156 4.9 228.7 1.0

Magnesium binding site 7 out of 16 in the Single-Particle Cryo-Em Structure of ARP2/3 Complex at Branched-Actin Junction.


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 7 of Single-Particle Cryo-Em Structure of ARP2/3 Complex at Branched-Actin Junction. within 5.0Å range: probe atom residue distance (Å) B Occ L:Mg500 b:138.3 occ:1.00 O3B L:ADP501 2.0 159.2 1.0 PB L:ADP501 2.9 159.2 1.0 O2B L:ADP501 2.9 159.2 1.0 CA L:GLY13 3.2 159.5 1.0 O1B L:ADP501 3.5 159.2 1.0 N L:GLY13 4.1 159.5 1.0 O2A L:ADP501 4.1 159.2 1.0 O3A L:ADP501 4.3 159.2 1.0 C L:GLY13 4.4 159.5 1.0 N L:SER14 4.4 162.4 1.0 O1A L:ADP501 4.5 159.2 1.0 PA L:ADP501 4.6 159.2 1.0 C L:ASN12 4.9 154.5 1.0

Magnesium binding site 8 out of 16 in the Single-Particle Cryo-Em Structure of ARP2/3 Complex at Branched-Actin Junction.


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 8 of Single-Particle Cryo-Em Structure of ARP2/3 Complex at Branched-Actin Junction. within 5.0Å range: probe atom residue distance (Å) B Occ M:Mg500 b:78.1 occ:1.00 O1B M:ADP501 1.9 80.6 1.0 O3B M:ADP501 2.6 80.6 1.0 PB M:ADP501 2.6 80.6 1.0 O2B M:ADP501 3.3 80.6 1.0 O2A M:ADP501 4.1 80.6 1.0 O3A M:ADP501 4.1 80.6 1.0 CA M:GLY13 4.3 93.8 1.0 O1A M:ADP501 4.4 80.6 1.0 PA M:ADP501 4.5 80.6 1.0 N M:SER14 4.6 91.1 1.0 N M:GLY13 4.7 93.8 1.0 C M:GLY13 4.9 93.8 1.0

Magnesium binding site 9 out of 16 in the Single-Particle Cryo-Em Structure of ARP2/3 Complex at Branched-Actin Junction.


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 9 of Single-Particle Cryo-Em Structure of ARP2/3 Complex at Branched-Actin Junction. within 5.0Å range: probe atom residue distance (Å) B Occ N:Mg500 b:75.4 occ:1.00 O2B N:ADP501 2.0 74.8 1.0 O3B N:ADP501 2.2 74.8 1.0 PB N:ADP501 2.3 74.8 1.0 O1B N:ADP501 2.8 74.8 1.0 CA N:GLY13 3.2 77.9 1.0 OD2 N:ASP11 3.5 82.1 1.0 OE1 N:GLN137 3.5 76.3 1.0 O3A N:ADP501 3.9 74.8 1.0 CG N:ASP11 4.1 82.1 1.0 OD1 N:ASP11 4.1 82.1 1.0 N N:GLY13 4.1 77.9 1.0 CD N:GLN137 4.1 76.3 1.0 O1A N:ADP501 4.2 74.8 1.0 N N:SER14 4.3 76.0 1.0 C N:GLY13 4.3 77.9 1.0 NE2 N:GLN137 4.4 76.3 1.0 PA N:ADP501 4.5 74.8 1.0 NZ N:LYS18 4.6 81.2 1.0 O2A N:ADP501 4.6 74.8 1.0 C N:ASN12 4.9 79.5 1.0

Magnesium binding site 10 out of 16 in the Single-Particle Cryo-Em Structure of ARP2/3 Complex at Branched-Actin Junction.


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 10 of Single-Particle Cryo-Em Structure of ARP2/3 Complex at Branched-Actin Junction. within 5.0Å range: probe atom residue distance (Å) B Occ O:Mg500 b:78.2 occ:1.00 O3B O:ADP501 2.4 62.3 1.0 O2B O:ADP501 2.8 62.3 1.0 PB O:ADP501 2.9 62.3 1.0 NE2 O:GLN137 3.1 67.6 1.0 OE1 O:GLN137 3.2 67.6 1.0 O1B O:ADP501 3.4 62.3 1.0 CD O:GLN137 3.5 67.6 1.0 CA O:GLY13 3.6 68.4 1.0 N O:SER14 3.9 65.0 1.0 OD2 O:ASP11 4.2 70.7 1.0 C O:GLY13 4.3 68.4 1.0 O3A O:ADP501 4.5 62.3 1.0 N O:GLY13 4.7 68.4 1.0 OG O:SER14 4.8 65.0 1.0 CA O:GLY156 4.8 63.9 1.0 O O:ASN12 4.9 69.1 1.0 O2A O:ADP501 5.0 62.3 1.0

B.Ding, H.Y.Narvaez-Ortiz, Y.Singh, G.M.Hocky, S.Chowdhury, B.J.Nolen. Structure of ARP2/3 Complex at A Branched Actin Filament Junction Resolved By Single-Particle Cryo-Electron Microscopy. Proc.Natl.Acad.Sci.Usa V. 119 23119 2022.
ISSN: ESSN 1091-6490
PubMed: 35622886
DOI: 10.1073/PNAS.2202723119