Atomistry » Magnesium » PDB 7to3-7ttt » 7tqi
Atomistry »
  Magnesium »
    PDB 7to3-7ttt »
      7tqi »

Magnesium in PDB 7tqi: Selenium-Incorporated Nitrogenase Fe Protein (AV2-Se) From A. Vinelandii (11 Mm Ksecn)

Enzymatic activity of Selenium-Incorporated Nitrogenase Fe Protein (AV2-Se) From A. Vinelandii (11 Mm Ksecn)

All present enzymatic activity of Selenium-Incorporated Nitrogenase Fe Protein (AV2-Se) From A. Vinelandii (11 Mm Ksecn):
1.18.6.1;

Protein crystallography data

The structure of Selenium-Incorporated Nitrogenase Fe Protein (AV2-Se) From A. Vinelandii (11 Mm Ksecn), PDB code: 7tqi was solved by T.M.Buscagan, J.T.Kaiser, D.C.Rees, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 39.03 / 1.47
Space group P 2 21 21
Cell size a, b, c (Å), α, β, γ (°) 45.786, 74.678, 75.18, 90, 90, 90
R / Rfree (%) 17.6 / 19.8

Other elements in 7tqi:

The structure of Selenium-Incorporated Nitrogenase Fe Protein (AV2-Se) From A. Vinelandii (11 Mm Ksecn) also contains other interesting chemical elements:

Iron (Fe) 4 atoms

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Selenium-Incorporated Nitrogenase Fe Protein (AV2-Se) From A. Vinelandii (11 Mm Ksecn) (pdb code 7tqi). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Selenium-Incorporated Nitrogenase Fe Protein (AV2-Se) From A. Vinelandii (11 Mm Ksecn), PDB code: 7tqi:

Magnesium binding site 1 out of 1 in 7tqi

Go back to Magnesium Binding Sites List in 7tqi
Magnesium binding site 1 out of 1 in the Selenium-Incorporated Nitrogenase Fe Protein (AV2-Se) From A. Vinelandii (11 Mm Ksecn)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Selenium-Incorporated Nitrogenase Fe Protein (AV2-Se) From A. Vinelandii (11 Mm Ksecn) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg303

b:14.3
occ:1.00
O A:HOH462 2.1 16.2 1.0
OG A:SER16 2.1 13.6 1.0
O3B A:ADP304 2.1 13.6 1.0
O A:HOH431 2.1 16.2 1.0
O A:HOH449 2.1 16.8 1.0
O A:HOH429 2.1 15.0 1.0
CB A:SER16 3.1 12.7 1.0
PB A:ADP304 3.3 13.8 1.0
O1B A:ADP304 3.6 16.6 1.0
OD2 A:ASP39 3.7 18.8 1.0
OD1 A:ASP43 3.9 23.4 1.0
N A:SER16 3.9 12.8 1.0
CA A:SER16 4.1 13.2 1.0
OD2 A:ASP125 4.1 17.5 1.0
O1A A:ADP304 4.1 15.5 1.0
OG A:SER44 4.2 18.3 1.0
OD1 A:ASP125 4.3 16.0 1.0
O3A A:ADP304 4.3 15.2 1.0
O2B A:ADP304 4.4 13.5 1.0
CG A:ASP39 4.5 19.1 1.0
PA A:ADP304 4.6 15.0 1.0
O A:HOH470 4.6 23.3 1.0
CG A:ASP125 4.6 17.5 1.0
O2A A:ADP304 4.7 16.2 1.0
CB A:ASP39 4.9 17.6 1.0
CB A:LYS15 4.9 13.4 1.0
CE A:LYS15 4.9 14.8 1.0
C A:LYS15 5.0 12.4 1.0

Reference:

T.M.Buscagan, J.T.Kaiser, D.C.Rees. Selenocyanate Derived Se-Incorporation Into the Nitrogenase Fe Protein Cluster. Elife V. 11 2022.
ISSN: ESSN 2050-084X
PubMed: 35904245
DOI: 10.7554/ELIFE.79311
Page generated: Thu Oct 3 09:25:04 2024

Last articles

Na in 6CRH
Na in 6CS8
Na in 6CR8
Na in 6CR7
Na in 6CR4
Na in 6CR5
Na in 6CR6
Na in 6CR3
Na in 6CQJ
Na in 6CL5
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy