Atomistry » Magnesium » PDB 7tu3-7u56 » 7tu6
Atomistry »
  Magnesium »
    PDB 7tu3-7u56 »
      7tu6 »

Magnesium in PDB 7tu6: Structure of the L. Blandensis Dgtpase Bound to Datp

Enzymatic activity of Structure of the L. Blandensis Dgtpase Bound to Datp

All present enzymatic activity of Structure of the L. Blandensis Dgtpase Bound to Datp:
3.1.5.1;

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Structure of the L. Blandensis Dgtpase Bound to Datp (pdb code 7tu6). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 6 binding sites of Magnesium where determined in the Structure of the L. Blandensis Dgtpase Bound to Datp, PDB code: 7tu6:
Jump to Magnesium binding site number: 1; 2; 3; 4; 5; 6;

Magnesium binding site 1 out of 6 in 7tu6

Go back to Magnesium Binding Sites List in 7tu6
Magnesium binding site 1 out of 6 in the Structure of the L. Blandensis Dgtpase Bound to Datp


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Structure of the L. Blandensis Dgtpase Bound to Datp within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg503

b:32.9
occ:1.00
NE2 A:HIS116 1.9 50.9 1.0
OD2 A:ASP117 2.2 50.9 1.0
OD1 A:ASP253 2.2 50.9 1.0
NE2 A:HIS68 2.2 50.9 1.0
CE1 A:HIS116 2.7 50.9 1.0
CD2 A:HIS116 3.1 50.9 1.0
CD2 A:HIS68 3.2 50.9 1.0
CE1 A:HIS68 3.2 50.9 1.0
CG A:ASP117 3.3 50.9 1.0
CG A:ASP253 3.3 50.9 1.0
OD1 A:ASP117 3.8 50.9 1.0
ND1 A:HIS116 3.9 50.9 1.0
CG A:HIS116 4.1 50.9 1.0
OD2 A:ASP253 4.1 50.9 1.0
CB A:ASP253 4.1 50.9 1.0
ND1 A:HIS68 4.3 50.9 1.0
CG A:HIS68 4.3 50.9 1.0
CB A:ASP117 4.5 50.9 1.0
CG2 A:VAL72 4.6 50.9 1.0
O1A A:DTP501 4.6 61.4 1.0
NH1 A:ARG65 4.7 50.9 1.0
O A:ASP253 4.9 50.9 1.0
CA A:ASP253 4.9 50.9 1.0

Magnesium binding site 2 out of 6 in 7tu6

Go back to Magnesium Binding Sites List in 7tu6
Magnesium binding site 2 out of 6 in the Structure of the L. Blandensis Dgtpase Bound to Datp


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Structure of the L. Blandensis Dgtpase Bound to Datp within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mg502

b:32.9
occ:1.00
NE2 B:HIS116 1.9 50.9 1.0
OD2 B:ASP117 2.2 50.9 1.0
OD1 B:ASP253 2.2 50.9 1.0
NE2 B:HIS68 2.2 50.9 1.0
CE1 B:HIS116 2.7 50.9 1.0
CD2 B:HIS116 3.1 50.9 1.0
CD2 B:HIS68 3.2 50.9 1.0
CE1 B:HIS68 3.2 50.9 1.0
CG B:ASP117 3.3 50.9 1.0
CG B:ASP253 3.3 50.9 1.0
OD1 B:ASP117 3.8 50.9 1.0
ND1 B:HIS116 3.9 50.9 1.0
CG B:HIS116 4.1 50.9 1.0
OD2 B:ASP253 4.1 50.9 1.0
CB B:ASP253 4.1 50.9 1.0
ND1 B:HIS68 4.3 50.9 1.0
CG B:HIS68 4.3 50.9 1.0
CB B:ASP117 4.5 50.9 1.0
CG2 B:VAL72 4.6 50.9 1.0
O1A B:DTP501 4.6 61.4 1.0
NH1 B:ARG65 4.7 50.9 1.0
O B:ASP253 4.9 50.9 1.0
CA B:ASP253 4.9 50.9 1.0

Magnesium binding site 3 out of 6 in 7tu6

Go back to Magnesium Binding Sites List in 7tu6
Magnesium binding site 3 out of 6 in the Structure of the L. Blandensis Dgtpase Bound to Datp


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of Structure of the L. Blandensis Dgtpase Bound to Datp within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Mg502

b:32.9
occ:1.00
NE2 C:HIS116 1.9 50.9 1.0
OD2 C:ASP117 2.2 50.9 1.0
OD1 C:ASP253 2.2 50.9 1.0
NE2 C:HIS68 2.2 50.9 1.0
CE1 C:HIS116 2.7 50.9 1.0
CD2 C:HIS116 3.1 50.9 1.0
CD2 C:HIS68 3.2 50.9 1.0
CE1 C:HIS68 3.2 50.9 1.0
CG C:ASP117 3.3 50.9 1.0
CG C:ASP253 3.3 50.9 1.0
OD1 C:ASP117 3.8 50.9 1.0
ND1 C:HIS116 3.9 50.9 1.0
CG C:HIS116 4.1 50.9 1.0
OD2 C:ASP253 4.1 50.9 1.0
CB C:ASP253 4.1 50.9 1.0
ND1 C:HIS68 4.3 50.9 1.0
CG C:HIS68 4.3 50.9 1.0
CB C:ASP117 4.5 50.9 1.0
CG2 C:VAL72 4.6 50.9 1.0
O1A C:DTP501 4.6 61.4 1.0
NH1 C:ARG65 4.7 50.9 1.0
O C:ASP253 4.9 50.9 1.0
CA C:ASP253 4.9 50.9 1.0

Magnesium binding site 4 out of 6 in 7tu6

Go back to Magnesium Binding Sites List in 7tu6
Magnesium binding site 4 out of 6 in the Structure of the L. Blandensis Dgtpase Bound to Datp


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 4 of Structure of the L. Blandensis Dgtpase Bound to Datp within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Mg503

b:32.9
occ:1.00
NE2 D:HIS116 1.9 50.9 1.0
OD2 D:ASP117 2.2 50.9 1.0
OD1 D:ASP253 2.2 50.9 1.0
NE2 D:HIS68 2.2 50.9 1.0
CE1 D:HIS116 2.7 50.9 1.0
CD2 D:HIS116 3.1 50.9 1.0
CD2 D:HIS68 3.2 50.9 1.0
CE1 D:HIS68 3.2 50.9 1.0
CG D:ASP117 3.3 50.9 1.0
CG D:ASP253 3.3 50.9 1.0
OD1 D:ASP117 3.8 50.9 1.0
ND1 D:HIS116 3.9 50.9 1.0
CG D:HIS116 4.1 50.9 1.0
OD2 D:ASP253 4.1 50.9 1.0
CB D:ASP253 4.1 50.9 1.0
ND1 D:HIS68 4.3 50.9 1.0
CG D:HIS68 4.3 50.9 1.0
CB D:ASP117 4.5 50.9 1.0
CG2 D:VAL72 4.6 50.9 1.0
O1A D:DTP502 4.6 61.4 1.0
NH1 D:ARG65 4.7 50.9 1.0
O D:ASP253 4.9 50.9 1.0
CA D:ASP253 4.9 50.9 1.0

Magnesium binding site 5 out of 6 in 7tu6

Go back to Magnesium Binding Sites List in 7tu6
Magnesium binding site 5 out of 6 in the Structure of the L. Blandensis Dgtpase Bound to Datp


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 5 of Structure of the L. Blandensis Dgtpase Bound to Datp within 5.0Å range:
probe atom residue distance (Å) B Occ
E:Mg502

b:32.9
occ:1.00
NE2 E:HIS116 1.9 50.9 1.0
OD2 E:ASP117 2.2 50.9 1.0
OD1 E:ASP253 2.2 50.9 1.0
NE2 E:HIS68 2.2 50.9 1.0
CE1 E:HIS116 2.7 50.9 1.0
CD2 E:HIS116 3.1 50.9 1.0
CD2 E:HIS68 3.2 50.9 1.0
CE1 E:HIS68 3.2 50.9 1.0
CG E:ASP117 3.3 50.9 1.0
CG E:ASP253 3.3 50.9 1.0
OD1 E:ASP117 3.8 50.9 1.0
ND1 E:HIS116 3.9 50.9 1.0
CG E:HIS116 4.1 50.9 1.0
OD2 E:ASP253 4.1 50.9 1.0
CB E:ASP253 4.1 50.9 1.0
ND1 E:HIS68 4.3 50.9 1.0
CG E:HIS68 4.3 50.9 1.0
CB E:ASP117 4.5 50.9 1.0
CG2 E:VAL72 4.6 50.9 1.0
O1A E:DTP501 4.6 61.4 1.0
NH1 E:ARG65 4.7 50.9 1.0
O E:ASP253 4.9 50.9 1.0
CA E:ASP253 4.9 50.9 1.0

Magnesium binding site 6 out of 6 in 7tu6

Go back to Magnesium Binding Sites List in 7tu6
Magnesium binding site 6 out of 6 in the Structure of the L. Blandensis Dgtpase Bound to Datp


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 6 of Structure of the L. Blandensis Dgtpase Bound to Datp within 5.0Å range:
probe atom residue distance (Å) B Occ
F:Mg503

b:32.9
occ:1.00
NE2 F:HIS116 1.9 50.9 1.0
OD2 F:ASP117 2.2 50.9 1.0
OD1 F:ASP253 2.2 50.9 1.0
NE2 F:HIS68 2.2 50.9 1.0
CE1 F:HIS116 2.7 50.9 1.0
CD2 F:HIS116 3.1 50.9 1.0
CD2 F:HIS68 3.2 50.9 1.0
CE1 F:HIS68 3.2 50.9 1.0
CG F:ASP117 3.3 50.9 1.0
CG F:ASP253 3.3 50.9 1.0
OD1 F:ASP117 3.8 50.9 1.0
ND1 F:HIS116 3.9 50.9 1.0
CG F:HIS116 4.1 50.9 1.0
OD2 F:ASP253 4.1 50.9 1.0
CB F:ASP253 4.1 50.9 1.0
ND1 F:HIS68 4.3 50.9 1.0
CG F:HIS68 4.3 50.9 1.0
CB F:ASP117 4.5 50.9 1.0
CG2 F:VAL72 4.6 50.9 1.0
O1A F:DTP502 4.6 61.4 1.0
NH1 F:ARG65 4.7 50.9 1.0
O F:ASP253 4.9 50.9 1.0
CA F:ASP253 4.9 50.9 1.0

Reference:

B.P.Klemm, A.P.Sikkema, A.L.Hsu, J.C.Horng, T.M.T.Hall, M.J.Borgnia, R.M.Schaaper. High-Resolution Structures of the SAMHD1 Dgtpase Homolog From Leeuwenhoekiella Blandensis Reveal A Novel Mechanism of Allosteric Activation By Datp. J.Biol.Chem. V. 298 02073 2022.
ISSN: ESSN 1083-351X
PubMed: 35643313
DOI: 10.1016/J.JBC.2022.102073
Page generated: Thu Oct 3 09:29:36 2024

Last articles

Mg in 7WKL
Mg in 7WMB
Mg in 7WQK
Mg in 7WQB
Mg in 7WJ6
Mg in 7WJR
Mg in 7WKM
Mg in 7WL6
Mg in 7WJV
Mg in 7WI4
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy