Magnesium in PDB 7tub: The Beta-Tubulin Folding Intermediate IV

The structure of The Beta-Tubulin Folding Intermediate IV also contains other interesting chemical elements:

Aluminium	(Al)	8 atoms
Fluorine	(F)	24 atoms

The binding sites of Magnesium atom in the The Beta-Tubulin Folding Intermediate IV (pdb code 7tub). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 8 binding sites of Magnesium where determined in the The Beta-Tubulin Folding Intermediate IV, PDB code: 7tub:
Jump to Magnesium binding site number: 1; 2; 3; 4; 5; 6; 7; 8;

Magnesium binding site 1 out of 8 in the The Beta-Tubulin Folding Intermediate IV


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of The Beta-Tubulin Folding Intermediate IV within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg601 b:51.9 occ:1.00 OD2 B:ASP99 1.9 49.9 1.0 O1A B:ADP602 2.3 49.4 1.0 OD1 B:ASP99 2.4 49.9 1.0 CG B:ASP99 2.4 49.9 1.0 O1B B:ADP602 2.6 49.4 1.0 PA B:ADP602 3.5 49.4 1.0 OG B:SER170 3.6 50.5 1.0 O5' B:ADP602 3.7 49.4 1.0 PB B:ADP602 3.9 49.4 1.0 CB B:ASP99 3.9 49.9 1.0 O3A B:ADP602 4.0 49.4 1.0 C5' B:ADP602 4.1 49.4 1.0 AL B:AF3603 4.3 53.6 1.0 F2 B:AF3603 4.4 53.6 1.0 O3B B:ADP602 4.5 49.4 1.0 F3 B:AF3603 4.5 53.6 1.0 O B:SER167 4.5 51.6 1.0 N B:GLY100 4.6 47.8 1.0 OD2 B:ASP394 4.6 48.3 1.0 CA B:ASP99 4.8 49.9 1.0 O2A B:ADP602 4.8 49.4 1.0 CB B:SER170 4.9 50.5 1.0

Magnesium binding site 2 out of 8 in the The Beta-Tubulin Folding Intermediate IV


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of The Beta-Tubulin Folding Intermediate IV within 5.0Å range: probe atom residue distance (Å) B Occ C:Mg601 b:56.0 occ:1.00 O1A C:ADP602 2.3 52.9 1.0 OD1 C:ASP92 2.6 49.8 1.0 O C:ALA162 3.1 49.8 1.0 OD2 C:ASP92 3.2 49.8 1.0 CG C:ASP92 3.3 49.8 1.0 PA C:ADP602 3.4 52.9 1.0 F2 C:AF3603 3.5 51.0 1.0 NZ C:LYS166 3.6 47.5 1.0 O2A C:ADP602 3.6 52.9 1.0 CA C:ALA162 3.8 49.8 1.0 C C:ALA162 3.8 49.8 1.0 O1B C:ADP602 4.0 52.9 1.0 CB C:ALA162 4.2 49.8 1.0 O5' C:ADP602 4.4 52.9 1.0 OG C:SER165 4.4 48.4 1.0 OD2 C:ASP391 4.6 48.7 1.0 O3A C:ADP602 4.6 52.9 1.0 AL C:AF3603 4.7 51.0 1.0 O C:THR161 4.8 49.5 1.0 CB C:ASP92 4.8 49.8 1.0 CE C:LYS166 4.8 47.5 1.0 PB C:ADP602 5.0 52.9 1.0

Magnesium binding site 3 out of 8 in the The Beta-Tubulin Folding Intermediate IV


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of The Beta-Tubulin Folding Intermediate IV within 5.0Å range: probe atom residue distance (Å) B Occ D:Mg601 b:50.1 occ:1.00 AL D:AF3603 1.8 50.4 1.0 F1 D:AF3603 1.9 50.4 1.0 O3B D:ADP602 2.2 48.5 1.0 O1B D:ADP602 2.2 48.5 1.0 O3A D:ADP602 2.2 48.5 1.0 PB D:ADP602 2.3 48.5 1.0 O1A D:ADP602 2.7 48.5 1.0 F2 D:AF3603 2.8 50.4 1.0 OD1 D:ASP104 2.9 46.5 1.0 F3 D:AF3603 2.9 50.4 1.0 PA D:ADP602 3.0 48.5 1.0 O2B D:ADP602 3.8 48.5 1.0 O5' D:ADP602 4.0 48.5 1.0 N D:GLY105 4.0 43.5 1.0 CG D:ASP104 4.1 46.5 1.0 O2A D:ADP602 4.3 48.5 1.0 CG2 D:THR107 4.5 42.6 1.0 CA D:GLY105 4.7 43.5 1.0 OD2 D:ASP104 4.7 46.5 1.0 NZ D:LYS176 4.9 50.8 1.0 OD2 D:ASP404 4.9 48.0 1.0 CE D:LYS176 4.9 50.8 1.0 CA D:ASP104 4.9 46.5 1.0 N D:THR106 5.0 43.5 1.0 C D:ASP104 5.0 46.5 1.0

Magnesium binding site 4 out of 8 in the The Beta-Tubulin Folding Intermediate IV


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 4 of The Beta-Tubulin Folding Intermediate IV within 5.0Å range: probe atom residue distance (Å) B Occ E:Mg601 b:44.3 occ:1.00 O1A E:ADP602 2.0 41.8 1.0 OD1 E:ASP97 2.7 41.7 1.0 OD2 E:ASP97 2.9 41.7 1.0 CG E:ASP97 3.2 41.7 1.0 O1B E:ADP602 3.2 41.8 1.0 PA E:ADP602 3.5 41.8 1.0 O E:THR166 3.8 42.9 1.0 NZ E:LYS170 3.9 43.6 1.0 OG E:SER169 4.0 43.1 1.0 CG2 E:THR166 4.0 42.9 1.0 F2 E:AF3603 4.1 43.0 1.0 O5' E:ADP602 4.2 41.8 1.0 PB E:ADP602 4.2 41.8 1.0 O3A E:ADP602 4.2 41.8 1.0 O3B E:ADP602 4.4 41.8 1.0 CA E:THR166 4.5 42.9 1.0 O2A E:ADP602 4.5 41.8 1.0 C E:THR166 4.6 42.9 1.0 CB E:ASP97 4.7 41.7 1.0 CB E:THR166 4.8 42.9 1.0 AL E:AF3603 4.9 43.0 1.0 OD2 E:ASP392 4.9 42.1 1.0

Magnesium binding site 5 out of 8 in the The Beta-Tubulin Folding Intermediate IV


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 5 of The Beta-Tubulin Folding Intermediate IV within 5.0Å range: probe atom residue distance (Å) B Occ F:Mg601 b:45.2 occ:1.00 O1A F:ADP602 2.1 40.2 1.0 OD1 F:ASP104 2.9 43.5 1.0 OD2 F:ASP407 3.4 41.2 1.0 O1B F:ADP602 3.4 40.2 1.0 PA F:ADP602 3.5 40.2 1.0 O F:SER170 3.6 43.1 1.0 OD2 F:ASP104 3.6 43.5 1.0 CG F:ASP104 3.6 43.5 1.0 F1 F:AF3603 3.8 43.5 1.0 F2 F:AF3603 3.8 43.5 1.0 O5' F:ADP602 4.0 40.2 1.0 CE F:LYS174 4.1 41.1 1.0 C F:SER170 4.3 43.1 1.0 CA F:SER170 4.3 43.1 1.0 AL F:AF3603 4.4 43.5 1.0 PB F:ADP602 4.4 40.2 1.0 O3A F:ADP602 4.5 40.2 1.0 CG F:ASP407 4.5 41.2 1.0 CB F:SER170 4.5 43.1 1.0 O3B F:ADP602 4.6 40.2 1.0 O2A F:ADP602 4.6 40.2 1.0 CB F:SER173 4.6 40.4 1.0 NZ F:LYS174 4.9 41.1 1.0

Magnesium binding site 6 out of 8 in the The Beta-Tubulin Folding Intermediate IV


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 6 of The Beta-Tubulin Folding Intermediate IV within 5.0Å range: probe atom residue distance (Å) B Occ G:Mg601 b:48.0 occ:1.00 AL G:AF3603 1.8 48.2 1.0 O3B G:ADP602 1.9 45.2 1.0 F1 G:AF3603 1.9 48.2 1.0 O1B G:ADP602 2.1 45.2 1.0 PB G:ADP602 2.4 45.2 1.0 F2 G:AF3603 2.4 48.2 1.0 F3 G:AF3603 2.5 48.2 1.0 O1A G:ADP602 2.7 45.2 1.0 OD1 G:ASP88 3.2 44.8 1.0 O3A G:ADP602 3.2 45.2 1.0 PA G:ADP602 3.5 45.2 1.0 O2B G:ADP602 3.8 45.2 1.0 N G:GLY89 4.0 42.4 1.0 NZ G:LYS159 4.3 44.9 1.0 CG G:ASP88 4.4 44.8 1.0 OD2 G:ASP394 4.4 45.3 1.0 CA G:GLY89 4.5 42.4 1.0 N G:THR90 4.6 40.0 1.0 O2A G:ADP602 4.6 45.2 1.0 O5' G:ADP602 4.6 45.2 1.0 CE G:LYS159 4.8 44.9 1.0 OG1 G:THR91 4.9 38.5 1.0

Magnesium binding site 7 out of 8 in the The Beta-Tubulin Folding Intermediate IV


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 7 of The Beta-Tubulin Folding Intermediate IV within 5.0Å range: probe atom residue distance (Å) B Occ H:Mg601 b:51.0 occ:1.00 O1B H:ADP602 2.2 45.4 1.0 OD2 H:ASP93 2.6 47.1 1.0 OD1 H:ASP93 2.7 47.1 1.0 O1A H:ADP602 2.8 45.4 1.0 CG H:ASP93 2.9 47.1 1.0 O5' H:ADP602 3.4 45.4 1.0 PA H:ADP602 3.6 45.4 1.0 PB H:ADP602 3.6 45.4 1.0 O3A H:ADP602 4.1 45.4 1.0 C5' H:ADP602 4.3 45.4 1.0 CB H:ASP93 4.4 47.1 1.0 N H:GLY94 4.4 42.7 1.0 O2B H:ADP602 4.4 45.4 1.0 O3B H:ADP602 4.6 45.4 1.0 O H:SER159 4.7 44.3 1.0 CA H:GLY94 5.0 42.7 1.0

Magnesium binding site 8 out of 8 in the The Beta-Tubulin Folding Intermediate IV


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 8 of The Beta-Tubulin Folding Intermediate IV within 5.0Å range: probe atom residue distance (Å) B Occ I:Mg601 b:42.6 occ:1.00 O1A I:ADP602 2.2 43.7 1.0 OD2 I:ASP90 2.2 41.7 1.0 OD1 I:ASP90 2.4 41.7 1.0 F2 I:AF3603 2.5 44.5 1.0 NZ I:LYS159 2.5 44.3 1.0 CG I:ASP90 2.6 41.7 1.0 O1B I:ADP602 3.4 43.7 1.0 PA I:ADP602 3.6 43.7 1.0 OG1 I:THR158 3.8 45.2 1.0 CE I:LYS159 3.9 44.3 1.0 AL I:AF3603 4.0 44.5 1.0 O3A I:ADP602 4.1 43.7 1.0 CB I:ASP90 4.1 41.7 1.0 O I:SER155 4.2 45.8 1.0 PB I:ADP602 4.3 43.7 1.0 CD I:LYS159 4.4 44.3 1.0 O5' I:ADP602 4.4 43.7 1.0 OD2 I:ASP393 4.4 45.7 1.0 CB I:SER155 4.6 45.8 1.0 CA I:SER155 4.6 45.8 1.0 O3B I:ADP602 4.7 43.7 1.0 F3 I:AF3603 4.7 44.5 1.0 O2A I:ADP602 4.8 43.7 1.0 C I:SER155 4.9 45.8 1.0 CA I:ASP90 5.0 41.7 1.0

D.Gestaut, Y.Zhao, J.Park, B.Ma, A.Leitner, M.Collier, G.Pintilie, S.H.Roh, W.Chiu, J.Frydman. Structural Visualization of the Tubulin Folding Pathway Directed By Human Chaperonin Tric/Cct. Cell V. 185 4770 2022.
ISSN: ISSN 1097-4172
PubMed: 36493755
DOI: 10.1016/J.CELL.2022.11.014