Magnesium in PDB 7twc: Crystal Structure of the Putative Oxidoreductase of DUF1479-Containing Protein Family YPO2976 From Yersinia Pestis Bound to Caps

Protein crystallography data

The structure of Crystal Structure of the Putative Oxidoreductase of DUF1479-Containing Protein Family YPO2976 From Yersinia Pestis Bound to Caps, PDB code: 7twc was solved by Y.Kim, G.Chhor, M.Endres, G.Babnigg, O.Schneewind, A.Joachimiak, Center Forstructural Genomics Of Infectious Diseases (Csgid), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 24.14 / 1.85
Space group C 1 2 1
Cell size a, b, c (Å), α, β, γ (°) 115.964, 54.699, 93.163, 90, 124.17, 90
R / Rfree (%) 15.6 / 19.4

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Crystal Structure of the Putative Oxidoreductase of DUF1479-Containing Protein Family YPO2976 From Yersinia Pestis Bound to Caps (pdb code 7twc). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Crystal Structure of the Putative Oxidoreductase of DUF1479-Containing Protein Family YPO2976 From Yersinia Pestis Bound to Caps, PDB code: 7twc:

Magnesium binding site 1 out of 1 in 7twc

Go back to Magnesium Binding Sites List in 7twc
Magnesium binding site 1 out of 1 in the Crystal Structure of the Putative Oxidoreductase of DUF1479-Containing Protein Family YPO2976 From Yersinia Pestis Bound to Caps


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of the Putative Oxidoreductase of DUF1479-Containing Protein Family YPO2976 From Yersinia Pestis Bound to Caps within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg502

b:30.9
occ:1.00
O A:HOH793 2.1 34.0 1.0
NE2 A:HIS340 2.2 18.5 1.0
O A:HOH604 2.3 36.5 1.0
NE2 A:HIS200 2.4 22.1 1.0
OD2 A:ASP202 2.4 28.2 1.0
O2 A:PO4503 2.7 63.5 1.0
CE1 A:HIS340 3.1 20.8 1.0
CD2 A:HIS200 3.1 24.6 1.0
CD2 A:HIS340 3.2 13.3 1.0
CG A:ASP202 3.2 29.0 1.0
OD1 A:ASP202 3.3 20.2 1.0
CE1 A:HIS200 3.5 24.3 1.0
NE2 A:GLN256 4.2 25.8 1.0
ND1 A:HIS340 4.2 17.5 1.0
P A:PO4503 4.2 79.1 1.0
CG A:HIS340 4.3 12.7 1.0
CG A:HIS200 4.4 20.3 1.0
ND1 A:HIS200 4.5 22.7 1.0
CB A:ASP202 4.6 23.7 1.0
O1 A:PO4503 4.7 65.6 1.0
O3 A:PO4503 4.9 64.3 1.0

Reference:

Y.Kim, G.Chhor, M.Endres, G.Babnigg, O.Schneewind, A.Joachimiak, Center For Structural Genomics Of Infectious Diseases(Csgid). Crystal Structure of the Putative Oxidoreductase of DUF1479-Containing Protein Family YPO2976 From Yersinia Pestis Bound to Caps To Be Published.
Page generated: Thu Apr 6 23:33:35 2023

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