Magnesium in PDB 7txu: Cyanophycin Synthetase 1 From Synechocystis Sp. UTEX2470 with Atp and 16X(Asp-Arg)

Enzymatic activity of Cyanophycin Synthetase 1 From Synechocystis Sp. UTEX2470 with Atp and 16X(Asp-Arg)

All present enzymatic activity of Cyanophycin Synthetase 1 From Synechocystis Sp. UTEX2470 with Atp and 16X(Asp-Arg):
6.3.2.29; 6.3.2.30;

Other elements in 7txu:

The structure of Cyanophycin Synthetase 1 From Synechocystis Sp. UTEX2470 with Atp and 16X(Asp-Arg) also contains other interesting chemical elements:

Zinc (Zn) 4 atoms

Magnesium Binding Sites:

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 16;

Binding sites:

The binding sites of Magnesium atom in the Cyanophycin Synthetase 1 From Synechocystis Sp. UTEX2470 with Atp and 16X(Asp-Arg) (pdb code 7txu). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 16 binding sites of Magnesium where determined in the Cyanophycin Synthetase 1 From Synechocystis Sp. UTEX2470 with Atp and 16X(Asp-Arg), PDB code: 7txu:
Jump to Magnesium binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Magnesium binding site 1 out of 16 in 7txu

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Magnesium binding site 1 out of 16 in the Cyanophycin Synthetase 1 From Synechocystis Sp. UTEX2470 with Atp and 16X(Asp-Arg)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Cyanophycin Synthetase 1 From Synechocystis Sp. UTEX2470 with Atp and 16X(Asp-Arg) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg901

b:32.3
occ:1.00
 OD2 A:ASP431 2.4 17.5 1.0
O1G A:ATP905 2.7 40.5 1.0
OE1 A:GLU450 2.9 16.9 1.0
CG A:ASP431 3.5 17.5 1.0
O3A A:ATP905 3.5 40.5 1.0
OD1 A:ASP431 3.9 17.5 1.0
CD A:GLU450 4.0 16.9 1.0
PG A:ATP905 4.0 40.5 1.0
O5' A:ATP905 4.1 40.5 1.0
PA A:ATP905 4.2 40.5 1.0
O1A A:ATP905 4.4 40.5 1.0
ND2 A:ASN452 4.4 16.6 1.0
O3B A:ATP905 4.5 40.5 1.0
NH2 A:ARG309 4.5 30.6 1.0
PB A:ATP905 4.6 40.5 1.0
CB A:ASP431 4.7 17.5 1.0
CB A:GLU450 4.8 16.9 1.0
OE2 A:GLU450 4.8 16.9 1.0
CG A:GLU450 4.8 16.9 1.0
O2G A:ATP905 4.8 40.5 1.0
O3G A:ATP905 4.9 40.5 1.0
NH2 A:ARG323 4.9 23.5 1.0

Magnesium binding site 2 out of 16 in 7txu

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Magnesium binding site 2 out of 16 in the Cyanophycin Synthetase 1 From Synechocystis Sp. UTEX2470 with Atp and 16X(Asp-Arg)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Cyanophycin Synthetase 1 From Synechocystis Sp. UTEX2470 with Atp and 16X(Asp-Arg) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg902

b:36.4
occ:1.00
 O3G A:ATP906 2.5 29.6 1.0
NE2 A:HIS586 2.6 46.0 1.0
CE1 A:HIS586 3.4 46.0 1.0
CD2 A:HIS586 3.7 46.0 1.0
PG A:ATP906 3.9 29.6 1.0
O2G A:ATP906 4.3 29.6 1.0
O3B A:ATP906 4.6 29.6 1.0
ND1 A:HIS586 4.6 46.0 1.0
O A:THR496 4.6 15.5 1.0
CG A:HIS586 4.7 46.0 1.0
NZ A:LYS499 4.7 15.7 1.0

Magnesium binding site 3 out of 16 in 7txu

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Magnesium binding site 3 out of 16 in the Cyanophycin Synthetase 1 From Synechocystis Sp. UTEX2470 with Atp and 16X(Asp-Arg)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of Cyanophycin Synthetase 1 From Synechocystis Sp. UTEX2470 with Atp and 16X(Asp-Arg) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg903

b:21.6
occ:1.00
 OE2 A:GLU558 1.8 18.4 1.0
O1G A:ATP906 1.9 29.6 1.0
OG1 A:THR500 2.1 18.9 1.0
O2B A:ATP906 2.4 29.6 1.0
OG1 A:THR522 2.5 32.0 1.0
CD A:GLU558 2.7 18.4 1.0
OE1 A:GLU558 2.8 18.4 1.0
CG2 A:THR522 3.0 32.0 1.0
CB A:THR522 3.3 32.0 1.0
PG A:ATP906 3.4 29.6 1.0
CB A:THR500 3.5 18.9 1.0
PB A:ATP906 3.7 29.6 1.0
O1B A:ATP906 4.1 29.6 1.0
O3B A:ATP906 4.1 29.6 1.0
N A:THR522 4.1 32.0 1.0
N A:THR500 4.1 18.9 1.0
CG A:GLU558 4.2 18.4 1.0
CA A:THR500 4.2 18.9 1.0
O3G A:ATP906 4.3 29.6 1.0
O2G A:ATP906 4.3 29.6 1.0
CA A:THR522 4.3 32.0 1.0
O1A A:ATP906 4.4 29.6 1.0
CG2 A:THR500 4.4 18.9 1.0
CB A:LYS499 4.8 15.7 1.0
CE A:LYS499 4.8 15.7 1.0

Magnesium binding site 4 out of 16 in 7txu

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Magnesium binding site 4 out of 16 in the Cyanophycin Synthetase 1 From Synechocystis Sp. UTEX2470 with Atp and 16X(Asp-Arg)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 4 of Cyanophycin Synthetase 1 From Synechocystis Sp. UTEX2470 with Atp and 16X(Asp-Arg) within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mg901

b:29.6
occ:1.00
 OD2 B:ASP431 2.4 17.6 1.0
O1G B:ATP905 2.7 42.0 1.0
OE1 B:GLU450 2.9 17.0 1.0
CG B:ASP431 3.5 17.6 1.0
O3A B:ATP905 3.5 42.0 1.0
OD1 B:ASP431 3.9 17.6 1.0
CD B:GLU450 4.0 17.0 1.0
PG B:ATP905 4.0 42.0 1.0
O5' B:ATP905 4.1 42.0 1.0
PA B:ATP905 4.2 42.0 1.0
O1A B:ATP905 4.4 42.0 1.0
ND2 B:ASN452 4.4 16.8 1.0
O3B B:ATP905 4.5 42.0 1.0
NH2 B:ARG309 4.5 30.6 1.0
PB B:ATP905 4.6 42.0 1.0
CB B:ASP431 4.7 17.6 1.0
CB B:GLU450 4.8 17.0 1.0
OE2 B:GLU450 4.8 17.0 1.0
CG B:GLU450 4.8 17.0 1.0
O2G B:ATP905 4.8 42.0 1.0
O3G B:ATP905 4.9 42.0 1.0
NH2 B:ARG323 4.9 23.9 1.0

Magnesium binding site 5 out of 16 in 7txu

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Magnesium binding site 5 out of 16 in the Cyanophycin Synthetase 1 From Synechocystis Sp. UTEX2470 with Atp and 16X(Asp-Arg)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 5 of Cyanophycin Synthetase 1 From Synechocystis Sp. UTEX2470 with Atp and 16X(Asp-Arg) within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mg902

b:38.0
occ:1.00
 O3G B:ATP906 2.5 29.7 1.0
NE2 B:HIS586 2.6 47.9 1.0
CE1 B:HIS586 3.4 47.9 1.0
CD2 B:HIS586 3.7 47.9 1.0
PG B:ATP906 3.9 29.7 1.0
O2G B:ATP906 4.3 29.7 1.0
O3B B:ATP906 4.6 29.7 1.0
ND1 B:HIS586 4.6 47.9 1.0
O B:THR496 4.6 17.2 1.0
CG B:HIS586 4.7 47.9 1.0
NZ B:LYS499 4.7 16.8 1.0

Magnesium binding site 6 out of 16 in 7txu

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Magnesium binding site 6 out of 16 in the Cyanophycin Synthetase 1 From Synechocystis Sp. UTEX2470 with Atp and 16X(Asp-Arg)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 6 of Cyanophycin Synthetase 1 From Synechocystis Sp. UTEX2470 with Atp and 16X(Asp-Arg) within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mg903

b:22.5
occ:1.00
 OE2 B:GLU558 1.8 19.2 1.0
O1G B:ATP906 1.9 29.7 1.0
OG1 B:THR500 2.1 20.6 1.0
O2B B:ATP906 2.4 29.7 1.0
OG1 B:THR522 2.5 32.5 1.0
CD B:GLU558 2.7 19.2 1.0
OE1 B:GLU558 2.8 19.2 1.0
CG2 B:THR522 3.0 32.5 1.0
CB B:THR522 3.3 32.5 1.0
PG B:ATP906 3.4 29.7 1.0
CB B:THR500 3.5 20.6 1.0
PB B:ATP906 3.7 29.7 1.0
O1B B:ATP906 4.1 29.7 1.0
O3B B:ATP906 4.1 29.7 1.0
N B:THR522 4.1 32.5 1.0
N B:THR500 4.1 20.6 1.0
CG B:GLU558 4.2 19.2 1.0
CA B:THR500 4.2 20.6 1.0
O3G B:ATP906 4.3 29.7 1.0
O2G B:ATP906 4.3 29.7 1.0
CA B:THR522 4.3 32.5 1.0
O1A B:ATP906 4.4 29.7 1.0
CG2 B:THR500 4.4 20.6 1.0
CB B:LYS499 4.8 16.8 1.0
CE B:LYS499 4.8 16.8 1.0

Magnesium binding site 7 out of 16 in 7txu

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Magnesium binding site 7 out of 16 in the Cyanophycin Synthetase 1 From Synechocystis Sp. UTEX2470 with Atp and 16X(Asp-Arg)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 7 of Cyanophycin Synthetase 1 From Synechocystis Sp. UTEX2470 with Atp and 16X(Asp-Arg) within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mg907

b:43.1
occ:1.00
 CD B:ARG100 4.0 37.6 1.0
C J:7ID4 4.2 48.1 1.0
O J:7ID4 4.2 48.1 1.0
OG B:SER60 4.2 65.7 1.0
O B:GLY99 4.6 35.8 1.0
CA B:ARG100 4.6 37.6 1.0
NE B:ARG100 4.7 37.6 1.0
N B:THR101 4.8 43.5 1.0
ZN B:ZN904 4.8 101.3 1.0
NH1 B:ARG100 4.9 37.6 1.0

Magnesium binding site 8 out of 16 in 7txu

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Magnesium binding site 8 out of 16 in the Cyanophycin Synthetase 1 From Synechocystis Sp. UTEX2470 with Atp and 16X(Asp-Arg)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 8 of Cyanophycin Synthetase 1 From Synechocystis Sp. UTEX2470 with Atp and 16X(Asp-Arg) within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Mg901

b:32.4
occ:1.00
 OD2 C:ASP431 2.4 19.1 1.0
O1G C:ATP905 2.7 43.4 1.0
OE1 C:GLU450 2.9 17.8 1.0
CG C:ASP431 3.5 19.1 1.0
O3A C:ATP905 3.5 43.4 1.0
OD1 C:ASP431 3.9 19.1 1.0
CD C:GLU450 4.0 17.8 1.0
PG C:ATP905 4.0 43.4 1.0
O5' C:ATP905 4.1 43.4 1.0
PA C:ATP905 4.2 43.4 1.0
O1A C:ATP905 4.4 43.4 1.0
ND2 C:ASN452 4.4 17.1 1.0
O3B C:ATP905 4.5 43.4 1.0
NH2 C:ARG309 4.5 30.6 1.0
PB C:ATP905 4.6 43.4 1.0
CB C:ASP431 4.7 19.1 1.0
CB C:GLU450 4.8 17.8 1.0
OE2 C:GLU450 4.8 17.8 1.0
CG C:GLU450 4.8 17.8 1.0
O2G C:ATP905 4.8 43.4 1.0
O3G C:ATP905 4.9 43.4 1.0
NH2 C:ARG323 4.9 25.6 1.0

Magnesium binding site 9 out of 16 in 7txu

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Magnesium binding site 9 out of 16 in the Cyanophycin Synthetase 1 From Synechocystis Sp. UTEX2470 with Atp and 16X(Asp-Arg)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 9 of Cyanophycin Synthetase 1 From Synechocystis Sp. UTEX2470 with Atp and 16X(Asp-Arg) within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Mg902

b:34.7
occ:1.00
 O3G C:ATP906 2.5 30.4 1.0
NE2 C:HIS586 2.6 46.8 1.0
CE1 C:HIS586 3.4 46.8 1.0
CD2 C:HIS586 3.7 46.8 1.0
PG C:ATP906 3.9 30.4 1.0
O2G C:ATP906 4.3 30.4 1.0
O3B C:ATP906 4.6 30.4 1.0
ND1 C:HIS586 4.6 46.8 1.0
O C:THR496 4.6 17.8 1.0
CG C:HIS586 4.7 46.8 1.0
NZ C:LYS499 4.7 17.3 1.0

Magnesium binding site 10 out of 16 in 7txu

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Magnesium binding site 10 out of 16 in the Cyanophycin Synthetase 1 From Synechocystis Sp. UTEX2470 with Atp and 16X(Asp-Arg)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 10 of Cyanophycin Synthetase 1 From Synechocystis Sp. UTEX2470 with Atp and 16X(Asp-Arg) within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Mg903

b:23.1
occ:1.00
 OE2 C:GLU558 1.8 19.3 1.0
O1G C:ATP906 1.9 30.4 1.0
OG1 C:THR500 2.1 20.9 1.0
O2B C:ATP906 2.4 30.4 1.0
OG1 C:THR522 2.5 32.5 1.0
CD C:GLU558 2.7 19.3 1.0
OE1 C:GLU558 2.8 19.3 1.0
CG2 C:THR522 3.0 32.5 1.0
CB C:THR522 3.3 32.5 1.0
PG C:ATP906 3.4 30.4 1.0
CB C:THR500 3.5 20.9 1.0
PB C:ATP906 3.7 30.4 1.0
O1B C:ATP906 4.1 30.4 1.0
O3B C:ATP906 4.1 30.4 1.0
N C:THR522 4.1 32.5 1.0
N C:THR500 4.1 20.9 1.0
CG C:GLU558 4.2 19.3 1.0
CA C:THR500 4.2 20.9 1.0
O3G C:ATP906 4.3 30.4 1.0
O2G C:ATP906 4.3 30.4 1.0
CA C:THR522 4.3 32.5 1.0
O1A C:ATP906 4.4 30.4 1.0
CG2 C:THR500 4.4 20.9 1.0
CB C:LYS499 4.8 17.3 1.0
CE C:LYS499 4.9 17.3 1.0

Reference:

I.Sharon, S.Pinus, M.Grogg, N.Moitessier, D.Hilvert, T.M.Schmeing. A Cryptic Third Active Site in Cyanophycin Synthetase Creates Primers For Polymerization Nat Commun V. 13 3923 2022.
ISSN: ESSN 2041-1723
DOI: 10.1038/S41467-022-31542-7
Page generated: Thu Apr 6 23:33:42 2023

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