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Magnesium in PDB 7txv: Cyanophycin Synthetase 1 From Synechocystis Sp. UTEX2470 E82Q with Atp and 16X(Asp-Arg)

Enzymatic activity of Cyanophycin Synthetase 1 From Synechocystis Sp. UTEX2470 E82Q with Atp and 16X(Asp-Arg)

All present enzymatic activity of Cyanophycin Synthetase 1 From Synechocystis Sp. UTEX2470 E82Q with Atp and 16X(Asp-Arg):
6.3.2.29; 6.3.2.30;

Other elements in 7txv:

The structure of Cyanophycin Synthetase 1 From Synechocystis Sp. UTEX2470 E82Q with Atp and 16X(Asp-Arg) also contains other interesting chemical elements:

Zinc (Zn) 4 atoms

Magnesium Binding Sites:

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 16;

Binding sites:

The binding sites of Magnesium atom in the Cyanophycin Synthetase 1 From Synechocystis Sp. UTEX2470 E82Q with Atp and 16X(Asp-Arg) (pdb code 7txv). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 16 binding sites of Magnesium where determined in the Cyanophycin Synthetase 1 From Synechocystis Sp. UTEX2470 E82Q with Atp and 16X(Asp-Arg), PDB code: 7txv:
Jump to Magnesium binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Magnesium binding site 1 out of 16 in 7txv

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Magnesium binding site 1 out of 16 in the Cyanophycin Synthetase 1 From Synechocystis Sp. UTEX2470 E82Q with Atp and 16X(Asp-Arg)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Cyanophycin Synthetase 1 From Synechocystis Sp. UTEX2470 E82Q with Atp and 16X(Asp-Arg) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg901

b:47.7
occ:1.00
 OE1 A:GLU450 2.9 27.6 1.0
O3B A:ATP906 3.5 63.3 1.0
CD A:GLU450 3.7 27.6 1.0
OE2 A:GLU450 3.7 27.6 1.0
OD1 A:ASN452 3.7 22.7 1.0
O3A A:ATP906 3.9 63.3 1.0
O1G A:ATP906 4.0 63.3 1.0
MG A:MG902 4.2 46.3 1.0
PB A:ATP906 4.2 63.3 1.0
PG A:ATP906 4.3 63.3 1.0
O2B A:ATP906 4.6 63.3 1.0
O3G A:ATP906 4.6 63.3 1.0
CG A:ASN452 4.8 22.7 1.0
CG A:GLU450 4.9 27.6 1.0

Magnesium binding site 2 out of 16 in 7txv

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Magnesium binding site 2 out of 16 in the Cyanophycin Synthetase 1 From Synechocystis Sp. UTEX2470 E82Q with Atp and 16X(Asp-Arg)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Cyanophycin Synthetase 1 From Synechocystis Sp. UTEX2470 E82Q with Atp and 16X(Asp-Arg) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg902

b:46.3
occ:1.00
 OD2 A:ASP431 2.3 23.3 1.0
O1G A:ATP906 2.4 63.3 1.0
CG A:ASP431 3.3 23.3 1.0
O3A A:ATP906 3.6 63.3 1.0
OE1 A:GLU450 3.6 27.6 1.0
OD1 A:ASP431 3.6 23.3 1.0
PG A:ATP906 3.8 63.3 1.0
OD1 A:ASN452 3.9 22.7 1.0
O5' A:ATP906 4.0 63.3 1.0
MG A:MG901 4.2 47.7 1.0
PA A:ATP906 4.2 63.3 1.0
O3B A:ATP906 4.3 63.3 1.0
O1A A:ATP906 4.4 63.3 1.0
O2G A:ATP906 4.5 63.3 1.0
PB A:ATP906 4.5 63.3 1.0
CB A:ASP431 4.5 23.3 1.0
NH2 A:ARG309 4.6 20.1 1.0
ND2 A:ASN452 4.7 22.7 1.0
CG A:ASN452 4.7 22.7 1.0
O3G A:ATP906 4.7 63.3 1.0
CD A:GLU450 4.8 27.6 1.0
NH2 A:ARG323 4.8 35.7 1.0
CB A:GLU450 4.9 27.6 1.0

Magnesium binding site 3 out of 16 in 7txv

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Magnesium binding site 3 out of 16 in the Cyanophycin Synthetase 1 From Synechocystis Sp. UTEX2470 E82Q with Atp and 16X(Asp-Arg)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of Cyanophycin Synthetase 1 From Synechocystis Sp. UTEX2470 E82Q with Atp and 16X(Asp-Arg) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg903

b:49.0
occ:1.00
 O3G A:ATP907 2.5 32.4 1.0
NE2 A:HIS586 3.2 54.1 1.0
CD2 A:HIS586 3.7 54.1 1.0
PG A:ATP907 3.8 32.4 1.0
O A:THR496 4.0 19.4 1.0
O2G A:ATP907 4.1 32.4 1.0
CE1 A:HIS586 4.3 54.1 1.0
O3B A:ATP907 4.4 32.4 1.0
NZ A:LYS499 4.4 20.2 1.0
CG A:HIS586 4.9 54.1 1.0
O1B A:ATP907 4.9 32.4 1.0

Magnesium binding site 4 out of 16 in 7txv

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Magnesium binding site 4 out of 16 in the Cyanophycin Synthetase 1 From Synechocystis Sp. UTEX2470 E82Q with Atp and 16X(Asp-Arg)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 4 of Cyanophycin Synthetase 1 From Synechocystis Sp. UTEX2470 E82Q with Atp and 16X(Asp-Arg) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg904

b:29.4
occ:1.00
 OE2 A:GLU558 1.9 23.9 1.0
O1G A:ATP907 1.9 32.4 1.0
OG1 A:THR500 2.1 22.0 1.0
OG1 A:THR522 2.2 37.8 1.0
O2B A:ATP907 2.3 32.4 1.0
CD A:GLU558 2.8 23.9 1.0
OE1 A:GLU558 2.9 23.9 1.0
CG2 A:THR522 3.0 37.8 1.0
CB A:THR522 3.1 37.8 1.0
PG A:ATP907 3.4 32.4 1.0
CB A:THR500 3.5 22.0 1.0
PB A:ATP907 3.6 32.4 1.0
O1B A:ATP907 3.9 32.4 1.0
O3B A:ATP907 4.0 32.4 1.0
N A:THR522 4.0 37.8 1.0
CA A:THR522 4.2 37.8 1.0
N A:THR500 4.2 22.0 1.0
CA A:THR500 4.3 22.0 1.0
O3G A:ATP907 4.3 32.4 1.0
CG A:GLU558 4.3 23.9 1.0
O2G A:ATP907 4.4 32.4 1.0
O1A A:ATP907 4.4 32.4 1.0
CG2 A:THR500 4.4 22.0 1.0
CB A:LYS499 4.9 20.2 1.0
CE A:LYS499 4.9 20.2 1.0
O3A A:ATP907 4.9 32.4 1.0

Magnesium binding site 5 out of 16 in 7txv

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Magnesium binding site 5 out of 16 in the Cyanophycin Synthetase 1 From Synechocystis Sp. UTEX2470 E82Q with Atp and 16X(Asp-Arg)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 5 of Cyanophycin Synthetase 1 From Synechocystis Sp. UTEX2470 E82Q with Atp and 16X(Asp-Arg) within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mg901

b:55.6
occ:1.00
 OE1 B:GLU450 2.9 28.1 1.0
O3B B:ATP906 3.5 65.3 1.0
CD B:GLU450 3.7 28.1 1.0
OE2 B:GLU450 3.7 28.1 1.0
OD1 B:ASN452 3.7 22.9 1.0
O3A B:ATP906 3.9 65.3 1.0
O1G B:ATP906 4.0 65.3 1.0
MG B:MG902 4.2 49.1 1.0
PB B:ATP906 4.2 65.3 1.0
PG B:ATP906 4.3 65.3 1.0
O2B B:ATP906 4.6 65.3 1.0
O3G B:ATP906 4.6 65.3 1.0
CG B:ASN452 4.8 22.9 1.0
CG B:GLU450 4.9 28.1 1.0

Magnesium binding site 6 out of 16 in 7txv

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Magnesium binding site 6 out of 16 in the Cyanophycin Synthetase 1 From Synechocystis Sp. UTEX2470 E82Q with Atp and 16X(Asp-Arg)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 6 of Cyanophycin Synthetase 1 From Synechocystis Sp. UTEX2470 E82Q with Atp and 16X(Asp-Arg) within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mg902

b:49.1
occ:1.00
 OD2 B:ASP431 2.3 24.8 1.0
O1G B:ATP906 2.4 65.3 1.0
CG B:ASP431 3.3 24.8 1.0
O3A B:ATP906 3.6 65.3 1.0
OE1 B:GLU450 3.6 28.1 1.0
OD1 B:ASP431 3.6 24.8 1.0
PG B:ATP906 3.8 65.3 1.0
OD1 B:ASN452 3.9 22.9 1.0
O5' B:ATP906 4.0 65.3 1.0
MG B:MG901 4.2 55.6 1.0
PA B:ATP906 4.2 65.3 1.0
O3B B:ATP906 4.3 65.3 1.0
O1A B:ATP906 4.4 65.3 1.0
PB B:ATP906 4.5 65.3 1.0
O2G B:ATP906 4.5 65.3 1.0
CB B:ASP431 4.5 24.8 1.0
NH2 B:ARG309 4.6 21.0 1.0
ND2 B:ASN452 4.7 22.9 1.0
CG B:ASN452 4.7 22.9 1.0
O3G B:ATP906 4.7 65.3 1.0
CD B:GLU450 4.8 28.1 1.0
NH2 B:ARG323 4.8 37.5 1.0
CB B:GLU450 4.9 28.1 1.0

Magnesium binding site 7 out of 16 in 7txv

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Magnesium binding site 7 out of 16 in the Cyanophycin Synthetase 1 From Synechocystis Sp. UTEX2470 E82Q with Atp and 16X(Asp-Arg)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 7 of Cyanophycin Synthetase 1 From Synechocystis Sp. UTEX2470 E82Q with Atp and 16X(Asp-Arg) within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mg903

b:58.1
occ:1.00
 O3G B:ATP907 2.5 32.4 1.0
NE2 B:HIS586 3.2 57.6 1.0
CD2 B:HIS586 3.7 57.6 1.0
PG B:ATP907 3.8 32.4 1.0
O B:THR496 4.0 20.6 1.0
O2G B:ATP907 4.1 32.4 1.0
CE1 B:HIS586 4.3 57.6 1.0
O3B B:ATP907 4.4 32.4 1.0
NZ B:LYS499 4.4 20.1 1.0
CG B:HIS586 4.9 57.6 1.0
O1B B:ATP907 4.9 32.4 1.0

Magnesium binding site 8 out of 16 in 7txv

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Magnesium binding site 8 out of 16 in the Cyanophycin Synthetase 1 From Synechocystis Sp. UTEX2470 E82Q with Atp and 16X(Asp-Arg)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 8 of Cyanophycin Synthetase 1 From Synechocystis Sp. UTEX2470 E82Q with Atp and 16X(Asp-Arg) within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mg904

b:29.8
occ:1.00
 OE2 B:GLU558 1.9 24.3 1.0
O1G B:ATP907 1.9 32.4 1.0
OG1 B:THR500 2.1 21.2 1.0
OG1 B:THR522 2.2 37.5 1.0
O2B B:ATP907 2.3 32.4 1.0
CD B:GLU558 2.8 24.3 1.0
OE1 B:GLU558 2.9 24.3 1.0
CG2 B:THR522 3.0 37.5 1.0
CB B:THR522 3.1 37.5 1.0
PG B:ATP907 3.4 32.4 1.0
CB B:THR500 3.5 21.2 1.0
PB B:ATP907 3.6 32.4 1.0
O1B B:ATP907 3.9 32.4 1.0
O3B B:ATP907 4.0 32.4 1.0
N B:THR522 4.0 37.5 1.0
CA B:THR522 4.2 37.5 1.0
N B:THR500 4.2 21.2 1.0
CA B:THR500 4.3 21.2 1.0
O3G B:ATP907 4.3 32.4 1.0
CG B:GLU558 4.3 24.3 1.0
O2G B:ATP907 4.4 32.4 1.0
O1A B:ATP907 4.4 32.4 1.0
CG2 B:THR500 4.4 21.2 1.0
CB B:LYS499 4.9 20.1 1.0
CE B:LYS499 4.9 20.1 1.0
O3A B:ATP907 4.9 32.4 1.0

Magnesium binding site 9 out of 16 in 7txv

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Magnesium binding site 9 out of 16 in the Cyanophycin Synthetase 1 From Synechocystis Sp. UTEX2470 E82Q with Atp and 16X(Asp-Arg)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 9 of Cyanophycin Synthetase 1 From Synechocystis Sp. UTEX2470 E82Q with Atp and 16X(Asp-Arg) within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Mg901

b:55.3
occ:1.00
 OE1 C:GLU450 2.9 28.7 1.0
O3B C:ATP906 3.5 64.8 1.0
CD C:GLU450 3.7 28.7 1.0
OE2 C:GLU450 3.7 28.7 1.0
OD1 C:ASN452 3.7 23.4 1.0
O3A C:ATP906 3.9 64.8 1.0
O1G C:ATP906 4.0 64.8 1.0
MG C:MG902 4.2 48.3 1.0
PB C:ATP906 4.2 64.8 1.0
PG C:ATP906 4.3 64.8 1.0
O2B C:ATP906 4.6 64.8 1.0
O3G C:ATP906 4.6 64.8 1.0
CG C:ASN452 4.8 23.4 1.0
CG C:GLU450 4.9 28.7 1.0

Magnesium binding site 10 out of 16 in 7txv

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Magnesium binding site 10 out of 16 in the Cyanophycin Synthetase 1 From Synechocystis Sp. UTEX2470 E82Q with Atp and 16X(Asp-Arg)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 10 of Cyanophycin Synthetase 1 From Synechocystis Sp. UTEX2470 E82Q with Atp and 16X(Asp-Arg) within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Mg902

b:48.3
occ:1.00
 OD2 C:ASP431 2.3 24.9 1.0
O1G C:ATP906 2.4 64.8 1.0
CG C:ASP431 3.3 24.9 1.0
O3A C:ATP906 3.6 64.8 1.0
OE1 C:GLU450 3.6 28.7 1.0
OD1 C:ASP431 3.6 24.9 1.0
PG C:ATP906 3.8 64.8 1.0
OD1 C:ASN452 3.9 23.4 1.0
O5' C:ATP906 4.0 64.8 1.0
MG C:MG901 4.2 55.3 1.0
PA C:ATP906 4.2 64.8 1.0
O3B C:ATP906 4.3 64.8 1.0
O1A C:ATP906 4.4 64.8 1.0
O2G C:ATP906 4.5 64.8 1.0
PB C:ATP906 4.5 64.8 1.0
CB C:ASP431 4.5 24.9 1.0
NH2 C:ARG309 4.6 21.2 1.0
ND2 C:ASN452 4.7 23.4 1.0
CG C:ASN452 4.7 23.4 1.0
O3G C:ATP906 4.7 64.8 1.0
CD C:GLU450 4.8 28.7 1.0
NH2 C:ARG323 4.8 35.9 1.0
CB C:GLU450 4.9 28.7 1.0

Reference:

I.Sharon, S.Pinus, M.Grogg, N.Moitessier, D.Hilvert, T.M.Schmeing. A Cryptic Third Active Site in Cyanophycin Synthetase Creates Primers For Polymerization Nat Commun V. 13 3923 2022.
ISSN: ESSN 2041-1723
DOI: 10.1038/S41467-022-31542-7
Page generated: Thu Oct 3 09:34:59 2024

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