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Magnesium in PDB 7u66: Structure of E. Coli Dgtpase Bound to T7 Bacteriophage Protein GP1.2 and Dgtp

Enzymatic activity of Structure of E. Coli Dgtpase Bound to T7 Bacteriophage Protein GP1.2 and Dgtp

All present enzymatic activity of Structure of E. Coli Dgtpase Bound to T7 Bacteriophage Protein GP1.2 and Dgtp:
3.1.5.1;

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Structure of E. Coli Dgtpase Bound to T7 Bacteriophage Protein GP1.2 and Dgtp (pdb code 7u66). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 6 binding sites of Magnesium where determined in the Structure of E. Coli Dgtpase Bound to T7 Bacteriophage Protein GP1.2 and Dgtp, PDB code: 7u66:
Jump to Magnesium binding site number: 1; 2; 3; 4; 5; 6;

Magnesium binding site 1 out of 6 in 7u66

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Magnesium binding site 1 out of 6 in the Structure of E. Coli Dgtpase Bound to T7 Bacteriophage Protein GP1.2 and Dgtp


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Structure of E. Coli Dgtpase Bound to T7 Bacteriophage Protein GP1.2 and Dgtp within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg701

b:47.8
occ:1.00
 OD1 A:ASP268 2.1 52.2 1.0
NE2 A:HIS117 2.2 52.2 1.0
NE2 A:HIS69 2.4 52.2 1.0
CE1 A:HIS117 3.0 52.2 1.0
CG A:ASP268 3.3 52.2 1.0
CE1 A:HIS69 3.4 52.2 1.0
CD2 A:HIS69 3.4 52.2 1.0
CD2 A:HIS117 3.4 52.2 1.0
OD2 A:ASP268 3.8 52.2 1.0
ND1 A:HIS117 4.2 52.2 1.0
CG A:HIS117 4.4 52.2 1.0
CB A:ASP268 4.5 52.2 1.0
ND1 A:HIS69 4.5 52.2 1.0
CG A:HIS69 4.5 52.2 1.0
CG2 A:VAL73 4.6 52.2 1.0

Magnesium binding site 2 out of 6 in 7u66

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Magnesium binding site 2 out of 6 in the Structure of E. Coli Dgtpase Bound to T7 Bacteriophage Protein GP1.2 and Dgtp


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Structure of E. Coli Dgtpase Bound to T7 Bacteriophage Protein GP1.2 and Dgtp within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mg701

b:47.8
occ:1.00
 OD1 B:ASP268 2.1 52.2 1.0
NE2 B:HIS117 2.2 52.2 1.0
NE2 B:HIS69 2.4 52.2 1.0
CE1 B:HIS117 3.0 52.2 1.0
CG B:ASP268 3.3 52.2 1.0
CE1 B:HIS69 3.4 52.2 1.0
CD2 B:HIS69 3.4 52.2 1.0
CD2 B:HIS117 3.4 52.2 1.0
OD2 B:ASP268 3.8 52.2 1.0
ND1 B:HIS117 4.2 52.2 1.0
CG B:HIS117 4.4 52.2 1.0
CB B:ASP268 4.5 52.2 1.0
ND1 B:HIS69 4.5 52.2 1.0
CG B:HIS69 4.5 52.2 1.0
CG2 B:VAL73 4.6 52.2 1.0

Magnesium binding site 3 out of 6 in 7u66

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Magnesium binding site 3 out of 6 in the Structure of E. Coli Dgtpase Bound to T7 Bacteriophage Protein GP1.2 and Dgtp


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of Structure of E. Coli Dgtpase Bound to T7 Bacteriophage Protein GP1.2 and Dgtp within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Mg701

b:47.8
occ:1.00
 OD1 C:ASP268 2.1 52.2 1.0
NE2 C:HIS117 2.2 52.2 1.0
NE2 C:HIS69 2.4 52.2 1.0
CE1 C:HIS117 3.0 52.2 1.0
CG C:ASP268 3.3 52.2 1.0
CE1 C:HIS69 3.4 52.2 1.0
CD2 C:HIS69 3.4 52.2 1.0
CD2 C:HIS117 3.4 52.2 1.0
OD2 C:ASP268 3.8 52.2 1.0
ND1 C:HIS117 4.2 52.2 1.0
CG C:HIS117 4.4 52.2 1.0
CB C:ASP268 4.5 52.2 1.0
ND1 C:HIS69 4.5 52.2 1.0
CG C:HIS69 4.5 52.2 1.0
CG2 C:VAL73 4.6 52.2 1.0

Magnesium binding site 4 out of 6 in 7u66

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Magnesium binding site 4 out of 6 in the Structure of E. Coli Dgtpase Bound to T7 Bacteriophage Protein GP1.2 and Dgtp


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 4 of Structure of E. Coli Dgtpase Bound to T7 Bacteriophage Protein GP1.2 and Dgtp within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Mg701

b:47.8
occ:1.00
 OD1 D:ASP268 2.1 52.2 1.0
NE2 D:HIS117 2.2 52.2 1.0
NE2 D:HIS69 2.4 52.2 1.0
CE1 D:HIS117 3.0 52.2 1.0
CG D:ASP268 3.3 52.2 1.0
CE1 D:HIS69 3.4 52.2 1.0
CD2 D:HIS69 3.4 52.2 1.0
CD2 D:HIS117 3.4 52.2 1.0
OD2 D:ASP268 3.8 52.2 1.0
ND1 D:HIS117 4.2 52.2 1.0
CG D:HIS117 4.4 52.2 1.0
CB D:ASP268 4.5 52.2 1.0
ND1 D:HIS69 4.5 52.2 1.0
CG D:HIS69 4.5 52.2 1.0
CG2 D:VAL73 4.6 52.2 1.0

Magnesium binding site 5 out of 6 in 7u66

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Magnesium binding site 5 out of 6 in the Structure of E. Coli Dgtpase Bound to T7 Bacteriophage Protein GP1.2 and Dgtp


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 5 of Structure of E. Coli Dgtpase Bound to T7 Bacteriophage Protein GP1.2 and Dgtp within 5.0Å range:
probe atom residue distance (Å) B Occ
E:Mg701

b:47.8
occ:1.00
 OD1 E:ASP268 2.1 52.2 1.0
NE2 E:HIS117 2.2 52.2 1.0
NE2 E:HIS69 2.4 52.2 1.0
CE1 E:HIS117 3.0 52.2 1.0
CG E:ASP268 3.3 52.2 1.0
CE1 E:HIS69 3.4 52.2 1.0
CD2 E:HIS69 3.4 52.2 1.0
CD2 E:HIS117 3.4 52.2 1.0
OD2 E:ASP268 3.8 52.2 1.0
ND1 E:HIS117 4.2 52.2 1.0
CG E:HIS117 4.4 52.2 1.0
CB E:ASP268 4.5 52.2 1.0
ND1 E:HIS69 4.5 52.2 1.0
CG E:HIS69 4.5 52.2 1.0
CG2 E:VAL73 4.6 52.2 1.0

Magnesium binding site 6 out of 6 in 7u66

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Magnesium binding site 6 out of 6 in the Structure of E. Coli Dgtpase Bound to T7 Bacteriophage Protein GP1.2 and Dgtp


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 6 of Structure of E. Coli Dgtpase Bound to T7 Bacteriophage Protein GP1.2 and Dgtp within 5.0Å range:
probe atom residue distance (Å) B Occ
F:Mg701

b:47.8
occ:1.00
 OD1 F:ASP268 2.1 52.2 1.0
NE2 F:HIS117 2.2 52.2 1.0
NE2 F:HIS69 2.4 52.2 1.0
CE1 F:HIS117 3.0 52.2 1.0
CG F:ASP268 3.3 52.2 1.0
CE1 F:HIS69 3.4 52.2 1.0
CD2 F:HIS69 3.4 52.2 1.0
CD2 F:HIS117 3.4 52.2 1.0
OD2 F:ASP268 3.8 52.2 1.0
ND1 F:HIS117 4.2 52.2 1.0
CG F:HIS117 4.4 52.2 1.0
CB F:ASP268 4.5 52.2 1.0
ND1 F:HIS69 4.5 52.2 1.0
CG F:HIS69 4.5 52.2 1.0
CG2 F:VAL73 4.6 52.2 1.0

Reference:

B.P.Klemm, D.Singh, C.E.Smith, A.L.Hsu, L.B.Dillard, J.M.Krahn, R.E.London, G.A.Mueller, M.J.Borgnia, R.M.Schaaper. Mechanism By Which T7 Bacteriophage Protein GP1.2 Inhibits Escherichia Coli Dgtpase. Proc.Natl.Acad.Sci.Usa V. 119 92119 2022.
ISSN: ESSN 1091-6490
PubMed: 36067314
DOI: 10.1073/PNAS.2123092119
Page generated: Thu Oct 3 09:48:23 2024

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