Magnesium in PDB 7uiv: Clpap Complex Bound to Clps N-Terminal Extension, Class Iia

Enzymatic activity of Clpap Complex Bound to Clps N-Terminal Extension, Class Iia

All present enzymatic activity of Clpap Complex Bound to Clps N-Terminal Extension, Class Iia:
3.4.21.92;

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Clpap Complex Bound to Clps N-Terminal Extension, Class Iia (pdb code 7uiv). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 7 binding sites of Magnesium where determined in the Clpap Complex Bound to Clps N-Terminal Extension, Class Iia, PDB code: 7uiv:
Jump to Magnesium binding site number: 1; 2; 3; 4; 5; 6; 7;

Magnesium binding site 1 out of 7 in 7uiv

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Magnesium binding site 1 out of 7 in the Clpap Complex Bound to Clps N-Terminal Extension, Class Iia


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Clpap Complex Bound to Clps N-Terminal Extension, Class Iia within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg803

b:60.1
occ:1.00
O3G A:AGS802 2.1 81.4 1.0
HG1 A:THR502 2.4 89.2 1.0
OG1 A:THR502 2.8 89.2 1.0
O2B A:AGS802 3.0 81.4 1.0
PG A:AGS802 3.4 81.4 1.0
HH22 B:ARG643 3.5 48.9 1.0
HG1 A:THR604 3.6 90.4 1.0
HG3 A:LYS501 3.6 90.8 1.0
HD2 A:LYS501 3.7 90.8 1.0
O3B A:AGS802 3.7 81.4 1.0
OD1 A:ASP564 3.8 88.1 1.0
HD22 A:ASN606 3.8 90.0 1.0
HB A:THR502 3.9 89.2 1.0
PB A:AGS802 4.0 81.4 1.0
CB A:THR502 4.0 89.2 1.0
OD2 A:ASP564 4.0 88.1 1.0
HG2 A:LYS501 4.1 90.8 1.0
H A:THR502 4.1 89.2 1.0
O2G A:AGS802 4.1 81.4 1.0
HB A:THR604 4.2 90.4 1.0
OG1 A:THR604 4.2 90.4 1.0
CG A:LYS501 4.2 90.8 1.0
NH2 B:ARG643 4.2 48.9 1.0
CG A:ASP564 4.3 88.1 1.0
CD A:LYS501 4.4 90.8 1.0
HH21 B:ARG643 4.4 48.9 1.0
ND2 A:ASN606 4.6 90.0 1.0
HG21 A:THR502 4.6 89.2 1.0
OD1 A:ASN606 4.6 90.0 1.0
HG21 A:THR604 4.7 90.4 1.0
CB A:THR604 4.7 90.4 1.0
N A:THR502 4.7 89.2 1.0
HD3 A:LYS501 4.8 90.8 1.0
O2A A:AGS802 4.8 81.4 1.0
S1G A:AGS802 4.9 81.4 1.0
CG2 A:THR502 4.9 89.2 1.0
CA A:THR502 4.9 89.2 1.0
O1B A:AGS802 5.0 81.4 1.0

Magnesium binding site 2 out of 7 in 7uiv

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Magnesium binding site 2 out of 7 in the Clpap Complex Bound to Clps N-Terminal Extension, Class Iia


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Clpap Complex Bound to Clps N-Terminal Extension, Class Iia within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mg803

b:60.8
occ:1.00
O2B B:AGS801 2.3 62.3 1.0
HG1 B:THR221 2.3 70.4 1.0
OG1 B:THR221 2.3 70.4 1.0
S1G B:AGS801 3.0 62.3 1.0
PB B:AGS801 3.1 62.3 1.0
HG B:SER321 3.2 76.4 1.0
OE2 B:GLU286 3.3 75.8 1.0
O1B B:AGS801 3.3 62.3 1.0
O3B B:AGS801 3.7 62.3 1.0
H B:THR221 3.7 70.4 1.0
CB B:THR221 3.7 70.4 1.0
PG B:AGS801 3.8 62.3 1.0
HB2 B:LYS220 3.8 73.0 1.0
OG B:SER321 3.9 76.4 1.0
O2G B:AGS801 4.0 62.3 1.0
HB B:THR221 4.0 70.4 1.0
HE2 B:LYS220 4.0 73.0 1.0
HB2 B:ASP285 4.1 79.0 1.0
CD B:GLU286 4.1 75.8 1.0
N B:THR221 4.1 70.4 1.0
HH22 C:ARG340 4.4 42.8 1.0
CA B:THR221 4.4 70.4 1.0
HA B:THR221 4.5 70.4 1.0
HG21 B:THR221 4.5 70.4 1.0
O3A B:AGS801 4.6 62.3 1.0
OE1 B:GLU286 4.6 75.8 1.0
HG3 B:GLU286 4.7 75.8 1.0
CG2 B:THR221 4.7 70.4 1.0
CB B:LYS220 4.7 73.0 1.0
HD3 B:LYS220 4.8 73.0 1.0
HZ3 B:LYS220 4.8 73.0 1.0
HB3 B:LYS220 4.9 73.0 1.0
CE B:LYS220 4.9 73.0 1.0
H B:GLU286 4.9 75.8 1.0
HB2 B:SER321 4.9 76.4 1.0
CB B:ASP285 5.0 79.0 1.0

Magnesium binding site 3 out of 7 in 7uiv

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Magnesium binding site 3 out of 7 in the Clpap Complex Bound to Clps N-Terminal Extension, Class Iia


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of Clpap Complex Bound to Clps N-Terminal Extension, Class Iia within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mg804

b:29.4
occ:1.00
O2B B:AGS802 2.0 53.8 1.0
HG1 B:THR502 2.4 29.5 1.0
HG21 B:THR604 2.7 28.7 1.0
OG1 B:THR502 2.7 29.5 1.0
PB B:AGS802 3.0 53.8 1.0
S1G B:AGS802 3.1 53.8 1.0
OD2 B:ASP564 3.1 29.6 1.0
HG22 B:THR604 3.2 28.7 1.0
OD1 B:ASP564 3.3 29.6 1.0
CG2 B:THR604 3.4 28.7 1.0
O1B B:AGS802 3.4 53.8 1.0
HH22 C:ARG643 3.5 53.8 1.0
CG B:ASP564 3.6 29.6 1.0
OE2 B:GLU565 3.7 30.6 1.0
O3B B:AGS802 3.7 53.8 1.0
HD22 B:ASN606 3.7 31.5 1.0
HE3 B:LYS501 3.7 29.3 1.0
PG B:AGS802 3.9 53.8 1.0
CB B:THR502 3.9 29.5 1.0
HB B:THR502 3.9 29.5 1.0
H B:THR502 4.0 29.5 1.0
HB B:THR604 4.1 28.7 1.0
HB2 B:LYS501 4.1 29.3 1.0
HG23 B:THR604 4.1 28.7 1.0
HG1 B:THR604 4.1 28.7 1.0
O2G B:AGS802 4.2 53.8 1.0
CB B:THR604 4.3 28.7 1.0
NH2 C:ARG643 4.3 53.8 1.0
O3A B:AGS802 4.4 53.8 1.0
ND2 B:ASN606 4.5 31.5 1.0
N B:THR502 4.6 29.5 1.0
HH21 C:ARG643 4.6 53.8 1.0
HG21 B:THR502 4.7 29.5 1.0
OG1 B:THR604 4.7 28.7 1.0
CE B:LYS501 4.7 29.3 1.0
HH22 B:ARG702 4.7 53.8 1.0
HZ1 B:LYS501 4.7 29.3 1.0
HH12 C:ARG643 4.7 53.8 1.0
CD B:GLU565 4.8 30.6 1.0
CA B:THR502 4.8 29.5 1.0
CG2 B:THR502 4.9 29.5 1.0
HD21 B:ASN606 5.0 31.5 1.0

Magnesium binding site 4 out of 7 in 7uiv

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Magnesium binding site 4 out of 7 in the Clpap Complex Bound to Clps N-Terminal Extension, Class Iia


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 4 of Clpap Complex Bound to Clps N-Terminal Extension, Class Iia within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Mg803

b:25.9
occ:1.00
OG1 C:THR221 2.0 31.9 1.0
O1B C:AGS801 2.1 29.4 1.0
O3G C:AGS801 2.8 29.4 1.0
PB C:AGS801 2.8 29.4 1.0
O2B C:AGS801 3.1 29.4 1.0
OD2 C:ASP285 3.1 36.4 1.0
OD1 C:ASP285 3.1 36.4 1.0
OE2 C:GLU286 3.2 34.0 1.0
CB C:THR221 3.3 31.9 1.0
HG C:SER321 3.5 32.7 1.0
O3B C:AGS801 3.5 29.4 1.0
HB C:THR221 3.5 31.9 1.0
CG C:ASP285 3.5 36.4 1.0
O2G C:AGS801 3.5 29.4 1.0
PG C:AGS801 3.5 29.4 1.0
HH22 D:ARG340 3.6 27.8 1.0
HG21 C:THR221 3.7 31.9 1.0
H C:THR221 4.0 31.9 1.0
CG2 C:THR221 4.1 31.9 1.0
HE2 C:LYS220 4.1 29.9 1.0
OG C:SER321 4.2 32.7 1.0
NH2 D:ARG340 4.2 27.8 1.0
HH21 D:ARG340 4.2 27.8 1.0
O3A C:AGS801 4.3 29.4 1.0
HB2 C:LYS220 4.3 29.9 1.0
CD C:GLU286 4.3 34.0 1.0
N C:THR221 4.4 31.9 1.0
CA C:THR221 4.4 31.9 1.0
HG23 C:THR221 4.5 31.9 1.0
HA C:THR221 4.6 31.9 1.0
HZ C:PHE283 4.8 36.8 1.0
HB3 C:SER321 4.8 32.7 1.0
HG22 C:THR221 4.8 31.9 1.0
O2A C:AGS801 4.9 29.4 1.0
OE1 C:GLU286 4.9 34.0 1.0
HZ1 C:LYS220 4.9 29.9 1.0
H C:GLU286 4.9 34.0 1.0
CE C:LYS220 5.0 29.9 1.0

Magnesium binding site 5 out of 7 in 7uiv

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Magnesium binding site 5 out of 7 in the Clpap Complex Bound to Clps N-Terminal Extension, Class Iia


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 5 of Clpap Complex Bound to Clps N-Terminal Extension, Class Iia within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Mg804

b:33.1
occ:1.00
OG1 C:THR502 2.0 31.8 1.0
S1G C:AGS802 2.4 53.8 1.0
HB C:THR502 2.9 31.8 1.0
CB C:THR502 3.0 31.8 1.0
O3B C:AGS802 3.5 53.8 1.0
H C:THR502 3.5 31.8 1.0
O2B C:AGS802 3.5 53.8 1.0
PG C:AGS802 3.5 53.8 1.0
O2A C:AGS802 3.6 53.8 1.0
HG1 C:THR604 3.7 30.0 1.0
HG22 C:THR502 3.7 31.8 1.0
OD1 C:ASP564 3.7 29.7 1.0
OE1 C:GLU565 3.9 27.7 1.0
CG2 C:THR502 3.9 31.8 1.0
HH22 D:ARG643 4.0 29.8 1.0
N C:THR502 4.1 31.8 1.0
PB C:AGS802 4.1 53.8 1.0
CA C:THR502 4.1 31.8 1.0
O3G C:AGS802 4.2 53.8 1.0
CG C:ASP564 4.3 29.7 1.0
HH21 D:ARG643 4.3 29.8 1.0
PA C:AGS802 4.4 53.8 1.0
NH2 D:ARG643 4.4 29.8 1.0
HB2 C:LYS501 4.4 29.3 1.0
OG1 C:THR604 4.4 30.0 1.0
HA C:THR502 4.5 31.8 1.0
O1A C:AGS802 4.5 53.8 1.0
HG21 C:THR502 4.5 31.8 1.0
HG21 C:THR604 4.6 30.0 1.0
O3A C:AGS802 4.6 53.8 1.0
HG23 C:THR502 4.6 31.8 1.0
OD2 C:ASP564 4.7 29.7 1.0
HB3 C:ASP564 4.7 29.7 1.0
HB C:THR604 4.7 30.0 1.0
HE2 C:LYS501 4.8 29.3 1.0
O2G C:AGS802 4.8 53.8 1.0

Magnesium binding site 6 out of 7 in 7uiv

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Magnesium binding site 6 out of 7 in the Clpap Complex Bound to Clps N-Terminal Extension, Class Iia


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 6 of Clpap Complex Bound to Clps N-Terminal Extension, Class Iia within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Mg803

b:18.5
occ:1.00
HG23 D:THR221 1.9 31.0 1.0
HG21 D:THR221 2.1 31.0 1.0
CG2 D:THR221 2.3 31.0 1.0
O3B D:AGS801 2.7 29.7 1.0
HG22 D:THR221 2.7 31.0 1.0
PG D:AGS801 3.1 29.7 1.0
O3G D:AGS801 3.1 29.7 1.0
S1G D:AGS801 3.2 29.7 1.0
O2B D:AGS801 3.4 29.7 1.0
HH22 E:ARG340 3.4 33.8 1.0
OD2 D:ASP285 3.5 31.0 1.0
OD1 D:ASP285 3.5 31.0 1.0
PB D:AGS801 3.6 29.7 1.0
CB D:THR221 3.7 31.0 1.0
HG1 D:THR221 3.8 31.0 1.0
OE2 D:GLU286 3.8 30.5 1.0
O1A D:AGS801 3.9 29.7 1.0
H D:THR221 3.9 31.0 1.0
CG D:ASP285 3.9 31.0 1.0
OG1 D:THR221 3.9 31.0 1.0
O3A D:AGS801 4.0 29.7 1.0
NH2 E:ARG340 4.2 33.8 1.0
HB D:THR221 4.3 31.0 1.0
HH21 E:ARG340 4.3 33.8 1.0
HE2 D:LYS220 4.4 27.7 1.0
N D:THR221 4.4 31.0 1.0
HB2 D:LYS220 4.5 27.7 1.0
HB3 D:SER321 4.5 28.7 1.0
O2G D:AGS801 4.6 29.7 1.0
CA D:THR221 4.6 31.0 1.0
PA D:AGS801 4.6 29.7 1.0
HA D:THR221 4.8 31.0 1.0
O1B D:AGS801 4.9 29.7 1.0
CD D:GLU286 5.0 30.5 1.0

Magnesium binding site 7 out of 7 in 7uiv

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Magnesium binding site 7 out of 7 in the Clpap Complex Bound to Clps N-Terminal Extension, Class Iia


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 7 of Clpap Complex Bound to Clps N-Terminal Extension, Class Iia within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Mg804

b:23.2
occ:1.00
HG1 D:THR502 1.7 32.3 1.0
OG1 D:THR502 2.0 32.3 1.0
O1B D:ADP802 2.0 36.1 1.0
HB D:THR502 3.0 32.3 1.0
O1A D:ADP802 3.0 36.1 1.0
CB D:THR502 3.1 32.3 1.0
PB D:ADP802 3.1 36.1 1.0
O2B D:ADP802 3.3 36.1 1.0
HG21 D:THR502 3.6 32.3 1.0
PA D:ADP802 3.6 36.1 1.0
O3A D:ADP802 3.6 36.1 1.0
HH22 E:ARG643 3.6 47.1 1.0
HG3 D:LYS501 3.7 32.4 1.0
H D:THR502 3.8 32.3 1.0
HG1 D:THR604 3.8 31.6 1.0
O2A D:ADP802 3.8 36.1 1.0
CG2 D:THR502 3.9 32.3 1.0
OD2 D:ASP564 4.1 32.2 1.0
OE2 D:GLU565 4.2 34.3 1.0
CA D:THR502 4.2 32.3 1.0
HG2 D:LYS501 4.3 32.4 1.0
N D:THR502 4.3 32.3 1.0
HD2 D:LYS501 4.3 32.4 1.0
NH2 E:ARG643 4.4 47.1 1.0
CG D:LYS501 4.4 32.4 1.0
O3B D:ADP802 4.4 36.1 1.0
HH21 D:ARG702 4.4 46.2 1.0
HH21 E:ARG643 4.5 47.1 1.0
HG22 D:THR502 4.5 32.3 1.0
OG1 D:THR604 4.5 31.6 1.0
HG23 D:THR502 4.5 32.3 1.0
HA D:THR502 4.5 32.3 1.0
OD2 E:ASP582 4.6 47.7 1.0
CG D:ASP564 4.6 32.2 1.0
HB D:THR604 4.7 31.6 1.0
HZ3 D:LYS501 4.8 32.4 1.0
HZ1 D:LYS501 4.8 32.4 1.0
HG21 D:THR604 4.8 31.6 1.0
HB3 D:ASP564 4.8 32.2 1.0
CD D:LYS501 4.9 32.4 1.0
OD1 D:ASP564 4.9 32.2 1.0

Reference:

S.Kim, X.Fei, R.T.Sauer, T.A.Baker. Aaa+ Protease-Adaptor Structures Reveal Altered Conformations and Ring Specialization. Nat.Struct.Mol.Biol. V. 29 1068 2022.
ISSN: ESSN 1545-9985
PubMed: 36329286
DOI: 10.1038/S41594-022-00850-3
Page generated: Thu Apr 6 23:47:33 2023

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