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Magnesium in PDB 7uiw: Clpap Complex Bound to Clps N-Terminal Extension, Class Iib

Enzymatic activity of Clpap Complex Bound to Clps N-Terminal Extension, Class Iib

All present enzymatic activity of Clpap Complex Bound to Clps N-Terminal Extension, Class Iib:
3.4.21.92;

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Clpap Complex Bound to Clps N-Terminal Extension, Class Iib (pdb code 7uiw). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 7 binding sites of Magnesium where determined in the Clpap Complex Bound to Clps N-Terminal Extension, Class Iib, PDB code: 7uiw:
Jump to Magnesium binding site number: 1; 2; 3; 4; 5; 6; 7;

Magnesium binding site 1 out of 7 in 7uiw

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Magnesium binding site 1 out of 7 in the Clpap Complex Bound to Clps N-Terminal Extension, Class Iib


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Clpap Complex Bound to Clps N-Terminal Extension, Class Iib within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg803

b:31.0
occ:1.00
 HG1 A:THR502 1.8 41.1 1.0
OG1 A:THR502 2.3 41.1 1.0
O2B A:AGS802 2.3 36.6 1.0
O2G A:AGS802 2.5 36.6 1.0
HB A:THR502 3.1 41.1 1.0
CB A:THR502 3.3 41.1 1.0
O3B A:AGS802 3.4 36.6 1.0
PB A:AGS802 3.4 36.6 1.0
OD2 A:ASP564 3.4 40.8 1.0
HG3 A:LYS501 3.6 39.7 1.0
O2A A:AGS802 3.6 36.6 1.0
PG A:AGS802 3.6 36.6 1.0
HH22 B:ARG643 3.7 28.9 1.0
H A:THR502 3.8 41.1 1.0
HG1 A:THR604 3.8 43.9 1.0
OD1 A:ASP564 3.8 40.8 1.0
HG21 A:THR502 3.8 41.1 1.0
CG A:ASP564 4.0 40.8 1.0
HD2 A:LYS501 4.1 39.7 1.0
CG2 A:THR502 4.2 41.1 1.0
O3A A:AGS802 4.2 36.6 1.0
CG A:LYS501 4.3 39.7 1.0
HG2 A:LYS501 4.3 39.7 1.0
PA A:AGS802 4.3 36.6 1.0
N A:THR502 4.4 41.1 1.0
CA A:THR502 4.4 41.1 1.0
HH12 B:ARG643 4.5 28.9 1.0
O3G A:AGS802 4.5 36.6 1.0
HH21 A:ARG702 4.5 31.2 1.0
NH2 B:ARG643 4.5 28.9 1.0
OE2 A:GLU565 4.6 41.8 1.0
HG21 A:THR604 4.6 43.9 1.0
OG1 A:THR604 4.6 43.9 1.0
O1B A:AGS802 4.7 36.6 1.0
CD A:LYS501 4.7 39.7 1.0
HG22 A:THR502 4.7 41.1 1.0
O1A A:AGS802 4.8 36.6 1.0
HA A:THR502 4.8 41.1 1.0
HB A:THR604 4.8 43.9 1.0
HG23 A:THR502 4.8 41.1 1.0
HH21 B:ARG643 5.0 28.9 1.0
OD2 B:ASP582 5.0 32.1 1.0

Magnesium binding site 2 out of 7 in 7uiw

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Magnesium binding site 2 out of 7 in the Clpap Complex Bound to Clps N-Terminal Extension, Class Iib


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Clpap Complex Bound to Clps N-Terminal Extension, Class Iib within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mg803

b:26.5
occ:1.00
 O2B B:AGS801 2.0 37.2 1.0
O2G B:AGS801 2.3 37.2 1.0
PG B:AGS801 2.4 37.2 1.0
PB B:AGS801 2.5 37.2 1.0
S1G B:AGS801 2.5 37.2 1.0
O3A B:AGS801 2.5 37.2 1.0
O3B B:AGS801 2.6 37.2 1.0
HG1 B:THR221 2.9 41.9 1.0
HH22 C:ARG340 3.1 30.4 1.0
OG1 B:THR221 3.2 41.9 1.0
O2A B:AGS801 3.3 37.2 1.0
PA B:AGS801 3.5 37.2 1.0
HH21 C:ARG339 3.5 32.0 1.0
HB B:THR221 3.7 41.9 1.0
NH2 C:ARG340 3.9 30.4 1.0
O3G B:AGS801 3.9 37.2 1.0
O1B B:AGS801 3.9 37.2 1.0
CB B:THR221 4.0 41.9 1.0
NH2 C:ARG339 4.1 32.0 1.0
HH21 C:ARG340 4.2 30.4 1.0
HH12 C:ARG340 4.3 30.4 1.0
HH22 C:ARG339 4.4 32.0 1.0
H B:THR221 4.4 41.9 1.0
HE C:ARG339 4.5 32.0 1.0
HG21 B:THR221 4.5 41.9 1.0
O1A B:AGS801 4.5 37.2 1.0
H B:GLY217 4.5 35.5 1.0
O5' B:AGS801 4.6 37.2 1.0
HG C:SER312 4.6 29.2 1.0
HG2 B:LYS220 4.6 41.8 1.0
HG3 B:LYS220 4.7 41.8 1.0
HZ1 B:LYS220 4.8 41.8 1.0
CZ C:ARG340 4.8 30.4 1.0
CG2 B:THR221 4.9 41.9 1.0
NH1 C:ARG340 4.9 30.4 1.0
CZ C:ARG339 4.9 32.0 1.0

Magnesium binding site 3 out of 7 in 7uiw

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Magnesium binding site 3 out of 7 in the Clpap Complex Bound to Clps N-Terminal Extension, Class Iib


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of Clpap Complex Bound to Clps N-Terminal Extension, Class Iib within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mg804

b:23.7
occ:1.00
 O2B B:AGS802 2.0 49.0 1.0
HG1 B:THR502 2.4 23.7 1.0
S1G B:AGS802 2.5 49.0 1.0
OD1 B:ASP564 2.9 27.3 1.0
OG1 B:THR502 3.0 23.7 1.0
OD2 B:ASP564 3.0 27.3 1.0
HG1 B:THR604 3.1 23.2 1.0
HH22 C:ARG643 3.1 49.0 1.0
OE2 B:GLU565 3.2 27.7 1.0
PB B:AGS802 3.2 49.0 1.0
CG B:ASP564 3.3 27.3 1.0
O3B B:AGS802 3.6 49.0 1.0
PG B:AGS802 3.7 49.0 1.0
HB B:THR502 3.8 23.7 1.0
OG1 B:THR604 3.8 23.2 1.0
HD22 B:ASN606 3.9 24.9 1.0
NH2 C:ARG643 3.9 49.0 1.0
CB B:THR502 4.0 23.7 1.0
O1B B:AGS802 4.1 49.0 1.0
HH21 C:ARG643 4.2 49.0 1.0
HB B:THR604 4.2 23.2 1.0
CD B:GLU565 4.3 27.7 1.0
HG21 B:THR502 4.4 23.7 1.0
O3A B:AGS802 4.4 49.0 1.0
HH12 C:ARG643 4.5 49.0 1.0
O2G B:AGS802 4.5 49.0 1.0
HG21 B:THR604 4.5 23.2 1.0
HH21 B:ARG702 4.5 49.0 1.0
CB B:THR604 4.6 23.2 1.0
H B:THR502 4.6 23.7 1.0
HE3 B:LYS501 4.7 24.4 1.0
ND2 B:ASN606 4.7 24.9 1.0
CB B:ASP564 4.8 27.3 1.0
CG2 B:THR502 4.8 23.7 1.0
OE1 B:GLU565 4.8 27.7 1.0
H B:GLU565 4.9 27.7 1.0
O3G B:AGS802 4.9 49.0 1.0
HB2 B:ASP564 4.9 27.3 1.0
CZ C:ARG643 5.0 49.0 1.0
HB2 B:LYS501 5.0 24.4 1.0

Magnesium binding site 4 out of 7 in 7uiw

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Magnesium binding site 4 out of 7 in the Clpap Complex Bound to Clps N-Terminal Extension, Class Iib


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 4 of Clpap Complex Bound to Clps N-Terminal Extension, Class Iib within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Mg803

b:20.2
occ:1.00
 HG21 C:THR502 1.9 20.8 1.0
HG23 C:THR502 2.2 20.8 1.0
HG1 C:THR502 2.4 20.8 1.0
CG2 C:THR502 2.4 20.8 1.0
O2B C:AGS802 2.8 19.2 1.0
OG1 C:THR502 2.9 20.8 1.0
CB C:THR502 3.2 20.8 1.0
HG22 C:THR502 3.3 20.8 1.0
O3G C:AGS802 3.5 19.2 1.0
HB C:THR502 3.7 20.8 1.0
O2A C:AGS802 3.7 19.2 1.0
O2G C:AGS802 3.7 19.2 1.0
PB C:AGS802 4.0 19.2 1.0
O3A C:AGS802 4.0 19.2 1.0
HG1 C:THR604 4.0 23.1 1.0
HH22 C:ARG702 4.0 21.5 1.0
OD1 C:ASP564 4.1 26.7 1.0
HH21 C:ARG518 4.2 25.4 1.0
PG C:AGS802 4.2 19.2 1.0
HH22 C:ARG518 4.2 25.4 1.0
H C:THR502 4.2 20.8 1.0
CG C:ASP564 4.3 26.7 1.0
HB3 C:ASP564 4.3 26.7 1.0
OD2 D:ASP582 4.4 24.0 1.0
OE2 C:GLU565 4.4 24.6 1.0
HH22 D:ARG643 4.4 23.9 1.0
NH2 C:ARG518 4.4 25.4 1.0
O3B C:AGS802 4.5 19.2 1.0
CA C:THR502 4.5 20.8 1.0
OD2 C:ASP564 4.5 26.7 1.0
PA C:AGS802 4.5 19.2 1.0
N C:THR502 4.6 20.8 1.0
NH2 C:ARG702 4.7 21.5 1.0
OG1 C:THR604 4.8 23.1 1.0
HH21 C:ARG702 4.8 21.5 1.0
HH12 D:ARG643 4.8 23.9 1.0
HB2 C:LYS501 4.9 21.7 1.0
CB C:ASP564 4.9 26.7 1.0
HA C:THR502 5.0 20.8 1.0

Magnesium binding site 5 out of 7 in 7uiw

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Magnesium binding site 5 out of 7 in the Clpap Complex Bound to Clps N-Terminal Extension, Class Iib


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 5 of Clpap Complex Bound to Clps N-Terminal Extension, Class Iib within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Mg804

b:17.5
occ:1.00
 OG1 C:THR221 2.0 23.5 1.0
O2B C:AGS801 2.1 22.9 1.0
HG1 C:THR221 2.3 23.5 1.0
O3G C:AGS801 2.6 22.9 1.0
PB C:AGS801 3.1 22.9 1.0
HH22 D:ARG340 3.1 23.0 1.0
OD2 C:ASP285 3.1 25.1 1.0
CB C:THR221 3.2 23.5 1.0
HB C:THR221 3.4 23.5 1.0
HG21 C:THR221 3.4 23.5 1.0
O3B C:AGS801 3.5 22.9 1.0
PG C:AGS801 3.6 22.9 1.0
O1B C:AGS801 3.7 22.9 1.0
NH2 D:ARG340 3.8 23.0 1.0
HH21 D:ARG340 3.8 23.0 1.0
CG2 C:THR221 3.9 23.5 1.0
CG C:ASP285 3.9 25.1 1.0
H C:THR221 4.0 23.5 1.0
OD1 C:ASP285 4.0 25.1 1.0
HG23 C:THR221 4.3 23.5 1.0
HG C:SER321 4.3 20.6 1.0
OE2 C:GLU286 4.3 26.1 1.0
HH21 D:ARG339 4.3 22.1 1.0
S1G C:AGS801 4.4 22.9 1.0
CA C:THR221 4.4 23.5 1.0
O3A C:AGS801 4.5 22.9 1.0
N C:THR221 4.5 23.5 1.0
HH22 D:ARG339 4.5 22.1 1.0
HG22 C:THR221 4.7 23.5 1.0
HA C:THR221 4.7 23.5 1.0
NH2 D:ARG339 4.7 22.1 1.0
O2G C:AGS801 4.9 22.9 1.0
HG D:SER312 4.9 26.5 1.0
HH12 D:ARG340 4.9 23.0 1.0
CZ D:ARG340 5.0 23.0 1.0
O1A C:AGS801 5.0 22.9 1.0
HB2 C:LYS220 5.0 21.2 1.0

Magnesium binding site 6 out of 7 in 7uiw

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Magnesium binding site 6 out of 7 in the Clpap Complex Bound to Clps N-Terminal Extension, Class Iib


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 6 of Clpap Complex Bound to Clps N-Terminal Extension, Class Iib within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Mg803

b:22.9
occ:1.00
 HG23 D:THR221 1.9 22.6 1.0
HG21 D:THR221 2.0 22.6 1.0
O2B D:AGS801 2.0 24.1 1.0
CG2 D:THR221 2.3 22.6 1.0
HG22 D:THR221 2.7 22.6 1.0
PB D:AGS801 3.0 24.1 1.0
O3G D:AGS801 3.1 24.1 1.0
O1B D:AGS801 3.3 24.1 1.0
HH22 E:ARG340 3.4 32.5 1.0
OE2 D:GLU286 3.5 25.0 1.0
CB D:THR221 3.7 22.6 1.0
HG1 D:THR221 3.7 22.6 1.0
O3B D:AGS801 3.7 24.1 1.0
PG D:AGS801 3.8 24.1 1.0
OG1 D:THR221 3.9 22.6 1.0
H D:THR221 3.9 22.6 1.0
S1G D:AGS801 4.1 24.1 1.0
HG D:SER321 4.1 29.0 1.0
NH2 E:ARG340 4.2 32.5 1.0
HB D:THR221 4.2 22.6 1.0
O3A D:AGS801 4.4 24.1 1.0
HH21 E:ARG339 4.4 30.2 1.0
HH21 E:ARG340 4.4 32.5 1.0
HB2 D:ASP285 4.5 26.2 1.0
HB2 D:LYS220 4.5 22.9 1.0
N D:THR221 4.5 22.6 1.0
HE2 D:LYS220 4.5 22.9 1.0
CD D:GLU286 4.5 25.0 1.0
CA D:THR221 4.6 22.6 1.0
HH12 E:ARG340 4.7 32.5 1.0
OG D:SER321 4.7 29.0 1.0
HH22 E:ARG339 4.8 30.2 1.0
OE1 D:GLU286 4.8 25.0 1.0
HA D:THR221 4.9 22.6 1.0
NH2 E:ARG339 4.9 30.2 1.0
HG E:SER312 4.9 36.2 1.0

Magnesium binding site 7 out of 7 in 7uiw

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Magnesium binding site 7 out of 7 in the Clpap Complex Bound to Clps N-Terminal Extension, Class Iib


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 7 of Clpap Complex Bound to Clps N-Terminal Extension, Class Iib within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Mg804

b:25.9
occ:1.00
 O3G D:AGS802 2.0 31.4 1.0
O2G D:AGS802 2.5 31.4 1.0
PG D:AGS802 2.6 31.4 1.0
HG21 D:THR502 2.6 27.3 1.0
HG23 D:THR502 2.7 27.3 1.0
O3B D:AGS802 2.9 31.4 1.0
OD2 E:ASP582 3.0 35.0 1.0
CG2 D:THR502 3.1 27.3 1.0
HG1 D:THR502 3.2 27.3 1.0
HH22 D:ARG702 3.3 37.3 1.0
HH22 E:ARG643 3.5 38.4 1.0
OG1 D:THR502 3.6 27.3 1.0
O2B D:AGS802 3.7 31.4 1.0
HH21 E:ARG643 3.7 38.4 1.0
HG22 D:THR502 3.9 27.3 1.0
O2A D:AGS802 3.9 31.4 1.0
NH2 E:ARG643 3.9 38.4 1.0
PB D:AGS802 3.9 31.4 1.0
CB D:THR502 4.0 27.3 1.0
NH2 D:ARG702 4.0 37.3 1.0
HH22 D:ARG518 4.1 25.9 1.0
HH21 D:ARG518 4.2 25.9 1.0
CG E:ASP582 4.2 35.0 1.0
HH21 D:ARG702 4.3 37.3 1.0
HG1 D:THR604 4.3 28.6 1.0
OE2 D:GLU565 4.4 28.5 1.0
HB3 D:ASP564 4.4 27.8 1.0
NH2 D:ARG518 4.4 25.9 1.0
HB D:THR502 4.4 27.3 1.0
HH12 D:ARG702 4.5 37.3 1.0
PA D:AGS802 4.5 31.4 1.0
S1G D:AGS802 4.5 31.4 1.0
O1A D:AGS802 4.5 31.4 1.0
O3A D:AGS802 4.6 31.4 1.0
H D:THR502 4.6 27.3 1.0
CG D:ASP564 4.7 27.8 1.0
OD1 D:ASP564 4.8 27.8 1.0
OD2 D:ASP564 4.9 27.8 1.0
CZ D:ARG702 4.9 37.3 1.0

Reference:

S.Kim, X.Fei, R.T.Sauer, T.A.Baker. Aaa+ Protease-Adaptor Structures Reveal Altered Conformations and Ring Specialization. Nat.Struct.Mol.Biol. V. 29 1068 2022.
ISSN: ESSN 1545-9985
PubMed: 36329286
DOI: 10.1038/S41594-022-00850-3
Page generated: Thu Oct 3 10:01:00 2024

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