Magnesium in PDB 7uj0: Clpap Complex Bound to Clps N-Terminal Extension, Class Iiib
Enzymatic activity of Clpap Complex Bound to Clps N-Terminal Extension, Class Iiib
All present enzymatic activity of Clpap Complex Bound to Clps N-Terminal Extension, Class Iiib:
3.4.21.92;
Magnesium Binding Sites:
The binding sites of Magnesium atom in the Clpap Complex Bound to Clps N-Terminal Extension, Class Iiib
(pdb code 7uj0). This binding sites where shown within
5.0 Angstroms radius around Magnesium atom.
In total 9 binding sites of Magnesium where determined in the
Clpap Complex Bound to Clps N-Terminal Extension, Class Iiib, PDB code: 7uj0:
Jump to Magnesium binding site number:
1;
2;
3;
4;
5;
6;
7;
8;
9;
Magnesium binding site 1 out
of 9 in 7uj0
Go back to
Magnesium Binding Sites List in 7uj0
Magnesium binding site 1 out
of 9 in the Clpap Complex Bound to Clps N-Terminal Extension, Class Iiib
 Mono view
 Stereo pair view
|
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 1 of Clpap Complex Bound to Clps N-Terminal Extension, Class Iiib within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Mg803
b:130.5
occ:1.00
|
HG1
|
A:THR221
|
2.0
|
138.6
|
1.0
|
|
O3B
|
A:AGS801
|
2.4
|
135.5
|
1.0
|
|
S1G
|
A:AGS801
|
2.5
|
135.5
|
1.0
|
|
O3A
|
A:AGS801
|
2.6
|
135.5
|
1.0
|
|
OG1
|
A:THR221
|
2.6
|
138.6
|
1.0
|
|
OD2
|
A:ASP285
|
2.6
|
140.0
|
1.0
|
|
PG
|
A:AGS801
|
2.8
|
135.5
|
1.0
|
|
PB
|
A:AGS801
|
3.0
|
135.5
|
1.0
|
|
O2G
|
A:AGS801
|
3.4
|
135.5
|
1.0
|
|
O2B
|
A:AGS801
|
3.4
|
135.5
|
1.0
|
|
HH21
|
B:ARG339
|
3.5
|
117.5
|
1.0
|
|
HB
|
A:THR221
|
3.6
|
138.6
|
1.0
|
|
CG
|
A:ASP285
|
3.6
|
140.0
|
1.0
|
|
CB
|
A:THR221
|
3.7
|
138.6
|
1.0
|
|
PA
|
A:AGS801
|
3.9
|
135.5
|
1.0
|
|
OD1
|
A:ASP285
|
3.9
|
140.0
|
1.0
|
|
O2A
|
A:AGS801
|
4.0
|
135.5
|
1.0
|
|
H
|
A:THR221
|
4.1
|
138.6
|
1.0
|
|
HE
|
B:ARG339
|
4.1
|
117.5
|
1.0
|
|
HG21
|
A:THR221
|
4.1
|
138.6
|
1.0
|
|
O3G
|
A:AGS801
|
4.2
|
135.5
|
1.0
|
|
NH2
|
B:ARG339
|
4.3
|
117.5
|
1.0
|
|
O1B
|
A:AGS801
|
4.3
|
135.5
|
1.0
|
|
CG2
|
A:THR221
|
4.5
|
138.6
|
1.0
|
|
O1A
|
A:AGS801
|
4.6
|
135.5
|
1.0
|
|
N
|
A:THR221
|
4.7
|
138.6
|
1.0
|
|
HH22
|
B:ARG339
|
4.8
|
117.5
|
1.0
|
|
CA
|
A:THR221
|
4.8
|
138.6
|
1.0
|
|
NE
|
B:ARG339
|
4.8
|
117.5
|
1.0
|
|
HG
|
A:SER321
|
4.9
|
139.0
|
1.0
|
|
CB
|
A:ASP285
|
4.9
|
140.0
|
1.0
|
|
HB2
|
A:LYS220
|
4.9
|
138.4
|
1.0
|
|
O5'
|
A:AGS801
|
4.9
|
135.5
|
1.0
|
|
Magnesium binding site 2 out
of 9 in 7uj0
Go back to
Magnesium Binding Sites List in 7uj0
Magnesium binding site 2 out
of 9 in the Clpap Complex Bound to Clps N-Terminal Extension, Class Iiib
 Mono view
 Stereo pair view
|
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 2 of Clpap Complex Bound to Clps N-Terminal Extension, Class Iiib within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Mg804
b:127.1
occ:1.00
|
HA2
|
A:GLY498
|
2.4
|
136.4
|
1.0
|
|
H
|
A:GLY498
|
2.9
|
136.4
|
1.0
|
|
O1B
|
A:ADP802
|
3.1
|
131.5
|
1.0
|
|
CA
|
A:GLY498
|
3.3
|
136.4
|
1.0
|
|
H5'1
|
A:ADP802
|
3.4
|
131.5
|
1.0
|
|
N
|
A:GLY498
|
3.4
|
136.4
|
1.0
|
|
OG1
|
A:THR502
|
3.6
|
154.9
|
1.0
|
|
H5'2
|
A:ADP802
|
3.6
|
131.5
|
1.0
|
|
O3A
|
A:ADP802
|
3.7
|
131.5
|
1.0
|
|
PB
|
A:ADP802
|
3.8
|
131.5
|
1.0
|
|
OE2
|
A:GLU503
|
3.8
|
153.4
|
1.0
|
|
H
|
A:VAL499
|
3.9
|
149.1
|
1.0
|
|
HA3
|
A:GLY498
|
3.9
|
136.4
|
1.0
|
|
O1A
|
A:ADP802
|
3.9
|
131.5
|
1.0
|
|
H
|
A:GLY500
|
3.9
|
152.0
|
1.0
|
|
H
|
A:THR502
|
3.9
|
154.9
|
1.0
|
|
HG1
|
A:THR502
|
3.9
|
154.9
|
1.0
|
|
C5'
|
A:ADP802
|
4.0
|
131.5
|
1.0
|
|
O2B
|
A:ADP802
|
4.0
|
131.5
|
1.0
|
|
C
|
A:GLY498
|
4.1
|
136.4
|
1.0
|
|
HG23
|
A:THR502
|
4.2
|
154.9
|
1.0
|
|
OE1
|
A:GLU503
|
4.2
|
153.4
|
1.0
|
|
N
|
A:VAL499
|
4.2
|
149.1
|
1.0
|
|
H
|
A:LYS501
|
4.4
|
154.5
|
1.0
|
|
PA
|
A:ADP802
|
4.4
|
131.5
|
1.0
|
|
CD
|
A:GLU503
|
4.4
|
153.4
|
1.0
|
|
HB2
|
A:LYS501
|
4.6
|
154.5
|
1.0
|
|
N
|
A:GLY500
|
4.7
|
152.0
|
1.0
|
|
C
|
A:THR497
|
4.7
|
135.0
|
1.0
|
|
CB
|
A:THR502
|
4.7
|
154.9
|
1.0
|
|
O5'
|
A:ADP802
|
4.7
|
131.5
|
1.0
|
|
CG2
|
A:THR502
|
4.7
|
154.9
|
1.0
|
|
HG21
|
A:THR502
|
4.7
|
154.9
|
1.0
|
|
N
|
A:THR502
|
4.8
|
154.9
|
1.0
|
|
HA
|
A:THR497
|
4.9
|
135.0
|
1.0
|
|
N
|
A:LYS501
|
4.9
|
154.5
|
1.0
|
|
Magnesium binding site 3 out
of 9 in 7uj0
Go back to
Magnesium Binding Sites List in 7uj0
Magnesium binding site 3 out
of 9 in the Clpap Complex Bound to Clps N-Terminal Extension, Class Iiib
 Mono view
 Stereo pair view
|
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 3 of Clpap Complex Bound to Clps N-Terminal Extension, Class Iiib within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Mg803
b:90.5
occ:1.00
|
HG1
|
B:THR221
|
1.7
|
91.4
|
1.0
|
|
O2B
|
B:AGS801
|
2.0
|
83.6
|
1.0
|
|
OG1
|
B:THR221
|
2.4
|
91.4
|
1.0
|
|
HG21
|
B:THR221
|
2.8
|
91.4
|
1.0
|
|
PB
|
B:AGS801
|
3.2
|
83.6
|
1.0
|
|
HH22
|
C:ARG340
|
3.3
|
66.8
|
1.0
|
|
CB
|
B:THR221
|
3.4
|
91.4
|
1.0
|
|
CG2
|
B:THR221
|
3.5
|
91.4
|
1.0
|
|
O1B
|
B:AGS801
|
3.5
|
83.6
|
1.0
|
|
HB
|
B:THR221
|
3.6
|
91.4
|
1.0
|
|
HH21
|
C:ARG340
|
3.6
|
66.8
|
1.0
|
|
NH2
|
C:ARG340
|
3.8
|
66.8
|
1.0
|
|
HG23
|
B:THR221
|
3.9
|
91.4
|
1.0
|
|
O3G
|
B:AGS801
|
3.9
|
83.6
|
1.0
|
|
HB2
|
B:ASP285
|
4.0
|
99.2
|
1.0
|
|
OD2
|
B:ASP285
|
4.1
|
99.2
|
1.0
|
|
HG22
|
B:THR221
|
4.2
|
91.4
|
1.0
|
|
O3B
|
B:AGS801
|
4.2
|
83.6
|
1.0
|
|
O3A
|
B:AGS801
|
4.3
|
83.6
|
1.0
|
|
HB3
|
B:ASP285
|
4.6
|
99.2
|
1.0
|
|
HG
|
B:SER321
|
4.6
|
97.5
|
1.0
|
|
CB
|
B:ASP285
|
4.6
|
99.2
|
1.0
|
|
O2A
|
B:AGS801
|
4.6
|
83.6
|
1.0
|
|
PG
|
B:AGS801
|
4.7
|
83.6
|
1.0
|
|
CA
|
B:THR221
|
4.7
|
91.4
|
1.0
|
|
H
|
B:THR221
|
4.8
|
91.4
|
1.0
|
|
CG
|
B:ASP285
|
4.9
|
99.2
|
1.0
|
|
HA
|
B:THR221
|
4.9
|
91.4
|
1.0
|
|
PA
|
B:AGS801
|
4.9
|
83.6
|
1.0
|
|
HH21
|
C:ARG339
|
5.0
|
71.5
|
1.0
|
|
Magnesium binding site 4 out
of 9 in 7uj0
Go back to
Magnesium Binding Sites List in 7uj0
Magnesium binding site 4 out
of 9 in the Clpap Complex Bound to Clps N-Terminal Extension, Class Iiib
 Mono view
 Stereo pair view
|
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 4 of Clpap Complex Bound to Clps N-Terminal Extension, Class Iiib within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Mg804
b:40.2
occ:1.00
|
O2B
|
B:AGS802
|
2.0
|
44.4
|
1.0
|
|
OG1
|
B:THR502
|
2.1
|
45.9
|
1.0
|
|
OD1
|
B:ASP564
|
2.7
|
48.2
|
1.0
|
|
HB
|
B:THR502
|
3.0
|
45.9
|
1.0
|
|
OD2
|
B:ASP564
|
3.0
|
48.2
|
1.0
|
|
CB
|
B:THR502
|
3.0
|
45.9
|
1.0
|
|
CG
|
B:ASP564
|
3.2
|
48.2
|
1.0
|
|
HG21
|
B:THR502
|
3.3
|
45.9
|
1.0
|
|
HG1
|
B:THR604
|
3.4
|
47.9
|
1.0
|
|
PB
|
B:AGS802
|
3.5
|
44.4
|
1.0
|
|
CG2
|
B:THR502
|
3.7
|
45.9
|
1.0
|
|
HH22
|
C:ARG643
|
3.8
|
41.2
|
1.0
|
|
S1G
|
B:AGS802
|
3.8
|
44.4
|
1.0
|
|
O2A
|
B:AGS802
|
3.8
|
44.4
|
1.0
|
|
OD2
|
C:ASP582
|
4.1
|
44.1
|
1.0
|
|
H
|
B:THR502
|
4.2
|
45.9
|
1.0
|
|
O3G
|
B:AGS802
|
4.2
|
44.4
|
1.0
|
|
OG1
|
B:THR604
|
4.2
|
47.9
|
1.0
|
|
HG22
|
B:THR502
|
4.3
|
45.9
|
1.0
|
|
O3A
|
B:AGS802
|
4.3
|
44.4
|
1.0
|
|
HH21
|
C:ARG643
|
4.3
|
41.2
|
1.0
|
|
CA
|
B:THR502
|
4.3
|
45.9
|
1.0
|
|
O1B
|
B:AGS802
|
4.3
|
44.4
|
1.0
|
|
O3B
|
B:AGS802
|
4.4
|
44.4
|
1.0
|
|
NH2
|
C:ARG643
|
4.4
|
41.2
|
1.0
|
|
PG
|
B:AGS802
|
4.4
|
44.4
|
1.0
|
|
HG23
|
B:THR502
|
4.4
|
45.9
|
1.0
|
|
HG21
|
B:THR604
|
4.4
|
47.9
|
1.0
|
|
OE1
|
B:GLU565
|
4.5
|
49.5
|
1.0
|
|
N
|
B:THR502
|
4.5
|
45.9
|
1.0
|
|
HB2
|
B:LYS501
|
4.6
|
44.5
|
1.0
|
|
PA
|
B:AGS802
|
4.6
|
44.4
|
1.0
|
|
HA
|
B:THR502
|
4.6
|
45.9
|
1.0
|
|
HH22
|
B:ARG518
|
4.7
|
45.9
|
1.0
|
|
CB
|
B:ASP564
|
4.7
|
48.2
|
1.0
|
|
HH22
|
B:ARG702
|
4.7
|
44.1
|
1.0
|
|
HH21
|
B:ARG518
|
4.7
|
45.9
|
1.0
|
|
HB
|
B:THR604
|
4.8
|
47.9
|
1.0
|
|
NH2
|
B:ARG518
|
4.9
|
45.9
|
1.0
|
|
HB2
|
B:ASP564
|
4.9
|
48.2
|
1.0
|
|
CB
|
B:THR604
|
5.0
|
47.9
|
1.0
|
|
Magnesium binding site 5 out
of 9 in 7uj0
Go back to
Magnesium Binding Sites List in 7uj0
Magnesium binding site 5 out
of 9 in the Clpap Complex Bound to Clps N-Terminal Extension, Class Iiib
 Mono view
 Stereo pair view
|
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 5 of Clpap Complex Bound to Clps N-Terminal Extension, Class Iiib within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Mg803
b:49.7
occ:1.00
|
OG1
|
C:THR221
|
2.0
|
51.6
|
1.0
|
|
O2G
|
C:AGS801
|
2.1
|
50.4
|
1.0
|
|
O2B
|
C:AGS801
|
2.1
|
50.4
|
1.0
|
|
CB
|
C:THR221
|
3.2
|
51.6
|
1.0
|
|
HB
|
C:THR221
|
3.2
|
51.6
|
1.0
|
|
O3B
|
C:AGS801
|
3.2
|
50.4
|
1.0
|
|
PB
|
C:AGS801
|
3.2
|
50.4
|
1.0
|
|
PG
|
C:AGS801
|
3.2
|
50.4
|
1.0
|
|
H
|
C:THR221
|
3.6
|
51.6
|
1.0
|
|
HH22
|
D:ARG340
|
3.6
|
48.1
|
1.0
|
|
HG21
|
C:THR221
|
3.8
|
51.6
|
1.0
|
|
OD1
|
C:ASP285
|
3.8
|
57.0
|
1.0
|
|
OD2
|
C:ASP285
|
3.9
|
57.0
|
1.0
|
|
HG
|
C:SER321
|
4.0
|
54.1
|
1.0
|
|
CG2
|
C:THR221
|
4.1
|
51.6
|
1.0
|
|
O3G
|
C:AGS801
|
4.1
|
50.4
|
1.0
|
|
N
|
C:THR221
|
4.1
|
51.6
|
1.0
|
|
HH21
|
D:ARG340
|
4.2
|
48.1
|
1.0
|
|
NH2
|
D:ARG340
|
4.2
|
48.1
|
1.0
|
|
CA
|
C:THR221
|
4.2
|
51.6
|
1.0
|
|
CG
|
C:ASP285
|
4.2
|
57.0
|
1.0
|
|
HH21
|
D:ARG339
|
4.3
|
47.8
|
1.0
|
|
O3A
|
C:AGS801
|
4.3
|
50.4
|
1.0
|
|
O1B
|
C:AGS801
|
4.3
|
50.4
|
1.0
|
|
O2A
|
C:AGS801
|
4.3
|
50.4
|
1.0
|
|
HB2
|
C:LYS220
|
4.4
|
50.1
|
1.0
|
|
HH22
|
D:ARG339
|
4.4
|
47.8
|
1.0
|
|
HE2
|
C:LYS220
|
4.5
|
50.1
|
1.0
|
|
OE2
|
C:GLU286
|
4.5
|
58.0
|
1.0
|
|
O1A
|
C:AGS801
|
4.6
|
50.4
|
1.0
|
|
PA
|
C:AGS801
|
4.6
|
50.4
|
1.0
|
|
HA
|
C:THR221
|
4.6
|
51.6
|
1.0
|
|
HG23
|
C:THR221
|
4.6
|
51.6
|
1.0
|
|
NH2
|
D:ARG339
|
4.6
|
47.8
|
1.0
|
|
OG
|
C:SER321
|
4.6
|
54.1
|
1.0
|
|
S1G
|
C:AGS801
|
4.7
|
50.4
|
1.0
|
|
HG22
|
C:THR221
|
4.7
|
51.6
|
1.0
|
|
Magnesium binding site 6 out
of 9 in 7uj0
Go back to
Magnesium Binding Sites List in 7uj0
Magnesium binding site 6 out
of 9 in the Clpap Complex Bound to Clps N-Terminal Extension, Class Iiib
 Mono view
 Stereo pair view
|
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 6 of Clpap Complex Bound to Clps N-Terminal Extension, Class Iiib within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Mg804
b:47.9
occ:1.00
|
OG1
|
C:THR502
|
2.0
|
41.5
|
1.0
|
|
O2B
|
C:AGS802
|
2.3
|
44.0
|
1.0
|
|
S1G
|
C:AGS802
|
2.4
|
44.0
|
1.0
|
|
HB
|
C:THR502
|
2.6
|
41.5
|
1.0
|
|
CB
|
C:THR502
|
2.8
|
41.5
|
1.0
|
|
O3B
|
C:AGS802
|
3.3
|
44.0
|
1.0
|
|
PB
|
C:AGS802
|
3.4
|
44.0
|
1.0
|
|
H
|
C:THR502
|
3.4
|
41.5
|
1.0
|
|
PG
|
C:AGS802
|
3.5
|
44.0
|
1.0
|
|
HG21
|
C:THR502
|
3.6
|
41.5
|
1.0
|
|
HG1
|
C:THR604
|
3.7
|
39.9
|
1.0
|
|
CG2
|
C:THR502
|
3.8
|
41.5
|
1.0
|
|
N
|
C:THR502
|
3.8
|
41.5
|
1.0
|
|
HH22
|
D:ARG643
|
3.9
|
45.8
|
1.0
|
|
OE2
|
C:GLU565
|
3.9
|
44.0
|
1.0
|
|
CA
|
C:THR502
|
3.9
|
41.5
|
1.0
|
|
HB2
|
C:LYS501
|
4.1
|
41.2
|
1.0
|
|
O1A
|
C:AGS802
|
4.1
|
44.0
|
1.0
|
|
OD1
|
C:ASP564
|
4.1
|
41.2
|
1.0
|
|
O2A
|
C:AGS802
|
4.2
|
44.0
|
1.0
|
|
HG22
|
C:THR502
|
4.3
|
41.5
|
1.0
|
|
O3A
|
C:AGS802
|
4.3
|
44.0
|
1.0
|
|
PA
|
C:AGS802
|
4.4
|
44.0
|
1.0
|
|
HA
|
C:THR502
|
4.4
|
41.5
|
1.0
|
|
O3G
|
C:AGS802
|
4.4
|
44.0
|
1.0
|
|
HG21
|
C:THR604
|
4.5
|
39.9
|
1.0
|
|
HG23
|
C:THR502
|
4.5
|
41.5
|
1.0
|
|
OG1
|
C:THR604
|
4.5
|
39.9
|
1.0
|
|
NH2
|
D:ARG643
|
4.6
|
45.8
|
1.0
|
|
O1B
|
C:AGS802
|
4.6
|
44.0
|
1.0
|
|
O2G
|
C:AGS802
|
4.7
|
44.0
|
1.0
|
|
HH21
|
C:ARG702
|
4.7
|
47.9
|
1.0
|
|
HB3
|
C:LYS501
|
4.7
|
41.2
|
1.0
|
|
CG
|
C:ASP564
|
4.7
|
41.2
|
1.0
|
|
HB
|
C:THR604
|
4.7
|
39.9
|
1.0
|
|
HH21
|
D:ARG643
|
4.7
|
45.8
|
1.0
|
|
C
|
C:LYS501
|
4.8
|
41.2
|
1.0
|
|
CB
|
C:LYS501
|
4.8
|
41.2
|
1.0
|
|
HH22
|
C:ARG518
|
4.9
|
40.4
|
1.0
|
|
HH21
|
C:ARG518
|
5.0
|
40.4
|
1.0
|
|
HB3
|
C:ASP564
|
5.0
|
41.2
|
1.0
|
|
Magnesium binding site 7 out
of 9 in 7uj0
Go back to
Magnesium Binding Sites List in 7uj0
Magnesium binding site 7 out
of 9 in the Clpap Complex Bound to Clps N-Terminal Extension, Class Iiib
 Mono view
 Stereo pair view
|
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 7 of Clpap Complex Bound to Clps N-Terminal Extension, Class Iiib within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
D:Mg803
b:46.4
occ:1.00
|
OG1
|
D:THR221
|
2.0
|
44.5
|
1.0
|
|
O1B
|
D:AGS801
|
2.0
|
47.4
|
1.0
|
|
O2B
|
D:AGS801
|
2.3
|
47.4
|
1.0
|
|
PB
|
D:AGS801
|
2.4
|
47.4
|
1.0
|
|
S1G
|
D:AGS801
|
3.1
|
47.4
|
1.0
|
|
O3B
|
D:AGS801
|
3.2
|
47.4
|
1.0
|
|
CB
|
D:THR221
|
3.3
|
44.5
|
1.0
|
|
HH22
|
E:ARG340
|
3.4
|
48.2
|
1.0
|
|
HB
|
D:THR221
|
3.5
|
44.5
|
1.0
|
|
OD2
|
D:ASP285
|
3.5
|
49.9
|
1.0
|
|
PG
|
D:AGS801
|
3.5
|
47.4
|
1.0
|
|
HG22
|
D:THR221
|
3.5
|
44.5
|
1.0
|
|
OD1
|
D:ASP285
|
3.6
|
49.9
|
1.0
|
|
OE2
|
D:GLU286
|
3.6
|
50.9
|
1.0
|
|
O3G
|
D:AGS801
|
3.7
|
47.4
|
1.0
|
|
HG
|
D:SER321
|
3.8
|
45.5
|
1.0
|
|
O3A
|
D:AGS801
|
3.9
|
47.4
|
1.0
|
|
CG2
|
D:THR221
|
3.9
|
44.5
|
1.0
|
|
CG
|
D:ASP285
|
4.0
|
49.9
|
1.0
|
|
NH2
|
E:ARG340
|
4.0
|
48.2
|
1.0
|
|
H
|
D:THR221
|
4.0
|
44.5
|
1.0
|
|
HH22
|
E:ARG339
|
4.1
|
47.9
|
1.0
|
|
HH21
|
E:ARG340
|
4.2
|
48.2
|
1.0
|
|
HH21
|
E:ARG339
|
4.4
|
47.9
|
1.0
|
|
HG21
|
D:THR221
|
4.4
|
44.5
|
1.0
|
|
CA
|
D:THR221
|
4.4
|
44.5
|
1.0
|
|
HB2
|
D:LYS220
|
4.4
|
44.3
|
1.0
|
|
N
|
D:THR221
|
4.4
|
44.5
|
1.0
|
|
OG
|
D:SER321
|
4.5
|
45.5
|
1.0
|
|
NH2
|
E:ARG339
|
4.6
|
47.9
|
1.0
|
|
HE2
|
D:LYS220
|
4.6
|
44.3
|
1.0
|
|
HA
|
D:THR221
|
4.6
|
44.5
|
1.0
|
|
O2A
|
D:AGS801
|
4.7
|
47.4
|
1.0
|
|
O5'
|
D:AGS801
|
4.7
|
47.4
|
1.0
|
|
HG23
|
D:THR221
|
4.7
|
44.5
|
1.0
|
|
CD
|
D:GLU286
|
4.7
|
50.9
|
1.0
|
|
HZ1
|
D:LYS220
|
4.8
|
44.3
|
1.0
|
|
PA
|
D:AGS801
|
4.8
|
47.4
|
1.0
|
|
HH12
|
E:ARG340
|
4.9
|
48.2
|
1.0
|
|
O2G
|
D:AGS801
|
5.0
|
47.4
|
1.0
|
|
Magnesium binding site 8 out
of 9 in 7uj0
Go back to
Magnesium Binding Sites List in 7uj0
Magnesium binding site 8 out
of 9 in the Clpap Complex Bound to Clps N-Terminal Extension, Class Iiib
 Mono view
 Stereo pair view
|
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 8 of Clpap Complex Bound to Clps N-Terminal Extension, Class Iiib within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
D:Mg804
b:53.4
occ:1.00
|
O2B
|
D:AGS802
|
2.0
|
59.3
|
1.0
|
|
O3G
|
D:AGS802
|
2.1
|
59.3
|
1.0
|
|
OG1
|
D:THR502
|
2.2
|
51.1
|
1.0
|
|
HB
|
D:THR502
|
3.2
|
51.1
|
1.0
|
|
CB
|
D:THR502
|
3.2
|
51.1
|
1.0
|
|
PB
|
D:AGS802
|
3.3
|
59.3
|
1.0
|
|
PG
|
D:AGS802
|
3.4
|
59.3
|
1.0
|
|
O3B
|
D:AGS802
|
3.5
|
59.3
|
1.0
|
|
HG21
|
D:THR502
|
3.8
|
51.1
|
1.0
|
|
HH22
|
E:ARG643
|
3.8
|
65.2
|
1.0
|
|
HG1
|
D:THR604
|
4.0
|
50.2
|
1.0
|
|
H
|
D:THR502
|
4.0
|
51.1
|
1.0
|
|
HB2
|
D:LYS501
|
4.1
|
53.5
|
1.0
|
|
O3A
|
D:AGS802
|
4.1
|
59.3
|
1.0
|
|
HE3
|
D:LYS501
|
4.1
|
53.5
|
1.0
|
|
CG2
|
D:THR502
|
4.1
|
51.1
|
1.0
|
|
O2G
|
D:AGS802
|
4.2
|
59.3
|
1.0
|
|
OG1
|
D:THR604
|
4.2
|
50.2
|
1.0
|
|
N
|
D:THR502
|
4.3
|
51.1
|
1.0
|
|
CA
|
D:THR502
|
4.4
|
51.1
|
1.0
|
|
O2A
|
D:AGS802
|
4.4
|
59.3
|
1.0
|
|
HB
|
D:THR604
|
4.4
|
50.2
|
1.0
|
|
O1B
|
D:AGS802
|
4.5
|
59.3
|
1.0
|
|
OD1
|
E:ASP582
|
4.5
|
69.2
|
1.0
|
|
NH2
|
E:ARG643
|
4.5
|
65.2
|
1.0
|
|
HB3
|
D:ASP564
|
4.5
|
51.8
|
1.0
|
|
OD1
|
D:ASP564
|
4.6
|
51.8
|
1.0
|
|
HG21
|
D:THR604
|
4.6
|
50.2
|
1.0
|
|
HH21
|
E:ARG643
|
4.6
|
65.2
|
1.0
|
|
HG22
|
D:THR502
|
4.7
|
51.1
|
1.0
|
|
CG
|
D:ASP564
|
4.7
|
51.8
|
1.0
|
|
HA
|
D:THR502
|
4.7
|
51.1
|
1.0
|
|
HG23
|
D:THR502
|
4.8
|
51.1
|
1.0
|
|
S1G
|
D:AGS802
|
4.8
|
59.3
|
1.0
|
|
HH21
|
D:ARG702
|
4.8
|
65.7
|
1.0
|
|
CB
|
D:THR604
|
4.8
|
50.2
|
1.0
|
|
HH21
|
D:ARG518
|
4.9
|
49.0
|
1.0
|
|
PA
|
D:AGS802
|
4.9
|
59.3
|
1.0
|
|
OE1
|
D:GLU565
|
5.0
|
56.6
|
1.0
|
|
CB
|
D:LYS501
|
5.0
|
53.5
|
1.0
|
|
OD2
|
D:ASP564
|
5.0
|
51.8
|
1.0
|
|
Magnesium binding site 9 out
of 9 in 7uj0
Go back to
Magnesium Binding Sites List in 7uj0
Magnesium binding site 9 out
of 9 in the Clpap Complex Bound to Clps N-Terminal Extension, Class Iiib
 Mono view
 Stereo pair view
|
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 9 of Clpap Complex Bound to Clps N-Terminal Extension, Class Iiib within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
E:Mg803
b:57.0
occ:1.00
|
OG1
|
E:THR221
|
2.0
|
55.3
|
1.0
|
|
O1B
|
E:ADP801
|
2.1
|
59.0
|
1.0
|
|
O1A
|
E:ADP801
|
2.3
|
59.0
|
1.0
|
|
PB
|
E:ADP801
|
3.3
|
59.0
|
1.0
|
|
PA
|
E:ADP801
|
3.3
|
59.0
|
1.0
|
|
CB
|
E:THR221
|
3.3
|
55.3
|
1.0
|
|
O3A
|
E:ADP801
|
3.4
|
59.0
|
1.0
|
|
HB
|
E:THR221
|
3.5
|
55.3
|
1.0
|
|
H
|
E:THR221
|
3.7
|
55.3
|
1.0
|
|
OD1
|
E:ASP285
|
3.8
|
56.7
|
1.0
|
|
HG21
|
E:THR221
|
3.9
|
55.3
|
1.0
|
|
OD2
|
E:ASP285
|
4.0
|
56.7
|
1.0
|
|
O2B
|
E:ADP801
|
4.0
|
59.0
|
1.0
|
|
O2A
|
E:ADP801
|
4.0
|
59.0
|
1.0
|
|
CG2
|
E:THR221
|
4.2
|
55.3
|
1.0
|
|
HG
|
E:SER321
|
4.2
|
53.0
|
1.0
|
|
N
|
E:THR221
|
4.2
|
55.3
|
1.0
|
|
OE2
|
E:GLU286
|
4.3
|
59.2
|
1.0
|
|
HB2
|
E:LYS220
|
4.3
|
55.8
|
1.0
|
|
CG
|
E:ASP285
|
4.3
|
56.7
|
1.0
|
|
CA
|
E:THR221
|
4.3
|
55.3
|
1.0
|
|
HE3
|
E:LYS220
|
4.4
|
55.8
|
1.0
|
|
O3B
|
E:ADP801
|
4.5
|
59.0
|
1.0
|
|
HG23
|
E:THR221
|
4.5
|
55.3
|
1.0
|
|
HH22
|
F:ARG339
|
4.5
|
87.9
|
1.0
|
|
NH2
|
F:ARG339
|
4.6
|
87.9
|
1.0
|
|
HA
|
E:THR221
|
4.6
|
55.3
|
1.0
|
|
O5'
|
E:ADP801
|
4.7
|
59.0
|
1.0
|
|
CZ
|
F:ARG339
|
4.8
|
87.9
|
1.0
|
|
HH21
|
F:ARG339
|
4.8
|
87.9
|
1.0
|
|
HH12
|
F:ARG339
|
4.9
|
87.9
|
1.0
|
|
OG
|
E:SER321
|
5.0
|
53.0
|
1.0
|
|
NH1
|
F:ARG339
|
5.0
|
87.9
|
1.0
|
|
HG22
|
E:THR221
|
5.0
|
55.3
|
1.0
|
|
Reference:
S.Kim,
X.Fei,
R.T.Sauer,
T.A.Baker.
Aaa+ Protease-Adaptor Structures Reveal Altered Conformations and Ring Specialization. Nat.Struct.Mol.Biol. V. 29 1068 2022.
ISSN: ESSN 1545-9985
PubMed: 36329286
DOI: 10.1038/S41594-022-00850-3
Page generated: Thu Oct 3 10:02:47 2024
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