Atomistry » Magnesium » PDB 7us2-7v2f » 7use
Atomistry »
  Magnesium »
    PDB 7us2-7v2f »
      7use »

Magnesium in PDB 7use: Cryo-Em Structure of Wave Regulatory Complex with RAC1 Bound on Both A and D Site

Enzymatic activity of Cryo-Em Structure of Wave Regulatory Complex with RAC1 Bound on Both A and D Site

All present enzymatic activity of Cryo-Em Structure of Wave Regulatory Complex with RAC1 Bound on Both A and D Site:
3.6.5.2;

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Cryo-Em Structure of Wave Regulatory Complex with RAC1 Bound on Both A and D Site (pdb code 7use). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the Cryo-Em Structure of Wave Regulatory Complex with RAC1 Bound on Both A and D Site, PDB code: 7use:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in 7use

Go back to Magnesium Binding Sites List in 7use
Magnesium binding site 1 out of 2 in the Cryo-Em Structure of Wave Regulatory Complex with RAC1 Bound on Both A and D Site


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Cryo-Em Structure of Wave Regulatory Complex with RAC1 Bound on Both A and D Site within 5.0Å range:
probe atom residue distance (Å) B Occ
F:Mg501

b:62.4
occ:1.00
CB F:THR17 2.6 64.2 1.0
O1B F:GNP500 2.8 62.6 1.0
CG2 F:THR17 2.9 64.2 1.0
OG1 F:THR35 3.0 59.4 1.0
OD2 F:ASP57 3.0 61.9 1.0
N3B F:GNP500 3.3 62.6 1.0
CG2 F:THR35 3.4 59.4 1.0
OG1 F:THR17 3.5 64.2 1.0
PB F:GNP500 3.6 62.6 1.0
CA F:THR17 3.7 64.2 1.0
O1G F:GNP500 3.7 62.6 1.0
N F:THR17 3.7 64.2 1.0
O3G F:GNP500 3.8 62.6 1.0
PG F:GNP500 3.8 62.6 1.0
CB F:THR35 3.8 59.4 1.0
CG F:ASP57 3.9 61.9 1.0
OD1 F:ASP57 4.0 61.9 1.0
O2A F:GNP500 4.4 62.6 1.0
O1A F:GNP500 4.4 62.6 1.0
O3A F:GNP500 4.5 62.6 1.0
N F:THR35 4.6 59.4 1.0
PA F:GNP500 4.6 62.6 1.0
O F:ILE33 4.7 59.2 1.0
O2B F:GNP500 4.8 62.6 1.0
CA F:THR35 4.9 59.4 1.0
C F:THR17 4.9 64.2 1.0
C F:LYS16 5.0 62.6 1.0

Magnesium binding site 2 out of 2 in 7use

Go back to Magnesium Binding Sites List in 7use
Magnesium binding site 2 out of 2 in the Cryo-Em Structure of Wave Regulatory Complex with RAC1 Bound on Both A and D Site


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Cryo-Em Structure of Wave Regulatory Complex with RAC1 Bound on Both A and D Site within 5.0Å range:
probe atom residue distance (Å) B Occ
G:Mg501

b:14.7
occ:1.00
CG2 G:THR35 1.8 61.8 1.0
O3G G:GTP500 2.1 17.6 1.0
O1B G:GTP500 2.2 14.5 1.0
OG1 G:THR35 2.6 61.8 1.0
CB G:THR35 2.8 61.8 1.0
CG2 G:THR17 3.0 61.0 1.0
PG G:GTP500 3.4 15.4 1.0
PB G:GTP500 3.5 13.8 1.0
N G:THR35 3.5 61.8 1.0
O3B G:GTP500 3.6 12.2 1.0
CA G:THR35 3.8 61.8 1.0
O G:ILE33 3.9 62.8 1.0
O1A G:GTP500 4.0 19.0 1.0
OG1 G:THR17 4.1 61.0 1.0
C G:PRO34 4.1 61.1 1.0
CB G:THR17 4.2 61.0 1.0
O2G G:GTP500 4.2 16.2 1.0
O3A G:GTP500 4.3 15.1 1.0
OD1 G:ASP57 4.4 61.9 1.0
O1G G:GTP500 4.5 17.0 1.0
CA G:PRO34 4.6 61.1 1.0
O2B G:GTP500 4.6 12.9 1.0
PA G:GTP500 4.7 17.3 1.0
CE1 G:TYR32 4.8 61.5 1.0
O G:THR35 4.8 61.8 1.0
C G:THR35 4.9 61.8 1.0
O G:PRO34 4.9 61.1 1.0
C G:ILE33 4.9 62.8 1.0

Reference:

B.Ding, S.Yang, M.Schaks, Y.Liu, A.J.Brown, K.Rottner, S.Chowdhury, B.Chen. Structures Reveal A Key Mechanism of Wave Regulatory Complex Activation By RAC1 Gtpase. Nat Commun V. 13 5444 2022.
ISSN: ESSN 2041-1723
PubMed: 36114192
DOI: 10.1038/S41467-022-33174-3
Page generated: Thu Oct 3 10:12:32 2024

Last articles

Na in 6D9B
Na in 6D99
Na in 6D9A
Na in 6D5L
Na in 6D55
Na in 6D5J
Na in 6D5E
Na in 6D56
Na in 6D64
Na in 6D59
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy