Magnesium in PDB 7utj: Cryogenic Electron Microscopy 3D Map of F-Actin Bound By Human Dimeric Alpha-Catenin
Magnesium Binding Sites:
The binding sites of Magnesium atom in the Cryogenic Electron Microscopy 3D Map of F-Actin Bound By Human Dimeric Alpha-Catenin
(pdb code 7utj). This binding sites where shown within
5.0 Angstroms radius around Magnesium atom.
In total 6 binding sites of Magnesium where determined in the
Cryogenic Electron Microscopy 3D Map of F-Actin Bound By Human Dimeric Alpha-Catenin, PDB code: 7utj:
Jump to Magnesium binding site number:
1;
2;
3;
4;
5;
6;
Magnesium binding site 1 out
of 6 in 7utj
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Magnesium Binding Sites List in 7utj
Magnesium binding site 1 out
of 6 in the Cryogenic Electron Microscopy 3D Map of F-Actin Bound By Human Dimeric Alpha-Catenin
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 1 of Cryogenic Electron Microscopy 3D Map of F-Actin Bound By Human Dimeric Alpha-Catenin within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Mg402
b:24.1
occ:1.00
|
O2B
|
A:ADP401
|
1.9
|
30.9
|
1.0
|
PB
|
A:ADP401
|
3.4
|
30.9
|
1.0
|
OD2
|
A:ASP154
|
3.8
|
18.7
|
1.0
|
O2A
|
A:ADP401
|
3.9
|
30.9
|
1.0
|
OE1
|
A:GLN137
|
4.0
|
21.7
|
1.0
|
OD2
|
A:ASP11
|
4.0
|
27.3
|
1.0
|
O3A
|
A:ADP401
|
4.2
|
30.9
|
1.0
|
O3B
|
A:ADP401
|
4.2
|
30.9
|
1.0
|
CD
|
A:GLN137
|
4.3
|
21.7
|
1.0
|
NE2
|
A:GLN137
|
4.3
|
21.7
|
1.0
|
O1B
|
A:ADP401
|
4.3
|
30.9
|
1.0
|
OD1
|
A:ASP154
|
4.5
|
18.7
|
1.0
|
NZ
|
A:LYS18
|
4.5
|
24.5
|
1.0
|
OD1
|
A:ASP11
|
4.5
|
27.3
|
1.0
|
PA
|
A:ADP401
|
4.5
|
30.9
|
1.0
|
CG
|
A:ASP154
|
4.6
|
18.7
|
1.0
|
CG2
|
A:VAL339
|
4.6
|
23.0
|
1.0
|
CG
|
A:ASP11
|
4.7
|
27.3
|
1.0
|
CA
|
A:GLY13
|
4.7
|
24.6
|
1.0
|
CA
|
A:GLY156
|
4.8
|
18.9
|
1.0
|
CB
|
A:VAL339
|
4.9
|
23.0
|
1.0
|
|
Magnesium binding site 2 out
of 6 in 7utj
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Magnesium Binding Sites List in 7utj
Magnesium binding site 2 out
of 6 in the Cryogenic Electron Microscopy 3D Map of F-Actin Bound By Human Dimeric Alpha-Catenin
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 2 of Cryogenic Electron Microscopy 3D Map of F-Actin Bound By Human Dimeric Alpha-Catenin within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Mg402
b:19.6
occ:1.00
|
O2B
|
B:ADP401
|
2.0
|
30.9
|
1.0
|
PB
|
B:ADP401
|
3.5
|
30.9
|
1.0
|
OE1
|
B:GLN137
|
3.9
|
19.1
|
1.0
|
O2A
|
B:ADP401
|
4.0
|
30.9
|
1.0
|
OD2
|
B:ASP154
|
4.0
|
16.9
|
1.0
|
OD2
|
B:ASP11
|
4.0
|
24.5
|
1.0
|
NE2
|
B:GLN137
|
4.1
|
19.1
|
1.0
|
CD
|
B:GLN137
|
4.2
|
19.1
|
1.0
|
O3B
|
B:ADP401
|
4.2
|
30.9
|
1.0
|
O3A
|
B:ADP401
|
4.3
|
30.9
|
1.0
|
O1B
|
B:ADP401
|
4.3
|
30.9
|
1.0
|
OD1
|
B:ASP11
|
4.4
|
24.5
|
1.0
|
NZ
|
B:LYS18
|
4.5
|
20.0
|
1.0
|
CG2
|
B:VAL339
|
4.6
|
19.4
|
1.0
|
OD1
|
B:ASP154
|
4.6
|
16.9
|
1.0
|
PA
|
B:ADP401
|
4.6
|
30.9
|
1.0
|
CG
|
B:ASP11
|
4.7
|
24.5
|
1.0
|
CA
|
B:GLY13
|
4.7
|
20.4
|
1.0
|
CA
|
B:GLY156
|
4.7
|
17.5
|
1.0
|
CG
|
B:ASP154
|
4.8
|
16.9
|
1.0
|
CB
|
B:VAL339
|
4.9
|
19.4
|
1.0
|
|
Magnesium binding site 3 out
of 6 in 7utj
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Magnesium Binding Sites List in 7utj
Magnesium binding site 3 out
of 6 in the Cryogenic Electron Microscopy 3D Map of F-Actin Bound By Human Dimeric Alpha-Catenin
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 3 of Cryogenic Electron Microscopy 3D Map of F-Actin Bound By Human Dimeric Alpha-Catenin within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Mg402
b:18.2
occ:1.00
|
O2B
|
C:ADP401
|
2.0
|
30.9
|
1.0
|
PB
|
C:ADP401
|
3.4
|
30.9
|
1.0
|
OE1
|
C:GLN137
|
3.9
|
17.9
|
1.0
|
OD2
|
C:ASP11
|
3.9
|
23.2
|
1.0
|
NE2
|
C:GLN137
|
4.0
|
17.9
|
1.0
|
CD
|
C:GLN137
|
4.1
|
17.9
|
1.0
|
O2A
|
C:ADP401
|
4.1
|
30.9
|
1.0
|
O3B
|
C:ADP401
|
4.2
|
30.9
|
1.0
|
OD1
|
C:ASP11
|
4.2
|
23.2
|
1.0
|
O1B
|
C:ADP401
|
4.2
|
30.9
|
1.0
|
OD2
|
C:ASP154
|
4.2
|
15.7
|
1.0
|
O3A
|
C:ADP401
|
4.3
|
30.9
|
1.0
|
NZ
|
C:LYS18
|
4.4
|
18.8
|
1.0
|
CG
|
C:ASP11
|
4.4
|
23.2
|
1.0
|
CA
|
C:GLY13
|
4.5
|
21.2
|
1.0
|
CG2
|
C:VAL339
|
4.6
|
18.4
|
1.0
|
PA
|
C:ADP401
|
4.7
|
30.9
|
1.0
|
O
|
C:HOH503
|
4.8
|
19.3
|
1.0
|
OD1
|
C:ASP154
|
4.9
|
15.7
|
1.0
|
CB
|
C:VAL339
|
4.9
|
18.4
|
1.0
|
CA
|
C:GLY156
|
4.9
|
16.0
|
1.0
|
CG
|
C:ASP154
|
5.0
|
15.7
|
1.0
|
|
Magnesium binding site 4 out
of 6 in 7utj
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Magnesium Binding Sites List in 7utj
Magnesium binding site 4 out
of 6 in the Cryogenic Electron Microscopy 3D Map of F-Actin Bound By Human Dimeric Alpha-Catenin
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 4 of Cryogenic Electron Microscopy 3D Map of F-Actin Bound By Human Dimeric Alpha-Catenin within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
D:Mg402
b:20.8
occ:1.00
|
O2B
|
D:ADP401
|
2.0
|
30.9
|
1.0
|
PB
|
D:ADP401
|
3.4
|
30.9
|
1.0
|
OD2
|
D:ASP11
|
3.7
|
25.1
|
1.0
|
OE1
|
D:GLN137
|
3.9
|
19.0
|
1.0
|
NE2
|
D:GLN137
|
4.0
|
19.0
|
1.0
|
OD1
|
D:ASP11
|
4.1
|
25.1
|
1.0
|
CD
|
D:GLN137
|
4.1
|
19.0
|
1.0
|
O2A
|
D:ADP401
|
4.2
|
30.9
|
1.0
|
O1B
|
D:ADP401
|
4.2
|
30.9
|
1.0
|
OD2
|
D:ASP154
|
4.2
|
15.4
|
1.0
|
O3B
|
D:ADP401
|
4.2
|
30.9
|
1.0
|
NZ
|
D:LYS18
|
4.3
|
21.5
|
1.0
|
CG
|
D:ASP11
|
4.3
|
25.1
|
1.0
|
O3A
|
D:ADP401
|
4.3
|
30.9
|
1.0
|
CA
|
D:GLY13
|
4.4
|
22.0
|
1.0
|
CG2
|
D:VAL339
|
4.6
|
21.1
|
1.0
|
PA
|
D:ADP401
|
4.7
|
30.9
|
1.0
|
CB
|
D:VAL339
|
4.8
|
21.1
|
1.0
|
CE
|
D:LYS18
|
4.9
|
21.5
|
1.0
|
OD1
|
D:ASP154
|
4.9
|
15.4
|
1.0
|
N
|
D:GLY13
|
5.0
|
22.0
|
1.0
|
CG1
|
D:VAL339
|
5.0
|
21.1
|
1.0
|
|
Magnesium binding site 5 out
of 6 in 7utj
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Magnesium Binding Sites List in 7utj
Magnesium binding site 5 out
of 6 in the Cryogenic Electron Microscopy 3D Map of F-Actin Bound By Human Dimeric Alpha-Catenin
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 5 of Cryogenic Electron Microscopy 3D Map of F-Actin Bound By Human Dimeric Alpha-Catenin within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
E:Mg402
b:18.4
occ:1.00
|
O2B
|
E:ADP401
|
2.0
|
22.9
|
1.0
|
PB
|
E:ADP401
|
3.5
|
22.9
|
1.0
|
OE1
|
E:GLN137
|
3.7
|
23.3
|
1.0
|
NE2
|
E:GLN137
|
4.0
|
23.3
|
1.0
|
CD
|
E:GLN137
|
4.0
|
23.3
|
1.0
|
O2A
|
E:ADP401
|
4.1
|
22.9
|
1.0
|
OD2
|
E:ASP154
|
4.1
|
19.2
|
1.0
|
O3B
|
E:ADP401
|
4.1
|
22.9
|
1.0
|
OD2
|
E:ASP11
|
4.2
|
29.2
|
1.0
|
O3A
|
E:ADP401
|
4.3
|
22.9
|
1.0
|
O1B
|
E:ADP401
|
4.4
|
22.9
|
1.0
|
OD1
|
E:ASP11
|
4.5
|
29.2
|
1.0
|
CA
|
E:GLY13
|
4.6
|
23.7
|
1.0
|
NZ
|
E:LYS18
|
4.7
|
27.3
|
1.0
|
CG2
|
E:VAL339
|
4.7
|
25.5
|
1.0
|
CA
|
E:GLY156
|
4.7
|
17.4
|
1.0
|
PA
|
E:ADP401
|
4.7
|
22.9
|
1.0
|
CG
|
E:ASP11
|
4.8
|
29.2
|
1.0
|
|
Magnesium binding site 6 out
of 6 in 7utj
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Magnesium Binding Sites List in 7utj
Magnesium binding site 6 out
of 6 in the Cryogenic Electron Microscopy 3D Map of F-Actin Bound By Human Dimeric Alpha-Catenin
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 6 of Cryogenic Electron Microscopy 3D Map of F-Actin Bound By Human Dimeric Alpha-Catenin within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
F:Mg402
b:30.3
occ:1.00
|
O2B
|
F:ADP401
|
2.0
|
35.8
|
1.0
|
PB
|
F:ADP401
|
3.5
|
35.8
|
1.0
|
OD2
|
F:ASP154
|
3.7
|
28.9
|
1.0
|
OE1
|
F:GLN137
|
3.8
|
32.2
|
1.0
|
O2A
|
F:ADP401
|
4.0
|
35.8
|
1.0
|
CD
|
F:GLN137
|
4.1
|
32.2
|
1.0
|
NE2
|
F:GLN137
|
4.1
|
32.2
|
1.0
|
OD2
|
F:ASP11
|
4.2
|
41.4
|
1.0
|
O3B
|
F:ADP401
|
4.2
|
35.8
|
1.0
|
O3A
|
F:ADP401
|
4.3
|
35.8
|
1.0
|
O1B
|
F:ADP401
|
4.4
|
35.8
|
1.0
|
OD1
|
F:ASP154
|
4.5
|
28.9
|
1.0
|
CG
|
F:ASP154
|
4.5
|
28.9
|
1.0
|
OD1
|
F:ASP11
|
4.5
|
41.4
|
1.0
|
CG2
|
F:VAL339
|
4.6
|
34.5
|
1.0
|
CA
|
F:GLY156
|
4.6
|
30.8
|
1.0
|
NZ
|
F:LYS18
|
4.7
|
39.9
|
1.0
|
PA
|
F:ADP401
|
4.7
|
35.8
|
1.0
|
CA
|
F:GLY13
|
4.7
|
38.1
|
1.0
|
CG
|
F:ASP11
|
4.8
|
41.4
|
1.0
|
CB
|
F:VAL339
|
5.0
|
34.5
|
1.0
|
|
Reference:
E.S.Rangarajan,
E.W.Smith,
T.Izard.
Distinct Inter-Domain Interactions of Dimeric Versus Monomeric Alpha-Catenin Link the Membrane or Junctions to Filaments To Be Published.
Page generated: Thu Oct 3 10:12:32 2024
|