Magnesium in PDB 7uui: Nucleoplasmic Pre-60S Intermediate of the NOG2 Containing Post- Rotation State From A SPB1 D52A Strain

The structure of Nucleoplasmic Pre-60S Intermediate of the NOG2 Containing Post- Rotation State From A SPB1 D52A Strain also contains other interesting chemical elements:

Potassium

(K)

1 atom

The binding sites of Magnesium atom in the Nucleoplasmic Pre-60S Intermediate of the NOG2 Containing Post- Rotation State From A SPB1 D52A Strain (pdb code 7uui). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Nucleoplasmic Pre-60S Intermediate of the NOG2 Containing Post- Rotation State From A SPB1 D52A Strain, PDB code: 7uui:

Magnesium binding site 1 out of 1 in the Nucleoplasmic Pre-60S Intermediate of the NOG2 Containing Post- Rotation State From A SPB1 D52A Strain


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Nucleoplasmic Pre-60S Intermediate of the NOG2 Containing Post- Rotation State From A SPB1 D52A Strain within 5.0Å range: probe atom residue distance (Å) B Occ m:Mg501 b:8.4 occ:1.00 O3B m:GDP503 2.1 17.3 1.0 OG m:SER329 2.1 8.5 1.0 OG1 m:THR350 2.7 14.0 1.0 CB m:SER329 3.0 8.5 1.0 PB m:GDP503 3.2 17.3 1.0 O1B m:GDP503 3.3 17.3 1.0 CB m:THR350 3.5 14.0 1.0 N m:SER329 3.8 8.5 1.0 OD2 m:ASP366 3.8 5.8 1.0 O m:GLN342 4.0 16.0 1.0 CA m:SER329 4.0 8.5 1.0 OD1 m:ASP366 4.0 5.8 1.0 O2B m:GDP503 4.1 17.3 1.0 O1A m:GDP503 4.1 17.3 1.0 CG m:ASP366 4.3 5.8 1.0 O3A m:GDP503 4.4 17.3 1.0 CG2 m:THR350 4.4 14.0 1.0 N m:THR350 4.6 14.0 1.0 PA m:GDP503 4.6 17.3 1.0 CA m:THR350 4.7 14.0 1.0 O2A m:GDP503 4.7 17.3 1.0 O m:CYS367 4.9 5.7 1.0 C m:LYS328 4.9 9.2 1.0 K m:K502 5.0 15.8 1.0

K.Sekulski, V.E.Cruz, C.S.Weirich, J.P.Erzberger. Rrna Methylation By SPB1 Regulates the Gtpase Activity of NOG2 During 60S Ribosomal Subunit Assembly. Nat Commun V. 14 1207 2023.
ISSN: ESSN 2041-1723
PubMed: 36864048
DOI: 10.1038/S41467-023-36867-5